mRNA_Ecto-sp13_S_contig69388.17933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69388.17933.1
Unique NamemRNA_Ecto-sp13_S_contig69388.17933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: A0A067CGD4_SAPPC (Cnd1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGD4_SAPPC)

HSP 1 Score: 64.3 bits (155), Expect = 7.640e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW 135
            GK CL D+A AK S+ +F+REL T+   A+RSN L+VLGDLC+RW
Sbjct:  880 GKACLADEAFAKESITMFMRELQTSPIEAIRSNILLVLGDLCIRW 924
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: A0A7S1HFU5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HFU5_HEMAN)

HSP 1 Score: 62.8 bits (151), Expect = 2.000e-10
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW 135
            GK+CL D  LAK+SVNLF+REL    +P +R+N LVVL DLCVR+
Sbjct:   47 GKICLSDATLAKKSVNLFLRELSCTPSPVLRNNVLVVLSDLCVRY 91
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: A0A7S2L2Y1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L2Y1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.690e-10
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAA---PAVRSNALVVLGDLCVRW 135
            GKLC+RD  LAK  VNLF REL +      P+V+SNAL+VLGDLCVR+
Sbjct:   33 GKLCIRDAKLAKNCVNLFARELYSEEGHCNPSVQSNALLVLGDLCVRY 80
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-9
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAV 90
            GKLCLRDKALAKRSVNLFVRELDTAAAPAV
Sbjct: 1067 GKLCLRDKALAKRSVNLFVRELDTAAAPAV 1096
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-9
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAV 90
            GKLCLRDKALAKRSVNLFVRELDTAAAPAV
Sbjct:  223 GKLCLRDKALAKRSVNLFVRELDTAAAPAV 252
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: H3GMN9_PHYRM (Cnd1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMN9_PHYRM)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW 135
            GKLCLRD+ LAK+ V +F+REL T     +RSN L++LGDLC+R+
Sbjct:  984 GKLCLRDQELAKKCVTMFIRELRTCDEQDIRSNILLILGDLCIRY 1028
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: A0A662Y756_9STRA (Cnd1 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y756_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW 135
            GKLCLRD+ LAK+ V +F+REL T     +RSN L++LGDLC+R+
Sbjct:  209 GKLCLRDQNLAKKCVTMFIRELRTCQEQDIRSNILLILGDLCIRY 253
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: M4BIG4_HYAAE (Cnd1 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIG4_HYAAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW 135
            GKLCLRD  LAK+ + +F+REL T     +RSN L++LGDLC+R+
Sbjct: 1018 GKLCLRDSGLAKKCMTMFIRELRTCEEQDIRSNILLILGDLCIRY 1062
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: A0A5D6XUH5_9STRA (Cnd1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUH5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.450e-9
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW 135
            GKLCLRD+ LAK  + + +REL T A   +RSN L++LGDLC+R+
Sbjct: 1042 GKLCLRDQELAKSCITMLIRELRTCAVQDIRSNILLILGDLCIRY 1086
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BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Match: A0A3M6VPA0_9STRA (Cnd1 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPA0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.090e-9
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW 135
            GKLCLRD  LAK+ + +F+REL T     +RSN L++LGDLC+R+
Sbjct: 1001 GKLCLRDSDLAKKCMTMFIRELRTCEEQDIRSNILLILGDLCIRY 1045
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69388.17933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CGD4_SAPPC7.640e-1160.00Cnd1 domain-containing protein n=2 Tax=Saprolegnia... [more]
A0A7S1HFU5_HEMAN2.000e-1062.22Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2L2Y1_9STRA9.690e-1062.50Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
D7FP86_ECTSI1.270e-9100.00Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JKF8_9PHAE1.270e-9100.00Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
H3GMN9_PHYRM1.740e-957.78Cnd1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A662Y756_9STRA1.740e-957.78Cnd1 domain-containing protein (Fragment) n=2 Tax=... [more]
M4BIG4_HYAAE3.260e-955.56Cnd1 domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A5D6XUH5_9STRA4.450e-955.56Cnd1 domain-containing protein n=1 Tax=Pythium bra... [more]
A0A3M6VPA0_9STRA6.090e-955.56Cnd1 domain-containing protein n=2 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69388contigEcto-sp13_S_contig69388:83..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.9
Seed ortholog evalue5.7e-09
Seed eggNOG ortholog112098.XP_008605636.1
Preferred nameNCAPD3
Model size135
KEGG koko:K08592,ko:K11491
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001674,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007060,GO:0007076,GO:0007080,GO:0007140,GO:0007275,GO:0007276,GO:0008150,GO:0008608,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010032,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030261,GO:0031323,GO:0031324,GO:0031618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035064,GO:0042393,GO:0042585,GO:0043073,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045910,GO:0045934,GO:0045950,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051304,GO:0051307,GO:0051310,GO:0051315,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140030,GO:0140034,GO:1903046,GO:1903047,GO:1903775,GO:2000779,GO:2001020
Exons1
EggNOG free text desc.meiotic chromosome condensation
EggNOG OGsKOG0413@1,KOG0413@2759
EC3.4.22.68
Cds size135
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463952.9969819-CDS-Ecto-sp13_S_contig69388:82..2171681463952.9969819-CDS-Ecto-sp13_S_contig69388:82..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69388 83..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69388.17933.1prot_Ecto-sp13_S_contig69388.17933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69388 83..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69388.17933.1

>prot_Ecto-sp13_S_contig69388.17933.1 ID=prot_Ecto-sp13_S_contig69388.17933.1|Name=mRNA_Ecto-sp13_S_contig69388.17933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRW
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mRNA from alignment at Ecto-sp13_S_contig69388:83..217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69388.17933.1 ID=mRNA_Ecto-sp13_S_contig69388.17933.1|Name=mRNA_Ecto-sp13_S_contig69388.17933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69388:83..217- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGCTGTGCCTCAGGGACAAGGCCTTGGCGAAGCGCAGCGTGAACCT
CTTCGTGAGGGAGTTAGACACGGCAGCGGCCCCCGCCGTCCGGAGTAACG
CCCTCGTCGTCCTTGGAGACCTCTGCGTCAGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69388:83..217-

>mRNA_Ecto-sp13_S_contig69388.17933.1 ID=mRNA_Ecto-sp13_S_contig69388.17933.1|Name=mRNA_Ecto-sp13_S_contig69388.17933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69388:83..217- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGCTGTGCCTCAGGGACAAGGCCTTGGCGAAGCGCAGCGTGAACCT
CTTCGTGAGGGAGTTAGACACGGCAGCGGCCCCCGCCGTCCGGAGTAACG
CCCTCGTCGTCCTTGGAGACCTCTGCGTCAGGTGG
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