mRNA_Ecto-sp13_S_contig69924.18015.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69924.18015.1
Unique NamemRNA_Ecto-sp13_S_contig69924.18015.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 3.260e-62
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    4 QVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDDLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            +VLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNED+LKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH
Sbjct:  134 KVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 227
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BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.070e-57
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    4 QVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDDLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            +VLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFA E FPVWVRMPNED+LKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH
Sbjct:  134 KVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 227
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BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 7.330e-53
Identity = 80/90 (88.89%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:   16 VLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDDLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            VLRILGRGNYFDDVSEVTGMGEATVN +FHKFT RFAREFFPVWVRMPNED+LK+IMKTYDEVGM+GAMGSMDGTH++WT+CPYS+RSSH
Sbjct:  101 VLRILGRGNYFDDVSEVTGMGEATVNQLFHKFTGRFAREFFPVWVRMPNEDELKEIMKTYDEVGMTGAMGSMDGTHLQWTVCPYSERSSH 190
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BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.300e-47
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    4 QVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDDLKDIMKTYDEVGMSGAMGSMDGTHI 246
            +VLAVLRILGRGNYFDDVSEVTGMGEATVNH+FHKFTERFAREFFPVWVRMPNE +LK+IMKTYDEVGM+GAMGSMDGTH+
Sbjct:  133 KVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRMPNEVELKEIMKTYDEVGMTGAMGSMDGTHL 213
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5JG74_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG74_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 6.650e-43
Identity = 62/71 (87.32%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:   73 MGEATVNHMFHKFTERFAREFFPVWVRMPNEDDLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            MGEATVN +FHKFTERFAREFFPVWVRMPNED+LK+IMKTYDEVGM+GAMGSMDGTH++WT+CPYS+RSSH
Sbjct:    1 MGEATVNQLFHKFTERFAREFFPVWVRMPNEDELKEIMKTYDEVGMTGAMGSMDGTHLQWTVCPYSERSSH 71
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.650e-23
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    4 QVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNED--DLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            +VLA L ILGRGN F  + +++ M  ATV  MFHKF + FARE +   + +P+E   +L  +MK YD +G SGAMGSMD THI W+ CPY+   S+
Sbjct:  125 KVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSY 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.120e-21
Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    4 QVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNED--DLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            +VLA L ILGRGN F  + +V+ M   TV  MFHKF + FARE +   + +P+E   +L  +MK YD +G SGAMGSMD THI W+ CPY+   S+
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSY 193
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.080e-21
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    4 QVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDD--LKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            +VLA L ILGRGN F  + +++ M   TV  MFHKF   FARE +   + +P E+   L  +MK YD +G +GA+GSMD THI W+ CPY+Q  S+
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSY 180
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: A0A6H5KSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.890e-21
Identity = 37/44 (84.09%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  154 MPNEDDLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            MPNED+LK+IMKTYDEVGM+GAMGSMDGTH++WT+CPYS+RSSH
Sbjct:    1 MPNEDELKEIMKTYDEVGMTGAMGSMDGTHLQWTVCPYSERSSH 44
[Close]
BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 9.070e-21
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    4 QVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNED--DLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH 285
            +VLA L ILGRGN F  + +++ M  ATV  MFH F + FARE +   + +P+E   +L  +MK YD +G SGAMGSMD THI W  CPY+   S+
Sbjct:  125 KVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSY 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69924.18015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRQ7_9PHAE3.260e-6297.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE1.070e-5795.74Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLF8_9PHAE7.330e-5388.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP98_9PHAE1.300e-4791.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG74_9PHAE6.650e-4387.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L642_9PHAE6.650e-2350.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.120e-2150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE3.080e-2147.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KSR0_9PHAE4.890e-2184.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI9.070e-2148.96Transposon protein, putative, Pong sub-class n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69924contigEcto-sp13_S_contig69924:14..298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score66.2
Seed ortholog evalue9.2e-09
Seed eggNOG ortholog44056.XP_009041040.1
Model size285
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
Cds size285
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463958.6103377-CDS-Ecto-sp13_S_contig69924:13..2981681463958.6103377-CDS-Ecto-sp13_S_contig69924:13..298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69924 14..298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69924.18015.1prot_Ecto-sp13_S_contig69924.18015.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69924 14..298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69924.18015.1

>prot_Ecto-sp13_S_contig69924.18015.1 ID=prot_Ecto-sp13_S_contig69924.18015.1|Name=mRNA_Ecto-sp13_S_contig69924.18015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
EQVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWV
RMPNEDDLKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSH
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mRNA from alignment at Ecto-sp13_S_contig69924:14..298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69924.18015.1 ID=mRNA_Ecto-sp13_S_contig69924.18015.1|Name=mRNA_Ecto-sp13_S_contig69924.18015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69924:14..298- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACAGGTTCTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGA
CGATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGT
TCCACAAGTTCACGGAGAGGTTCGCGCGTGAGTTTTTTCCGGTATGGGTG
AGGATGCCGAATGAAGACGACCTGAAGGACATCATGAAAACCTATGACGA
GGTTGGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGT
GGACGTTGTGTCCTTATTCCCAACGCTCGTCGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69924:14..298-

>mRNA_Ecto-sp13_S_contig69924.18015.1 ID=mRNA_Ecto-sp13_S_contig69924.18015.1|Name=mRNA_Ecto-sp13_S_contig69924.18015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69924:14..298- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACAGGTTCTGGCGGTGCTGCGCATACTGGGCAGAGGAAACTATTTCGA
CGATGTCTCGGAGGTCACCGGCATGGGCGAGGCCACGGTGAACCACATGT
TCCACAAGTTCACGGAGAGGTTCGCGCGTGAGTTTTTTCCGGTATGGGTG
AGGATGCCGAATGAAGACGACCTGAAGGACATCATGAAAACCTATGACGA
GGTTGGAATGTCGGGCGCCATGGGGTCGATGGATGGGACGCACATTGAGT
GGACGTTGTGTCCTTATTCCCAACGCTCGTCGCAC
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