mRNA_Ecto-sp13_S_contig69299.17923.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69299.17923.1
Unique NamemRNA_Ecto-sp13_S_contig69299.17923.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69299.17923.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.630e-8
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 2 
Query:  146 KIVSDERFEDIILQAISNDYDYVRQTSFRVR 238
            +I+SDERFED+ILQAISNDYDYVR TSFRVR
Sbjct:   26 EIISDERFEDVILQAISNDYDYVRPTSFRVR 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69299.17923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE2.630e-887.10Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69299contigEcto-sp13_S_contig69299:287..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463951.9068794-CDS-Ecto-sp13_S_contig69299:286..3611681463951.9068794-CDS-Ecto-sp13_S_contig69299:286..361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69299 287..361 +
1681463951.9185836-CDS-Ecto-sp13_S_contig69299:481..6491681463951.9185836-CDS-Ecto-sp13_S_contig69299:481..649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69299 482..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69299.17923.1prot_Ecto-sp13_S_contig69299.17923.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69299 287..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69299.17923.1

>prot_Ecto-sp13_S_contig69299.17923.1 ID=prot_Ecto-sp13_S_contig69299.17923.1|Name=mRNA_Ecto-sp13_S_contig69299.17923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
DRFSILFFAPTGSAHTVVRHFEGKKQAEDPDDFFTKMEDLRERLKDMGEN
CLGREIRGHHSTGDLQRLRLRSPNQLPRSRL
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mRNA from alignment at Ecto-sp13_S_contig69299:287..651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69299.17923.1 ID=mRNA_Ecto-sp13_S_contig69299.17923.1|Name=mRNA_Ecto-sp13_S_contig69299.17923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69299:287..651+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGGTTCTCCATCCTCTTCTTCGCGCCCACGGGTTCAGCGCACACCGT
CGTACGCCATTTCGAAGGCAAGAAACAAAGGGAAGGACTTGGAGACGGAG
CAGCTGCGTGGTTGGCCCTTGCCGAAAAGTACGACAGCCACACCAAAGAA
ACGCGTCGGGCTTACCTCGAGGAGCTAACAACGAATAAAATGGCTCAAGC
CGAAGACCCGGATGACTTCTTCACCAAGATGGAAGACCTACGGGAGCGTC
TGAAGGATATGGGAGAAAATTGTCTCGGACGAGAGATTCGAGGACATCAT
TCTACAGGCGATCTCCAACGACTACGACTACGTTCGCCAAACCAGCTTCC
GCGTTCGCGACTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69299:287..651+

>mRNA_Ecto-sp13_S_contig69299.17923.1 ID=mRNA_Ecto-sp13_S_contig69299.17923.1|Name=mRNA_Ecto-sp13_S_contig69299.17923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69299:287..651+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGGTTCTCCATCCTCTTCTTCGCGCCCACGGGTTCAGCGCACACCGT
CGTACGCCATTTCGAAGGCAAGAAACAAGCCGAAGACCCGGATGACTTCT
TCACCAAGATGGAAGACCTACGGGAGCGTCTGAAGGATATGGGAGAAAAT
TGTCTCGGACGAGAGATTCGAGGACATCATTCTACAGGCGATCTCCAACG
ACTACGACTACGTTCGCCAAACCAGCTTCCGCGTTCGCGACTT
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