mRNA_Ecto-sp13_S_contig69536.17959.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69536.17959.1
Unique NamemRNA_Ecto-sp13_S_contig69536.17959.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69536.17959.1 vs. uniprot
Match: A0A6H5JFY5_9PHAE (Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY5_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.570e-36
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 MVARGTLLSVATGLTLNQAPRVACFCTVVRPSAHRARVHQGRATAVQHGSSRWNSNGFRGGARLGSAASFVRLRAVEEPAAA 246
            MVARG+LLSV  GLTLNQAPRVACFCTVVRPSAHRARVHQ RATA  H SSRWNSNGF+GGA LGSAAS VRLRAVEEPAAA
Sbjct:    1 MVARGSLLSVVMGLTLNQAPRVACFCTVVRPSAHRARVHQARATAAPHSSSRWNSNGFQGGASLGSAASLVRLRAVEEPAAA 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69536.17959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFY5_9PHAE4.570e-3687.80Protein-ribulosamine 3-kinase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69536contigEcto-sp13_S_contig69536:373..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size264
Hectar predicted targeting categorymitochondrion
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.2418413-CDS-Ecto-sp13_S_contig69536:372..6361681463955.2418413-CDS-Ecto-sp13_S_contig69536:372..636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69536 373..636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69536.17959.1prot_Ecto-sp13_S_contig69536.17959.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69536 373..636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69536.17959.1

>prot_Ecto-sp13_S_contig69536.17959.1 ID=prot_Ecto-sp13_S_contig69536.17959.1|Name=mRNA_Ecto-sp13_S_contig69536.17959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MVARGTLLSVATGLTLNQAPRVACFCTVVRPSAHRARVHQGRATAVQHGS
SRWNSNGFRGGARLGSAASFVRLRAVEEPAAAAAAAAA
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mRNA from alignment at Ecto-sp13_S_contig69536:373..636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69536.17959.1 ID=mRNA_Ecto-sp13_S_contig69536.17959.1|Name=mRNA_Ecto-sp13_S_contig69536.17959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69536:373..636+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCCAGAGGTACCCTTCTGTCCGTTGCGACGGGATTGACCTTAAA
CCAGGCGCCTCGTGTAGCGTGCTTCTGCACGGTTGTACGGCCCTCTGCAC
ATCGAGCACGTGTACATCAAGGACGAGCAACCGCAGTACAGCACGGCAGC
TCAAGATGGAATAGCAACGGGTTCCGAGGCGGGGCCAGATTGGGGTCGGC
GGCATCTTTTGTGCGACTTCGAGCGGTGGAGGAGCCAGCGGCGGCGGCGG
CAGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69536:373..636+

>mRNA_Ecto-sp13_S_contig69536.17959.1 ID=mRNA_Ecto-sp13_S_contig69536.17959.1|Name=mRNA_Ecto-sp13_S_contig69536.17959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69536:373..636+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCCAGAGGTACCCTTCTGTCCGTTGCGACGGGATTGACCTTAAA
CCAGGCGCCTCGTGTAGCGTGCTTCTGCACGGTTGTACGGCCCTCTGCAC
ATCGAGCACGTGTACATCAAGGACGAGCAACCGCAGTACAGCACGGCAGC
TCAAGATGGAATAGCAACGGGTTCCGAGGCGGGGCCAGATTGGGGTCGGC
GGCATCTTTTGTGCGACTTCGAGCGGTGGAGGAGCCAGCGGCGGCGGCGG
CAGCAGCAGCAGCA
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