mRNA_Ecto-sp13_S_contig6984.17995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6984.17995.1
Unique NamemRNA_Ecto-sp13_S_contig6984.17995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6984.17995.1 vs. uniprot
Match: D7G158_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G158_ECTSI)

HSP 1 Score: 1060 bits (2741), Expect = 0.000e+0
Identity = 521/561 (92.87%), Postives = 536/561 (95.54%), Query Frame = 1 
Query:    4 SVEYVYEEVSARASSPLLPYLSAFVVFVVSAKTCGLLSVPKQGTAFRFGPGEGQQQVCDGEAVMRLGATSYLARQMLIWSESDVARVGALVVDSCARRWGIKVLVTSCGGVPLAVGTIAFLVGVIMANLFVPHSLVAFTTAADVRTAWYCLGTSFFYVVGACAVATLIGAEAGLFAVTVVIFHVYWVSLLYGNIALSFPRDHYAGGVNERDDEWEQLLKAVRHRGIGQTVLGISDEGLLAGWRCLSPAKQEEFSPLVASLVRGDKAKWEVLGDARMANGYGMFHKNWLGVDPPIRLTRKNDVIEPVYGGESMDYDFNHAAVKRKLVQVGLDTTAGTNSTNPVYGNEGTLPVFYEQEEDCLDEHGVPKLSLLCVQPFRHERCRKRQQAGTGYCRSSGSPPVTLEEAWLLLFAALWGSWSCLGWMECDGVGGEPPAKEFALVFCVFNAFLSQRVEYLWAYRATPLLIKRLIAKNTAVVRVIWILFAFFVFTEVEKASLYVILLVYLAVIVPVRWVERRNWAEDACWRWGVEDGKPVGAFPVWAETSDGDEAGQWTQSCIGLTV 1686
            SVE+VYEEVSARASSPLLPYLSAFVV VVSAKTCGLLS PKQGTAFRFGPGEGQQ+VCDGEAVMRLGATSYLARQMLIWSESDVARVGALVVDSCARRWGIK LVTSCGGVPLAV TIAFLVGVIMANLFVPHSLVAFTTAADVRTA YCLGTS FYVVGACAVATLIGAEAGLFAVTVVIFHVYWVSLLYGNIALSFPRDHYAGGVNERDDEWEQLLKAVR RGIGQTVLGISDEGLLAGWR LSPAKQ+EFSPLVASLVRGDKAK EVLGD RM NGYGMFH+NW+GV PPI LTR+NDVIEPVYGGESMD+ FNHAA+KRKLVQVGLDTTAGTNSTNPVYGNEGTLPVFYEQEEDCLDEHGVPKLSLLCVQPFRH RCRK+QQAGTGYCRSSG PPVTLEEAWLLLFAALWGSWSCLGWME DGVGGEPPA E ALVFCVFNAFLSQRVEYLWAYRATPLLIKR IAKNTAVVRVIWIL AFFVFT+VEKA+LYV+LLVYLAVIVPVRWVERRNWA+D CWRWGVEDGKPVG FPVWAETSDG+EA QWT+SC GLTV
Sbjct:    3 SVEHVYEEVSARASSPLLPYLSAFVVLVVSAKTCGLLSAPKQGTAFRFGPGEGQQKVCDGEAVMRLGATSYLARQMLIWSESDVARVGALVVDSCARRWGIKDLVTSCGGVPLAVATIAFLVGVIMANLFVPHSLVAFTTAADVRTACYCLGTSLFYVVGACAVATLIGAEAGLFAVTVVIFHVYWVSLLYGNIALSFPRDHYAGGVNERDDEWEQLLKAVRRRGIGQTVLGISDEGLLAGWRYLSPAKQKEFSPLVASLVRGDKAKLEVLGDVRMENGYGMFHRNWVGVKPPIGLTRENDVIEPVYGGESMDFAFNHAALKRKLVQVGLDTTAGTNSTNPVYGNEGTLPVFYEQEEDCLDEHGVPKLSLLCVQPFRHARCRKQQQAGTGYCRSSGPPPVTLEEAWLLLFAALWGSWSCLGWMEWDGVGGEPPANESALVFCVFNAFLSQRVEYLWAYRATPLLIKRFIAKNTAVVRVIWILLAFFVFTKVEKAALYVVLLVYLAVIVPVRWVERRNWADDECWRWGVEDGKPVGTFPVWAETSDGNEAAQWTESCRGLTV 563
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BLAST of mRNA_Ecto-sp13_S_contig6984.17995.1 vs. uniprot
Match: A0A6H5KXB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXB6_9PHAE)

HSP 1 Score: 988 bits (2555), Expect = 0.000e+0
Identity = 501/609 (82.27%), Postives = 521/609 (85.55%), Query Frame = 1 
Query:    1 MSVEYVYEEVSARASSPLLPYLSAFVVFVVSAKTCGLLSVPKQGTAFRFGPGEGQQQVCDGEAVMRLGATSYLARQMLIWSESDVARVGALVVDSCARRWGIKVL-----------------------------------------VTSCGGVPLAVGTIAFLVGVIMANLFVPHSLVAFTTAADVRTAWYCLGTSFFYVVGACAVATLIGAEAGLFAVTVVIFHVYWVSLLYGNIALSFPRDHYAGGVNERDDEWEQLLKAVRHRGIGQTVLGISDEGLLAGWRCLSPAKQEEFSPLVASLVRGDKAKWEVLGDARMANGYGMFHKNWLGVDPPIRLTRKNDVIEPVYGGESM---DYDFNHAAVKRKLVQVGLDTTAGTNSTNPVYGNEGTLPVFYEQEEDCLDEHGVPKLSLLCVQPFRHERCRKRQQAGTGYCRSSGSPPVTLEEAWLLLFAALWGSWSCLGWMECDGVGGEPPAKEFALVFCVFNAFLSQRVEYLWAYRATPLLIKRLIAKNTAVVRVIWILFAFFVFTEVEKASLYVILLVYLAVIVPVRWVERRNWAEDACWRWGVEDGKPVGAFPVWAETSDGDEAGQWTQSCIGLTVKCA 1695
            MS E VYEEVSARASSPLL YLSAF+V VVSAKTCGLLSVPKQGTAFRFGPGE Q++VCDG+AVMRLGATSYLARQMLIWSESDVARVGALVVDSCARRWG+KVL                                         VTSCG VPLAV TIAF VGVIMANLFVPHSLVAFTTAADVRTA YCLGTS FYV+GACAVATLIGAEAGLFAVTVVIF VYWVSLLYGNIALSFP DHYAG VNE DDEWEQLLKAVRHRGIGQ VLGISDEGLLAGWR L PA+QEEF PLVASLVR DKAK EVLGD RM NGYGMFH+NW+GV+PPI LT  N+VIEPVYGGES+   DY FNHA VKRKLVQVGLDTTAGTNSTNPVYGNEGTLPVFYEQEEDCLDEHG+PKLSLLCVQPFRH RCRKRQQAGTGYCRSSG PPVTLEEAWLLLFAALWGSWSCLGWM+ DGVGGEPPA E ALVFCVFNAF SQRVEYLWAYRATPL IKR I KNTAVVRVIWILFA FVF EVEKA+LYVILLV LA+IVPVRWVERRNWA+D CWRWGVEDGKP GAFPVWAETSDG++A QWT+SC GLTVK A
Sbjct:    1 MSAENVYEEVSARASSPLLRYLSAFIVLVVSAKTCGLLSVPKQGTAFRFGPGEDQREVCDGKAVMRLGATSYLARQMLIWSESDVARVGALVVDSCARRWGVKVLSLLWGVTAAIWVYGVAWYIVLPSAAADIVDSPRTPVICKALVTSCGDVPLAVATIAFSVGVIMANLFVPHSLVAFTTAADVRTACYCLGTSLFYVMGACAVATLIGAEAGLFAVTVVIFPVYWVSLLYGNIALSFPGDHYAGRVNESDDEWEQLLKAVRHRGIGQRVLGISDEGLLAGWRYLCPARQEEFLPLVASLVREDKAKLEVLGDVRMENGYGMFHRNWVGVEPPIGLTITNNVIEPVYGGESIESIDYAFNHAGVKRKLVQVGLDTTAGTNSTNPVYGNEGTLPVFYEQEEDCLDEHGLPKLSLLCVQPFRHARCRKRQQAGTGYCRSSGPPPVTLEEAWLLLFAALWGSWSCLGWMKWDGVGGEPPANESALVFCVFNAFFSQRVEYLWAYRATPLCIKRFITKNTAVVRVIWILFAVFVFIEVEKAALYVILLVNLAMIVPVRWVERRNWADDECWRWGVEDGKPAGAFPVWAETSDGNQATQWTESCTGLTVKRA 609
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6984.17995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G158_ECTSI0.000e+092.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXB6_9PHAE0.000e+082.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6984contigEcto-sp13_S_contig6984:583..2403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1698
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005360.1
Cds size1698
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.329951-CDS-Ecto-sp13_S_contig6984:582..8911681463957.329951-CDS-Ecto-sp13_S_contig6984:582..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6984 583..891 +
1681463957.343193-CDS-Ecto-sp13_S_contig6984:1014..24031681463957.343193-CDS-Ecto-sp13_S_contig6984:1014..2403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6984 1015..2403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6984.17995.1prot_Ecto-sp13_S_contig6984.17995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6984 583..2403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6984.17995.1

>prot_Ecto-sp13_S_contig6984.17995.1 ID=prot_Ecto-sp13_S_contig6984.17995.1|Name=mRNA_Ecto-sp13_S_contig6984.17995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=566bp
MSVEYVYEEVSARASSPLLPYLSAFVVFVVSAKTCGLLSVPKQGTAFRFG
PGEGQQQVCDGEAVMRLGATSYLARQMLIWSESDVARVGALVVDSCARRW
GIKVLVTSCGGVPLAVGTIAFLVGVIMANLFVPHSLVAFTTAADVRTAWY
CLGTSFFYVVGACAVATLIGAEAGLFAVTVVIFHVYWVSLLYGNIALSFP
RDHYAGGVNERDDEWEQLLKAVRHRGIGQTVLGISDEGLLAGWRCLSPAK
QEEFSPLVASLVRGDKAKWEVLGDARMANGYGMFHKNWLGVDPPIRLTRK
NDVIEPVYGGESMDYDFNHAAVKRKLVQVGLDTTAGTNSTNPVYGNEGTL
PVFYEQEEDCLDEHGVPKLSLLCVQPFRHERCRKRQQAGTGYCRSSGSPP
VTLEEAWLLLFAALWGSWSCLGWMECDGVGGEPPAKEFALVFCVFNAFLS
QRVEYLWAYRATPLLIKRLIAKNTAVVRVIWILFAFFVFTEVEKASLYVI
LLVYLAVIVPVRWVERRNWAEDACWRWGVEDGKPVGAFPVWAETSDGDEA
GQWTQSCIGLTVKCA*
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mRNA from alignment at Ecto-sp13_S_contig6984:583..2403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6984.17995.1 ID=mRNA_Ecto-sp13_S_contig6984.17995.1|Name=mRNA_Ecto-sp13_S_contig6984.17995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6984:583..2403+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGTGGAATATGTCTACGAGGAGGTTTCCGCCCGAGCATCATCGCC
TTTGCTGCCATATTTGAGTGCATTCGTAGTCTTTGTGGTGTCCGCCAAGA
CATGCGGGCTTCTCTCGGTGCCGAAGCAGGGGACGGCGTTTCGTTTCGGC
CCCGGAGAGGGTCAACAGCAGGTGTGTGATGGTGAGGCCGTGATGCGCCT
AGGAGCAACGAGCTACCTTGCTCGGCAAATGCTCATCTGGAGCGAGAGCG
ACGTCGCCAGAGTCGGCGCCCTTGTGGTGGATTCGTGCGCCAGACGGTGG
GGAATCAAGGTGTTGTCGCTGTTGTGGGGCGTCACCGCTGCCATATGGGT
TTTCGGGGTCGCTTGGTTTACCGCCTTGCCAAGCGTAGCTGCCGATATTG
TCGATTCACCAAAGACTCTTGCTATCTGTAAGGTCTTGGTTACGAGTTGC
GGCGGTGTTCCTCTGGCGGTGGGAACGATAGCTTTTTTAGTCGGAGTCAT
CATGGCGAATCTGTTCGTACCGCACAGCCTCGTGGCGTTCACTACCGCCG
CAGACGTTCGGACGGCTTGGTATTGTCTCGGGACGTCGTTTTTTTACGTG
GTGGGTGCGTGCGCGGTGGCAACCCTGATCGGTGCGGAGGCGGGACTGTT
CGCCGTCACGGTTGTTATTTTCCACGTGTATTGGGTGAGTCTTCTGTACG
GCAATATCGCCCTCAGTTTCCCTCGCGACCACTATGCTGGTGGAGTGAAC
GAGAGAGACGACGAGTGGGAGCAGTTGCTCAAGGCCGTACGGCACCGGGG
CATCGGCCAGACAGTGCTGGGCATCAGTGACGAGGGATTGCTTGCTGGTT
GGCGATGTTTGTCTCCCGCAAAGCAGGAAGAATTTTCCCCCTTGGTGGCG
TCCTTGGTGAGAGGGGACAAAGCTAAGTGGGAAGTACTCGGGGACGCGAG
AATGGCAAACGGTTATGGCATGTTCCACAAAAACTGGCTTGGGGTCGACC
CTCCCATTAGATTGACGAGGAAGAACGATGTTATCGAACCGGTGTACGGC
GGAGAGTCGATGGACTACGATTTCAATCATGCCGCCGTGAAGCGGAAGCT
TGTTCAGGTTGGGCTAGATACCACGGCCGGGACCAACTCGACAAATCCTG
TTTACGGAAATGAGGGCACCCTCCCTGTCTTCTACGAGCAGGAAGAAGAT
TGTCTCGACGAGCACGGCGTGCCGAAGCTTTCACTTCTCTGTGTCCAGCC
TTTTCGCCATGAGAGGTGTAGAAAGCGGCAACAGGCAGGGACTGGCTATT
GCAGGTCTTCCGGCTCGCCACCGGTCACCTTGGAAGAGGCCTGGCTACTC
CTGTTTGCGGCGCTGTGGGGATCTTGGAGCTGTCTAGGTTGGATGGAATG
TGACGGGGTGGGCGGGGAACCCCCGGCGAAGGAATTTGCCCTCGTGTTTT
GTGTGTTCAACGCGTTTTTATCTCAGCGTGTCGAGTATCTGTGGGCGTAT
CGGGCAACTCCTCTGTTGATCAAGCGCTTAATCGCGAAGAACACGGCCGT
GGTCAGGGTCATCTGGATCTTGTTCGCCTTCTTCGTGTTCACCGAGGTCG
AGAAGGCTTCCCTCTATGTTATTTTGCTTGTCTACTTGGCCGTAATCGTT
CCAGTGAGGTGGGTGGAACGTCGAAATTGGGCCGAAGATGCGTGCTGGAG
GTGGGGGGTGGAGGATGGTAAACCCGTTGGCGCGTTCCCTGTTTGGGCCG
AAACCAGCGACGGCGACGAAGCAGGGCAGTGGACTCAGTCTTGCATAGGG
CTGACCGTGAAGTGTGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6984:583..2403+

>mRNA_Ecto-sp13_S_contig6984.17995.1 ID=mRNA_Ecto-sp13_S_contig6984.17995.1|Name=mRNA_Ecto-sp13_S_contig6984.17995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1698bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6984:583..2403+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGTGGAATATGTCTACGAGGAGGTTTCCGCCCGAGCATCATCGCC
TTTGCTGCCATATTTGAGTGCATTCGTAGTCTTTGTGGTGTCCGCCAAGA
CATGCGGGCTTCTCTCGGTGCCGAAGCAGGGGACGGCGTTTCGTTTCGGC
CCCGGAGAGGGTCAACAGCAGGTGTGTGATGGTGAGGCCGTGATGCGCCT
AGGAGCAACGAGCTACCTTGCTCGGCAAATGCTCATCTGGAGCGAGAGCG
ACGTCGCCAGAGTCGGCGCCCTTGTGGTGGATTCGTGCGCCAGACGGTGG
GGAATCAAGGTCTTGGTTACGAGTTGCGGCGGTGTTCCTCTGGCGGTGGG
AACGATAGCTTTTTTAGTCGGAGTCATCATGGCGAATCTGTTCGTACCGC
ACAGCCTCGTGGCGTTCACTACCGCCGCAGACGTTCGGACGGCTTGGTAT
TGTCTCGGGACGTCGTTTTTTTACGTGGTGGGTGCGTGCGCGGTGGCAAC
CCTGATCGGTGCGGAGGCGGGACTGTTCGCCGTCACGGTTGTTATTTTCC
ACGTGTATTGGGTGAGTCTTCTGTACGGCAATATCGCCCTCAGTTTCCCT
CGCGACCACTATGCTGGTGGAGTGAACGAGAGAGACGACGAGTGGGAGCA
GTTGCTCAAGGCCGTACGGCACCGGGGCATCGGCCAGACAGTGCTGGGCA
TCAGTGACGAGGGATTGCTTGCTGGTTGGCGATGTTTGTCTCCCGCAAAG
CAGGAAGAATTTTCCCCCTTGGTGGCGTCCTTGGTGAGAGGGGACAAAGC
TAAGTGGGAAGTACTCGGGGACGCGAGAATGGCAAACGGTTATGGCATGT
TCCACAAAAACTGGCTTGGGGTCGACCCTCCCATTAGATTGACGAGGAAG
AACGATGTTATCGAACCGGTGTACGGCGGAGAGTCGATGGACTACGATTT
CAATCATGCCGCCGTGAAGCGGAAGCTTGTTCAGGTTGGGCTAGATACCA
CGGCCGGGACCAACTCGACAAATCCTGTTTACGGAAATGAGGGCACCCTC
CCTGTCTTCTACGAGCAGGAAGAAGATTGTCTCGACGAGCACGGCGTGCC
GAAGCTTTCACTTCTCTGTGTCCAGCCTTTTCGCCATGAGAGGTGTAGAA
AGCGGCAACAGGCAGGGACTGGCTATTGCAGGTCTTCCGGCTCGCCACCG
GTCACCTTGGAAGAGGCCTGGCTACTCCTGTTTGCGGCGCTGTGGGGATC
TTGGAGCTGTCTAGGTTGGATGGAATGTGACGGGGTGGGCGGGGAACCCC
CGGCGAAGGAATTTGCCCTCGTGTTTTGTGTGTTCAACGCGTTTTTATCT
CAGCGTGTCGAGTATCTGTGGGCGTATCGGGCAACTCCTCTGTTGATCAA
GCGCTTAATCGCGAAGAACACGGCCGTGGTCAGGGTCATCTGGATCTTGT
TCGCCTTCTTCGTGTTCACCGAGGTCGAGAAGGCTTCCCTCTATGTTATT
TTGCTTGTCTACTTGGCCGTAATCGTTCCAGTGAGGTGGGTGGAACGTCG
AAATTGGGCCGAAGATGCGTGCTGGAGGTGGGGGGTGGAGGATGGTAAAC
CCGTTGGCGCGTTCCCTGTTTGGGCCGAAACCAGCGACGGCGACGAAGCA
GGGCAGTGGACTCAGTCTTGCATAGGGCTGACCGTGAAGTGTGCTTGA
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