mRNA_Ecto-sp13_S_contig6953.17958.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6953.17958.1
Unique NamemRNA_Ecto-sp13_S_contig6953.17958.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: D8LP63_ECTSI (Adenosinetriphosphatase n=2 Tax=root TaxID=1 RepID=D8LP63_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.000e-65
Identity = 110/121 (90.91%), Postives = 113/121 (93.39%), Query Frame = 3 
Query:  240 P*FFIFDEKNVEGKLTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENFLACLKSP 602
            P  FIFDEKNVEGKLTEIVEQQKRLQLQ+DIGEID DTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNV+RNLYENF    + P
Sbjct:   81 PDSFIFDEKNVEGKLTEIVEQQKRLQLQRDIGEIDPDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVMRNLYENFFGVFEKP 201
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: A0A6H5KKN2_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN2_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.100e-56
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 3 
Query:  240 P*FFIFDEKNVEGKLTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENFLACLKSP 602
            P  FIFDEK+VE KL EIVEQQKRLQLQ+DIGEID DTDLR+VIVLDDMGYNRK L+SQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNV+RNLYENF    + P
Sbjct:  533 PDSFIFDEKHVEAKLIEIVEQQKRLQLQRDIGEIDEDTDLRIVIVLDDMGYNRKILSSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVMRNLYENFFGVFEKP 653
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: Q6XM75_9PHYC (FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM75_9PHYC)

HSP 1 Score: 121 bits (304), Expect = 5.180e-29
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 3 
Query:  240 P*FFIFDEKNVEGKLTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENF 581
            P  FIFD+  VE KLT+IVE QK++ +QK +GE   D D R+V+VLDD+GY +  L  +IL  IFMNGRH+ I+LIVA Q+ M L   LR+N DYV  LK+ N N I+NL+E +
Sbjct:   70 PDLFIFDDSMVEEKLTQIVESQKKIGMQKQLGECGDDVDSRIVVVLDDVGYKKNTLKCEILRQIFMNGRHHQISLIVACQYCMDLAIDLRTNADYVFVLKQNNMNSIKNLHETY 183
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: B5LWH6_9PHYC (Putative VV A32 ATPase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH6_9PHYC)

HSP 1 Score: 114 bits (286), Expect = 1.720e-26
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 3 
Query:  189 MC-FLGHGREQPVLLQTHP*FFIFDEKNVEGKLTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENF 581
            MC F G         +  P  FI+D+ +VE KL EIV+ QK   +QK +GE   D D R+ IVLDD+GY +  L S+I+  IFMNGRH+ I L+VA Q+ M +   LR+N DYV  LK+ N + I+NL+E +
Sbjct:   63 MCVFSGTEESNGFYKEFVPGLFIYDDSDVENKLNEIVDSQKETAMQKQLGEASEDLDSRIAIVLDDVGYKKNILKSEIIRQIFMNGRHHQIYLVVACQYCMDVGQDLRTNADYVYVLKQNNMSSIKNLHETY 194
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: A0A835Z4N1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.400e-15
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  282 LTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENF 581
            LT I   QK + L++  G +D + D R++IVLDD  +++K  TSQ++  +  NGRHY +TLI+ +Q+++ L PA+RSN D+    ++  K     LY  F
Sbjct:   85 LTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQF 184
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: A0A6C0LE87_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LE87_9ZZZZ)

HSP 1 Score: 81.3 bits (199), Expect = 3.230e-14
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:  578 FFGVFEKPVHFKNAFDACTKDFGCLILNNTVTSVLVNDTVNWYKATPNRVFKFGSKEFWEYHDERYV---SIQDRYL 799
            FFG+F     F+   ++CT+ F CL+L+NT  S  +ND + WY+A PNR FK GSKE W YH   Y    SI+D  L
Sbjct:  180 FFGIFPHVDTFREVMNSCTEGFDCLVLDNTSRSNKINDCIFWYRAKPNRKFKIGSKELWNYHKNNYNDKHSIEDEQL 256
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: A0A835YWY0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.420e-12
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 3 
Query:  282 LTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKE-GNKN 554
            L  + + QK L LQK +G+++ DTD R+V+V+DD  Y+++ + S  L  IFMNGRH+ I  IV +Q+++ L  A+RSN D    LKE  +KN
Sbjct:   79 LDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKN 170
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: A0A6C0BNY4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BNY4_9ZZZZ)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-11
Identity = 39/114 (34.21%), Postives = 65/114 (57.02%), Query Frame = 3 
Query:  240 P*FFIFDEKNVEGKLTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENF 581
            P  FI+   + +  +  I  Q+K   + K+ G+     D R  +++DD  Y++K     ++  +FMNGRH+D+ +++ +Q+VM +TP +R+NTDYV  LKE  K     LY  F
Sbjct:   72 PPLFIYKNFDADALVRLINRQKKMKHMWKENGD-SLPFDHRAFVLMDDCMYDKKNFRGPLMRELFMNGRHWDLFVLITLQYVMDITPEIRTNTDYVFALKENVKKNRERLYNEF 184
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: Q91DI0_HAV01 (AGB-1 n=1 Tax=Heterosigma akashiwo virus 01 TaxID=97195 RepID=Q91DI0_HAV01)

HSP 1 Score: 72.0 bits (175), Expect = 5.910e-11
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 3 
Query:  369 IVLDDMGYNRKALTSQI-LTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENFLACLKS 599
            I+LDD  Y+ K +   I +  IF+NGRHY I LI+++Q+VM L  +LRSN DYV CL+E N   +  LY++F     S
Sbjct:  107 IILDDCMYDSKTIGRDINIREIFLNGRHYQIFLILSLQYVMDLPVSLRSNIDYVFCLRENNLQNVEKLYKSFFGIFPS 184
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BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Match: A0A0P0YND4_9PHYC (Putative VV A32 virion packaging ATPase n=1 Tax=Yellowstone lake phycodnavirus 2 TaxID=1586714 RepID=A0A0P0YND4_9PHYC)

HSP 1 Score: 70.9 bits (172), Expect = 1.260e-10
Identity = 37/114 (32.46%), Postives = 68/114 (59.65%), Query Frame = 3 
Query:  240 P*FFIFDEKNVEGKLTEIVEQQKRLQLQKDIGEIDRDTDLRVVIVLDDMGYNRKALTSQILTFIFMNGRHYDITLIVAIQHVMQLTPALRSNTDYVICLKEGNKNVIRNLYENF 581
            P  F++ + N +  + +I+E+Q+++        + ++    V I++DD  Y+R  +   ++  +FMNGRH++I  ++  Q+VM +TP +RSNTDYV  L++  K    NLY+ F
Sbjct:   64 PDLFVYGDYNKDA-IEKIMERQRKI-----AARVGKEALPPVFILMDDCMYDRAFMRDTVMRSLFMNGRHWNIFFMMTTQYVMDMTPMIRSNTDYVFVLRDNVKQNRENLYKCF 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6953.17958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP63_ECTSI1.000e-6590.91Adenosinetriphosphatase n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5KKN2_9PHAE1.100e-5685.95SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q6XM75_9PHYC5.180e-2953.51FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWH6_9PHYC1.720e-2645.45Putative VV A32 ATPase n=1 Tax=Feldmannia species ... [more]
A0A835Z4N1_9STRA9.400e-1539.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0LE87_9ZZZZ3.230e-1446.75Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A835YWY0_9STRA1.420e-1244.57Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A6C0BNY4_9ZZZZ1.160e-1134.21Uncharacterized protein n=1 Tax=viral metagenome T... [more]
Q91DI0_HAV015.910e-1146.15AGB-1 n=1 Tax=Heterosigma akashiwo virus 01 TaxID=... [more]
A0A0P0YND4_9PHYC1.260e-1032.46Putative VV A32 virion packaging ATPase n=1 Tax=Ye... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6953contigEcto-sp13_S_contig6953:5247..6114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViruses
Stop1
Start1
Seed ortholog score166.8
Seed ortholog evalue5e-39
Seed eggNOG ortholog654926.Q8QNN5_ESV1K
Model size868
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.adenyl ribonucleotide binding
EggNOG OGs4QASH@10239,4QVRB@35237
Cds size285
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.1978066-UTR-Ecto-sp13_S_contig6953:5246..58291681463955.1978066-UTR-Ecto-sp13_S_contig6953:5246..5829Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6953 5247..5829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.2102025-CDS-Ecto-sp13_S_contig6953:5829..61141681463955.2102025-CDS-Ecto-sp13_S_contig6953:5829..6114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6953 5830..6114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6953.17958.1prot_Ecto-sp13_S_contig6953.17958.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6953 5830..6114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6953.17958.1

>prot_Ecto-sp13_S_contig6953.17958.1 ID=prot_Ecto-sp13_S_contig6953.17958.1|Name=mRNA_Ecto-sp13_S_contig6953.17958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MNNGAPTMASTTGSINVNLKRFDCRAAMSVKCNAVVIGKRNTGKSVVIAE
LLYYLNRQKVPRACVFSATEESNRFFCRHIPDSLFLTRRTWRAS*
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mRNA from alignment at Ecto-sp13_S_contig6953:5247..6114-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6953.17958.1 ID=mRNA_Ecto-sp13_S_contig6953.17958.1|Name=mRNA_Ecto-sp13_S_contig6953.17958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=868bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:5247..6114- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATAACGGAGCACCGACGATGGCGTCAACGACGGGTTCGATCAACGT
CAACCTGAAAAGGTTTGACTGTAGAGCCGCAATGTCTGTCAAATGCAACG
CTGTTGTCATCGGCAAGAGAAACACTGGAAAGAGCGTCGTAATTGCGGAG
CTGCTGTACTACCTAAATAGGCAGAAAGTGCCTCGGGCATGTGTTTTCTC
GGCCACGGAAGAGAGCAACCGGTTCTTTTGCAGACACATCCCTGATTCTT
TATTTTTGACGAGAAGAACGTGGAGGGCAAGTTGACAGAGATTGTCGAGC
AGCAGAAACGTCTGCAGCTGCAGAAGGACATTGGTGAAATTGATCGCGAT
ACAGACTTGCGTGTCGTCATCGTCCTGGACGACATGGGTTACAATCGAAA
GGCGCTGACGAGCCAGATTCTCACATTTATCTTTATGAACGGGCGGCACT
ACGATATCACGCTGATCGTTGCTATCCAGCATGTGATGCAGCTCACGCCT
GCACTACGGAGCAACACAGATTATGTGATTTGTCTCAAGGAAGGAAATAA
GAATGTCATACGCAACCTGTATGAGAATTTTTTGGCGTGTTTGAAAAGCC
CGTGCATTTTAAGAATGCGTTTGATGCGTGCACGAAAGACTTTGGTTGCT
TGATTCTCAACAACACCGTGACGAGCGTTCTCGTTAACGACACAGTCAAC
TGGTACAAGGCGACTCCCAACCGTGTGTTCAAGTTTGGGTCGAAGGAGTT
TTGGGAGTACCATGACGAACGGTACGTCTCCATTCAGGACAGATATCTGC
TTCAGAACAGGCCAGCGGCCGACACGACGATGTCAAGCGACGGCACCTTT
GTCATTCACAAACACGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6953:5247..6114-

>mRNA_Ecto-sp13_S_contig6953.17958.1 ID=mRNA_Ecto-sp13_S_contig6953.17958.1|Name=mRNA_Ecto-sp13_S_contig6953.17958.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6953:5247..6114- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATAACGGAGCACCGACGATGGCGTCAACGACGGGTTCGATCAACGT
CAACCTGAAAAGGTTTGACTGTAGAGCCGCAATGTCTGTCAAATGCAACG
CTGTTGTCATCGGCAAGAGAAACACTGGAAAGAGCGTCGTAATTGCGGAG
CTGCTGTACTACCTAAATAGGCAGAAAGTGCCTCGGGCATGTGTTTTCTC
GGCCACGGAAGAGAGCAACCGGTTCTTTTGCAGACACATCCCTGATTCTT
TATTTTTGACGAGAAGAACGTGGAGGGCAAGTTGA
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