mRNA_Ecto-sp13_S_contig7006.18056.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A022Q7U4_ERYGU (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q7U4_ERYGU) HSP 1 Score: 63.9 bits (154), Expect = 2.820e-10 Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
RGL+NLGNTCFFNS +QN+ + L E LFG G Y+GPLT A R + E +GE
Sbjct: 177 RGLVNLGNTCFFNSVVQNLLAIKSLREYLFG-----LNGYYLGPLTYALRNLFFETSGE 230
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: UPI001C274E76 (ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C274E76) HSP 1 Score: 58.9 bits (141), Expect = 1.660e-8 Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGEG 180
RGL NLGNTCFFNS +QN+ L + F + E VGPL+ A RK+ LE++ EG
Sbjct: 228 RGLCNLGNTCFFNSVMQNLLAINTLRDYFF------KLDESVGPLSAAMRKLFLEISNEG 281
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A8K0HZ28_COCNU (Putative ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0HZ28_COCNU) HSP 1 Score: 58.2 bits (139), Expect = 3.090e-8 Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
RGL NLGNTCFFNS LQNIF +L + + VGPLT A +K+ +E +GE
Sbjct: 39 RGLTNLGNTCFFNSILQNIFAINMLRDYMLS------LNRPVGPLTMAMKKLFVETSGE 91
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: UPI000D1CD948 (ubiquitin carboxyl-terminal hydrolase 1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CD948) HSP 1 Score: 58.2 bits (139), Expect = 3.090e-8 Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
RGL+NLGNTCFFNS +QN+ R L + +G G GPLT A R+ LE+ G+
Sbjct: 242 RGLVNLGNTCFFNSVMQNLLAVRYLKDYFLNPVAG---GASEGPLTSALRRFFLEINGD 297
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A833VLD5_9POAL (Ubiquitinyl hydrolase 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VLD5_9POAL) HSP 1 Score: 58.2 bits (139), Expect = 3.110e-8 Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYV---GPLTKAFRKVLLEMAGE 177
RGL NLGNTCFFNS +QN+ ++L E+L + GPLT + RK+ LE GE
Sbjct: 219 RGLANLGNTCFFNSVMQNLLALKMLRESLLNPQNSDPDNNVTFVTGPLTMSLRKLFLETNGE 280
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A022QY46_ERYGU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QY46_ERYGU) HSP 1 Score: 57.0 bits (136), Expect = 7.900e-8 Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLE 165
RGL NLGNTCFFNS +QN+ L + F R + E +GPLT A RK+ +E
Sbjct: 224 RGLSNLGNTCFFNSTMQNLLSINSLRDYFF-----RTETESIGPLTSALRKLFIE 273
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A6I9RHW7_ELAGV (Ubiquitinyl hydrolase 1 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9RHW7_ELAGV) HSP 1 Score: 56.6 bits (135), Expect = 1.080e-7 Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
RGL NLGNTCFFNS LQN+F L + + + VGPLT A +K+ +E +GE
Sbjct: 208 RGLTNLGNTCFFNSILQNVFAINKLRDYMLS------LNKPVGPLTMAMKKLFVETSGE 260
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A6I9TW99_SESIN (Ubiquitinyl hydrolase 1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TW99_SESIN) HSP 1 Score: 56.6 bits (135), Expect = 1.090e-7 Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
RGL+NLGNTCFFNS +QN+ L + F + E VG LT A RK+ LE +GE
Sbjct: 312 RGLVNLGNTCFFNSIMQNLLAITSLRDYFF------KLDESVGSLTAALRKLFLETSGE 364
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A6J1IBT4_CUCMA (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IBT4_CUCMA) HSP 1 Score: 55.8 bits (133), Expect = 2.020e-7 Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGEG 180
+G++NLGNTCFFNS LQN+ LL + L + E VGPLT A +K+L E EG
Sbjct: 237 KGMINLGNTCFFNSILQNLLAIDLLRDHLM------KLEECVGPLTIALKKILTEARMEG 290
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A8B9AHV0_PHODC (Ubiquitinyl hydrolase 1 n=5 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AHV0_PHODC) HSP 1 Score: 55.8 bits (133), Expect = 2.030e-7 Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
RGL NLGNTCFFNS LQNIF +L + + +GPLT +K+ +E +GE
Sbjct: 209 RGLSNLGNTCFFNSVLQNIFAINMLRDYMLS------LNRPIGPLTVVMKKLFVETSGE 261 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7006.18056.1 >prot_Ecto-sp13_S_contig7006.18056.1 ID=prot_Ecto-sp13_S_contig7006.18056.1|Name=mRNA_Ecto-sp13_S_contig7006.18056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRback to top mRNA from alignment at Ecto-sp13_S_contig7006:7306..7509+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7006.18056.1 ID=mRNA_Ecto-sp13_S_contig7006.18056.1|Name=mRNA_Ecto-sp13_S_contig7006.18056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7006:7306..7509+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7006:7306..7509+ >mRNA_Ecto-sp13_S_contig7006.18056.1 ID=mRNA_Ecto-sp13_S_contig7006.18056.1|Name=mRNA_Ecto-sp13_S_contig7006.18056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7006:7306..7509+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |