mRNA_Ecto-sp13_S_contig69621.17972.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69621.17972.1
Unique NamemRNA_Ecto-sp13_S_contig69621.17972.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69621.17972.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.480e-29
Identity = 91/112 (81.25%), Postives = 92/112 (82.14%), Query Frame = -2 
Query:    3 FGSGNGSVSSEQKGLVVIRIGPTTPAXXXXXXXXXXXXXXXXXXXXXXX-----ASAEDRGMKIPGAAAAAAAGEDAAFLEMDVVVNPPAVTSLECSITQPMAGFSVVAQAE 323
            FGSG GS SSEQKGLVVIRIGPTTPA  XXXXXXXXXXXXXXXXX         ASAED G+KIPGAAA    GEDA FLEMDVVVNPPAVTSLECSI QPMAGFSVVAQAE
Sbjct:  160 FGSGKGSTSSEQKGLVVIRIGPTTPATAXXXXXXXXXXXXXXXXXSPSAGAADAASAEDGGIKIPGAAA----GEDAGFLEMDVVVNPPAVTSLECSIAQPMAGFSVVAQAE 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69621.17972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRV9_9PHAE2.480e-2981.25Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69621contigEcto-sp13_S_contig69621:385..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463956.0385506-CDS-Ecto-sp13_S_contig69621:384..7081681463956.0385506-CDS-Ecto-sp13_S_contig69621:384..708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69621 385..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69621.17972.1prot_Ecto-sp13_S_contig69621.17972.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69621 385..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69621.17972.1

>prot_Ecto-sp13_S_contig69621.17972.1 ID=prot_Ecto-sp13_S_contig69621.17972.1|Name=mRNA_Ecto-sp13_S_contig69621.17972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
ASAWATTEKPAMGWVMEHSSEVTAGGLTTTSISRKAASSPAAAAAAAPGI
FMPLSSALAVSAVSATGEGLVAASTAVAAAAVAGVVGPILITTKPFCSLL
TLPLPLPN
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mRNA from alignment at Ecto-sp13_S_contig69621:385..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69621.17972.1 ID=mRNA_Ecto-sp13_S_contig69621.17972.1|Name=mRNA_Ecto-sp13_S_contig69621.17972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69621:385..708+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCTGCCTGGGCTACGACCGAGAAGCCGGCCATGGGCTGGGTGATGGA
GCATTCCAGCGAGGTCACCGCGGGAGGGTTGACGACGACATCCATCTCTA
GGAAAGCCGCGTCTTCCCCTGCGGCGGCGGCGGCGGCGGCGCCCGGAATT
TTCATGCCTCTATCTTCGGCGCTAGCGGTGTCGGCGGTGTCGGCGACAGG
AGAGGGTTTGGTGGCAGCATCAACAGCAGTAGCAGCAGCAGCAGTTGCAG
GCGTCGTGGGGCCGATTCTGATAACCACCAAACCCTTTTGCTCGCTGCTG
ACGCTACCGTTGCCGCTGCCAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69621:385..708+

>mRNA_Ecto-sp13_S_contig69621.17972.1 ID=mRNA_Ecto-sp13_S_contig69621.17972.1|Name=mRNA_Ecto-sp13_S_contig69621.17972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69621:385..708+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCTGCCTGGGCTACGACCGAGAAGCCGGCCATGGGCTGGGTGATGGA
GCATTCCAGCGAGGTCACCGCGGGAGGGTTGACGACGACATCCATCTCTA
GGAAAGCCGCGTCTTCCCCTGCGGCGGCGGCGGCGGCGGCGCCCGGAATT
TTCATGCCTCTATCTTCGGCGCTAGCGGTGTCGGCGGTGTCGGCGACAGG
AGAGGGTTTGGTGGCAGCATCAACAGCAGTAGCAGCAGCAGCAGTTGCAG
GCGTCGTGGGGCCGATTCTGATAACCACCAAACCCTTTTGCTCGCTGCTG
ACGCTACCGTTGCCGCTGCCAAAT
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