mRNA_Ecto-sp13_S_contig69578.17968.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69578.17968.1
Unique NamemRNA_Ecto-sp13_S_contig69578.17968.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69578.17968.1 vs. uniprot
Match: D7FYL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL7_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 8.160e-60
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 1 
Query:    4 VEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQALLAREGEISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRKGISSQRRRYPDRDSSTKELIAGG 345
            VEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQ LLAREGEISTG STATDLRRELSRVRREFIMSTSNRSEQQSALLGSRR+GISSQRRR+PDRDSSTKELIAGG
Sbjct:  172 VEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQVLLAREGEISTGCSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRRGISSQRRRHPDRDSSTKELIAGG 285
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BLAST of mRNA_Ecto-sp13_S_contig69578.17968.1 vs. uniprot
Match: A0A6H5JZF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF3_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.260e-55
Identity = 105/114 (92.11%), Postives = 107/114 (93.86%), Query Frame = 1 
Query:    4 VEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQALLAREGEISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRKGISSQRRRYPDRDSSTKELIAGG 345
            VEQKIHELESQSRVNAAQAGEIEAQAAEIE HRKEI DLKQ     EGEISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRKGISSQRRR+PDRDSSTKEL+AGG
Sbjct:  124 VEQKIHELESQSRVNAAQAGEIEAQAAEIEFHRKEILDLKQ-----EGEISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRKGISSQRRRHPDRDSSTKELVAGG 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69578.17968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYL7_ECTSI8.160e-6096.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZF3_9PHAE3.260e-5592.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69578contigEcto-sp13_S_contig69578:3..656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size345
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.79751-CDS-Ecto-sp13_S_contig69578:2..2221681463955.79751-CDS-Ecto-sp13_S_contig69578:2..222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69578 3..222 -
1681463955.8081505-CDS-Ecto-sp13_S_contig69578:531..6561681463955.8081505-CDS-Ecto-sp13_S_contig69578:531..656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69578 532..656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69578.17968.1prot_Ecto-sp13_S_contig69578.17968.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69578 3..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69578.17968.1

>prot_Ecto-sp13_S_contig69578.17968.1 ID=prot_Ecto-sp13_S_contig69578.17968.1|Name=mRNA_Ecto-sp13_S_contig69578.17968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
QVEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQALLAREGE
ISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRKGISSQRRR
YPDRDSSTKELIAGG
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mRNA from alignment at Ecto-sp13_S_contig69578:3..656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69578.17968.1 ID=mRNA_Ecto-sp13_S_contig69578.17968.1|Name=mRNA_Ecto-sp13_S_contig69578.17968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69578:3..656- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAGAACAGAAAATACATGAGCTTGAATCCCAGTCCCGAGTCAACGC
TGCACAGGCAGGCGAAATTGAGGCCCAAGCGGCCGAGATCGAGCTCCACA
GGAAAGAGATTTTCGACTTGAAACAGTGAGTGTACCGCCTGGTATCGTTG
TTGCGGTTTCTGCCTTCGATGAAAGAAATGACGACGTCTAACCCTCTGAA
TATGTATTGTTTCGGGTACTCGACACGCGATACTGATCTTCAGGGACTTT
GGGGTTACGTGTATGTGTGTGGTAGGGCAGTAGGGCGGCGCCCCCCCCGG
AAGGGCACCACAGTCTCTCCCGCCCTATGCATACTTCCCTCTACTCTACT
CTAACGATGTTTATCACGTGCCTGGGGTCAACCTCTTCCAAACGTGTGTT
TTGTCTTGCCCAATTGTTTGCCCGGAACCGAAAGAGCGCTGCTTGCCAGA
GAAGGGGAAATATCGACGGGACGCAGCACCGCCACGGACCTGAGACGCGA
GTTGTCGCGCGTGAGAAGGGAATTTATCATGAGCACGTCCAACCGAAGCG
AGCAACAAAGCGCGTTGCTCGGCAGCCGCAGGAAAGGGATCTCGAGCCAA
AGACGGCGTTATCCTGACAGGGATTCATCGACGAAAGAGTTGATAGCCGG
TGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69578:3..656-

>mRNA_Ecto-sp13_S_contig69578.17968.1 ID=mRNA_Ecto-sp13_S_contig69578.17968.1|Name=mRNA_Ecto-sp13_S_contig69578.17968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69578:3..656- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAGAACAGAAAATACATGAGCTTGAATCCCAGTCCCGAGTCAACGC
TGCACAGGCAGGCGAAATTGAGGCCCAAGCGGCCGAGATCGAGCTCCACA
GGAAAGAGATTTTCGACTTGAAACAAGCGCTGCTTGCCAGAGAAGGGGAA
ATATCGACGGGACGCAGCACCGCCACGGACCTGAGACGCGAGTTGTCGCG
CGTGAGAAGGGAATTTATCATGAGCACGTCCAACCGAAGCGAGCAACAAA
GCGCGTTGCTCGGCAGCCGCAGGAAAGGGATCTCGAGCCAAAGACGGCGT
TATCCTGACAGGGATTCATCGACGAAAGAGTTGATAGCCGGTGGT
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