mRNA_Ecto-sp13_S_contig7006.18056.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7006.18056.1
Unique NamemRNA_Ecto-sp13_S_contig7006.18056.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A022Q7U4_ERYGU (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q7U4_ERYGU)

HSP 1 Score: 63.9 bits (154), Expect = 2.820e-10
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
            RGL+NLGNTCFFNS +QN+   + L E LFG       G Y+GPLT A R +  E +GE
Sbjct:  177 RGLVNLGNTCFFNSVVQNLLAIKSLREYLFG-----LNGYYLGPLTYALRNLFFETSGE 230          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: UPI001C274E76 (ubiquitin carboxyl-terminal hydrolase 2-like isoform X1 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C274E76)

HSP 1 Score: 58.9 bits (141), Expect = 1.660e-8
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGEG 180
            RGL NLGNTCFFNS +QN+     L +  F      +  E VGPL+ A RK+ LE++ EG
Sbjct:  228 RGLCNLGNTCFFNSVMQNLLAINTLRDYFF------KLDESVGPLSAAMRKLFLEISNEG 281          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A8K0HZ28_COCNU (Putative ubiquitin carboxyl-terminal hydrolase 2 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0HZ28_COCNU)

HSP 1 Score: 58.2 bits (139), Expect = 3.090e-8
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
            RGL NLGNTCFFNS LQNIF   +L + +            VGPLT A +K+ +E +GE
Sbjct:   39 RGLTNLGNTCFFNSILQNIFAINMLRDYMLS------LNRPVGPLTMAMKKLFVETSGE 91          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: UPI000D1CD948 (ubiquitin carboxyl-terminal hydrolase 1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CD948)

HSP 1 Score: 58.2 bits (139), Expect = 3.090e-8
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
            RGL+NLGNTCFFNS +QN+   R L +      +G   G   GPLT A R+  LE+ G+
Sbjct:  242 RGLVNLGNTCFFNSVMQNLLAVRYLKDYFLNPVAG---GASEGPLTSALRRFFLEINGD 297          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A833VLD5_9POAL (Ubiquitinyl hydrolase 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VLD5_9POAL)

HSP 1 Score: 58.2 bits (139), Expect = 3.110e-8
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYV---GPLTKAFRKVLLEMAGE 177
            RGL NLGNTCFFNS +QN+   ++L E+L    +           GPLT + RK+ LE  GE
Sbjct:  219 RGLANLGNTCFFNSVMQNLLALKMLRESLLNPQNSDPDNNVTFVTGPLTMSLRKLFLETNGE 280          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A022QY46_ERYGU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QY46_ERYGU)

HSP 1 Score: 57.0 bits (136), Expect = 7.900e-8
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLE 165
            RGL NLGNTCFFNS +QN+     L +  F     R + E +GPLT A RK+ +E
Sbjct:  224 RGLSNLGNTCFFNSTMQNLLSINSLRDYFF-----RTETESIGPLTSALRKLFIE 273          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A6I9RHW7_ELAGV (Ubiquitinyl hydrolase 1 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9RHW7_ELAGV)

HSP 1 Score: 56.6 bits (135), Expect = 1.080e-7
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
            RGL NLGNTCFFNS LQN+F    L + +          + VGPLT A +K+ +E +GE
Sbjct:  208 RGLTNLGNTCFFNSILQNVFAINKLRDYMLS------LNKPVGPLTMAMKKLFVETSGE 260          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A6I9TW99_SESIN (Ubiquitinyl hydrolase 1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TW99_SESIN)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-7
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
            RGL+NLGNTCFFNS +QN+     L +  F      +  E VG LT A RK+ LE +GE
Sbjct:  312 RGLVNLGNTCFFNSIMQNLLAITSLRDYFF------KLDESVGSLTAALRKLFLETSGE 364          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A6J1IBT4_CUCMA (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IBT4_CUCMA)

HSP 1 Score: 55.8 bits (133), Expect = 2.020e-7
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGEG 180
            +G++NLGNTCFFNS LQN+    LL + L       +  E VGPLT A +K+L E   EG
Sbjct:  237 KGMINLGNTCFFNSILQNLLAIDLLRDHLM------KLEECVGPLTIALKKILTEARMEG 290          
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Match: A0A8B9AHV0_PHODC (Ubiquitinyl hydrolase 1 n=5 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AHV0_PHODC)

HSP 1 Score: 55.8 bits (133), Expect = 2.030e-7
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFRKVLLEMAGE 177
            RGL NLGNTCFFNS LQNIF   +L + +            +GPLT   +K+ +E +GE
Sbjct:  209 RGLSNLGNTCFFNSVLQNIFAINMLRDYMLS------LNRPIGPLTVVMKKLFVETSGE 261          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7006.18056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A022Q7U4_ERYGU2.820e-1052.54Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Eryt... [more]
UPI001C274E761.660e-848.33ubiquitin carboxyl-terminal hydrolase 2-like isofo... [more]
A0A8K0HZ28_COCNU3.090e-849.15Putative ubiquitin carboxyl-terminal hydrolase 2 n... [more]
UPI000D1CD9483.090e-847.46ubiquitin carboxyl-terminal hydrolase 1 n=2 Tax=Se... [more]
A0A833VLD5_9POAL3.110e-845.16Ubiquitinyl hydrolase 1 n=1 Tax=Carex littledalei ... [more]
A0A022QY46_ERYGU7.900e-849.09Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Eryt... [more]
A0A6I9RHW7_ELAGV1.080e-747.46Ubiquitinyl hydrolase 1 n=1 Tax=Elaeis guineensis ... [more]
A0A6I9TW99_SESIN1.090e-749.15Ubiquitinyl hydrolase 1 n=1 Tax=Sesamum indicum Ta... [more]
A0A6J1IBT4_CUCMA2.020e-748.33Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Cucu... [more]
A0A8B9AHV0_PHODC2.030e-745.76Ubiquitinyl hydrolase 1 n=5 Tax=Phoenix dactylifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7006contigEcto-sp13_S_contig7006:7306..7509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score62.8
Seed ortholog evalue7.3e-08
Seed eggNOG ortholog4155.Migut.N00208.1.p
Preferred nameUBP2
Model size204
KEGG koko:K11844
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009987,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons1
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs37MAY@33090,3G74P@35493,COG5560@1,KOG1873@2759
EC3.4.19.12
Cds size204
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.1524239-CDS-Ecto-sp13_S_contig7006:7305..75091681463962.1524239-CDS-Ecto-sp13_S_contig7006:7305..7509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7006 7306..7509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7006.18056.1prot_Ecto-sp13_S_contig7006.18056.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7006 7306..7509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7006.18056.1

>prot_Ecto-sp13_S_contig7006.18056.1 ID=prot_Ecto-sp13_S_contig7006.18056.1|Name=mRNA_Ecto-sp13_S_contig7006.18056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
RGLLNLGNTCFFNSALQNIFKARLLHEALFGDSSGRRQGEYVGPLTKAFR
KVLLEMAGEGPVGGRRG*
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mRNA from alignment at Ecto-sp13_S_contig7006:7306..7509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7006.18056.1 ID=mRNA_Ecto-sp13_S_contig7006.18056.1|Name=mRNA_Ecto-sp13_S_contig7006.18056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7006:7306..7509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGACTGCTTAACCTGGGCAACACGTGCTTCTTCAACTCGGCGCTGCA GAACATCTTCAAGGCGAGGCTGCTGCATGAGGCTCTGTTCGGGGATAGCT CGGGGCGGAGGCAGGGCGAGTACGTTGGCCCGTTGACGAAGGCCTTCCGG AAGGTGCTCCTGGAGATGGCGGGAGAAGGTCCTGTAGGGGGCAGGCGAGG GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7006:7306..7509+

>mRNA_Ecto-sp13_S_contig7006.18056.1 ID=mRNA_Ecto-sp13_S_contig7006.18056.1|Name=mRNA_Ecto-sp13_S_contig7006.18056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7006:7306..7509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGACTGCTTAACCTGGGCAACACGTGCTTCTTCAACTCGGCGCTGCA
GAACATCTTCAAGGCGAGGCTGCTGCATGAGGCTCTGTTCGGGGATAGCT
CGGGGCGGAGGCAGGGCGAGTACGTTGGCCCGTTGACGAAGGCCTTCCGG
AAGGTGCTCCTGGAGATGGCGGGAGAAGGTCCTGTAGGGGGCAGGCGAGG
GTGA
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