mRNA_Ecto-sp13_S_contig69489.17946.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69489.17946.1
Unique NamemRNA_Ecto-sp13_S_contig69489.17946.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69489.17946.1 vs. uniprot
Match: A0A4R3MG93_9HYPH (ATPase family protein associated with various cellular activities (AAA) n=1 Tax=Tepidamorphus gemmatus TaxID=747076 RepID=A0A4R3MG93_9HYPH)

HSP 1 Score: 114 bits (285), Expect = 7.440e-27
Identity = 70/142 (49.30%), Postives = 90/142 (63.38%), Query Frame = 1 
Query:    1 MDASSVRIPEARIVEAYPAALGLMENAQVEEALPRPADAP-GRTRFVSPIA---GASAPRRLVRANLEAALRKSGGDDPLLSTREHGILVSLRRALAVGMTVSEFFIEPLGYLDLGEKKRSSGLSAADETQFRSLVRARALV 414
            M+A SVR+PE RI + Y AALGL+ NA+  +A       P G  RF+SP+A   GA++  R  R +LEA LR+   D PLL    H +L   RRALAVGM + E F+EPL +LDLG++ R   L  AD  +FR LVRA+ALV
Sbjct:    1 MEARSVRVPEERIRDNYAAALGLIRNAEAPDAAATGDGRPTGVARFISPVAPAPGAASAGRRSRVDLEAVLREDESD-PLLPPERHAVLFEARRALAVGMAIGEMFVEPLSFLDLGDRNRKGTLHGADLDRFRMLVRAKALV 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69489.17946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4R3MG93_9HYPH7.440e-2749.30ATPase family protein associated with various cell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69489contigEcto-sp13_S_contig69489:295..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size414
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463954.0134523-CDS-Ecto-sp13_S_contig69489:294..7081681463954.0134523-CDS-Ecto-sp13_S_contig69489:294..708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69489 295..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69489.17946.1prot_Ecto-sp13_S_contig69489.17946.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69489 295..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69489.17946.1

>prot_Ecto-sp13_S_contig69489.17946.1 ID=prot_Ecto-sp13_S_contig69489.17946.1|Name=mRNA_Ecto-sp13_S_contig69489.17946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MDASSVRIPEARIVEAYPAALGLMENAQVEEALPRPADAPGRTRFVSPIA
GASAPRRLVRANLEAALRKSGGDDPLLSTREHGILVSLRRALAVGMTVSE
FFIEPLGYLDLGEKKRSSGLSAADETQFRSLVRARALV
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mRNA from alignment at Ecto-sp13_S_contig69489:295..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69489.17946.1 ID=mRNA_Ecto-sp13_S_contig69489.17946.1|Name=mRNA_Ecto-sp13_S_contig69489.17946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69489:295..708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCTAGCTCGGTTCGGATTCCCGAAGCACGGATTGTTGAAGCCTA
TCCGGCAGCGCTCGGCTTGATGGAAAATGCGCAAGTGGAAGAGGCGCTGC
CCCGCCCGGCTGATGCGCCGGGCAGGACCCGTTTCGTCTCGCCGATCGCG
GGTGCGTCGGCGCCACGGCGCTTGGTGCGCGCAAACCTTGAAGCGGCGCT
TCGTAAGTCCGGCGGTGATGATCCTCTGCTTTCCACCCGCGAGCACGGCA
TATTGGTGTCCCTGCGGCGGGCTTTGGCTGTCGGGATGACGGTTTCGGAG
TTTTTCATTGAGCCGCTGGGGTATTTGGACCTTGGTGAGAAGAAACGTTC
CTCGGGCCTCTCGGCAGCGGACGAAACCCAGTTTCGTTCGCTTGTGCGGG
CGAGGGCGTTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69489:295..708+

>mRNA_Ecto-sp13_S_contig69489.17946.1 ID=mRNA_Ecto-sp13_S_contig69489.17946.1|Name=mRNA_Ecto-sp13_S_contig69489.17946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69489:295..708+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCTAGCTCGGTTCGGATTCCCGAAGCACGGATTGTTGAAGCCTA
TCCGGCAGCGCTCGGCTTGATGGAAAATGCGCAAGTGGAAGAGGCGCTGC
CCCGCCCGGCTGATGCGCCGGGCAGGACCCGTTTCGTCTCGCCGATCGCG
GGTGCGTCGGCGCCACGGCGCTTGGTGCGCGCAAACCTTGAAGCGGCGCT
TCGTAAGTCCGGCGGTGATGATCCTCTGCTTTCCACCCGCGAGCACGGCA
TATTGGTGTCCCTGCGGCGGGCTTTGGCTGTCGGGATGACGGTTTCGGAG
TTTTTCATTGAGCCGCTGGGGTATTTGGACCTTGGTGAGAAGAAACGTTC
CTCGGGCCTCTCGGCAGCGGACGAAACCCAGTTTCGTTCGCTTGTGCGGG
CGAGGGCGTTGGTG
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