mRNA_Ecto-sp13_S_contig6920.17913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6920.17913.1
Unique NamemRNA_Ecto-sp13_S_contig6920.17913.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: D7FYV7_ECTSI (Anaphase-promoting complex subunit 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYV7_ECTSI)

HSP 1 Score: 415 bits (1067), Expect = 7.150e-146
Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 1 
Query:    1 MADDSQVSQQPAQPPEAKTEASELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            MADDSQVSQQPAQPPEAKTEASELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGA AIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR
Sbjct:    1 MADDSQVSQQPAQPPEAKTEASELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAAAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 210
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: W7U0V1_9STRA (Anaphase-promoting complex, subunit 10/DOC domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V1_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.810e-68
Identity = 110/198 (55.56%), Postives = 141/198 (71.21%), Query Frame = 1 
Query:   88 REIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPL---FAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPR--------------LASVQHDPSLLEFISPEFETFACIR 630
            R+IG EAVWSLS+AKPGNGV+Q+RDD  DTYWQSDG QPHLIN+QFHKKMT++E++ +LD+S DESYTPKK+SI+AG++FHDLVE+    L EP GWV+VP+   +A    G   +    AG   G VLRA F+QI ++AMHQNGRDTH+RQVKV+GPR              +AS+    ++ EF S E   F+ +R
Sbjct:   24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: F0XYN0_AURAN (Anaphase-promoting complex subunit 10 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYN0_AURAN)

HSP 1 Score: 217 bits (552), Expect = 8.640e-68
Identity = 110/179 (61.45%), Postives = 132/179 (73.74%), Query Frame = 1 
Query:   46 EAKTEASELDYV-TRREIGREAVWSLSSAKPGNGVDQLR--------DDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPR 555
            EA+T  SELD     REIG EAVWSLS+AKPGNGV+Q+R        D++T+TYWQSDGGQPHLINIQFHKKM++ E+AF+LD+  DESYTPKK+SIRAG++FHDLVEV V +LHEP GWV V L                   +G  LRA F+Q+CVV+MHQNGRDTH+RQ K+FGPR
Sbjct:    6 EARTGTSELDVSPANREIGDEAVWSLSTAKPGNGVEQIRAAPGGKRRDENTETYWQSDGGQPHLINIQFHKKMSISEMAFYLDYGLDESYTPKKMSIRAGTTFHDLVEVEVVDLHEPTGWVTVALSH----------------GDGKALRAFFLQVCVVSMHQNGRDTHVRQAKIFGPR 168
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: A0A7S3AMX8_9EUKA (Anaphase-promoting complex subunit 10 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AMX8_9EUKA)

HSP 1 Score: 211 bits (538), Expect = 2.810e-65
Identity = 110/183 (60.11%), Postives = 135/183 (73.77%), Query Frame = 1 
Query:   85 RREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRV-PLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            RREIG +AVWSLS+AKPGNGV+QLRDDSTDTYWQSDG QPHLINIQF KKM V EI  + DF  DESYTP K+SIRAG++FHDL E+ V+EL+EP GWV + P   P         +D A G++  +LR HF+Q+ ++A HQNGRDTHIRQ+K++ PR    QH   L EF S  F+ +AC+R
Sbjct:   51 RREIGEQAVWSLSTAKPGNGVEQLRDDSTDTYWQSDGPQPHLINIQFPKKMRVHEIQIYTDFKHDESYTPSKISIRAGTTFHDLQEIHVEELNEPSGWVTILPPREP--------TSDTAPGSQ--LLRTHFIQVAILANHQNGRDTHIRQIKIYTPRKDMGQH-MGLPEFNSIAFQQYACLR 222
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: A0A485KIW7_9STRA (Anaphase-promoting complex subunit 10 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIW7_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.420e-64
Identity = 109/182 (59.89%), Postives = 129/182 (70.88%), Query Frame = 1 
Query:   85 RREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            +REIG EAVW+LSSAKPGNGV QLRDD+ DTYWQSDG QPHLINIQFHKKMT+ E+A +LD+  DESYTPK L IRAG++FHDLV++    + EP GWV +PL      GA A         E P LR  F+QI V  MHQNGRDTHIRQVKVF PR  ++    +  E  + +F +FACIR
Sbjct:    3 KREIGDEAVWTLSSAKPGNGVHQLRDDNMDTYWQSDGPQPHLINIQFHKKMTIREVALYLDYKLDESYTPKMLMIRAGTTFHDLVDIKAHTIAEPNGWVTIPLTQTVVSGAAAF--------EKP-LRTFFLQISVTGMHQNGRDTHIRQVKVFAPRQTALLGLDAAPEPSTVDFSSFACIR 175
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: A0A7S0RL68_9CHLO (Anaphase-promoting complex subunit 10 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RL68_9CHLO)

HSP 1 Score: 208 bits (529), Expect = 1.560e-64
Identity = 101/188 (53.72%), Postives = 132/188 (70.21%), Query Frame = 1 
Query:   67 ELDYVTRREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            E  + +R EIG+ AVWS++SAKPGNGV+ LRDD+ +TYWQSDGGQPHLINIQF KK+ + E+  + DF  DESYTP KLSIRAG+SFHDL E+ V +L EPVGW+  PL   G              +    +RA+FVQ+ V++ HQNGRDTHIRQVK++GP +   +     L++ SPEF+ F+C+R
Sbjct:    5 EFKHDSRAEIGKLAVWSVTSAKPGNGVEMLRDDNLETYWQSDGGQPHLINIQFQKKVRLKELEIYADFKQDESYTPNKLSIRAGNSFHDLREIRVVDLEEPVGWMSFPLTPDG--------------SNQEYMRAYFVQLAVLSNHQNGRDTHIRQVKIYGPHVDLARAMGHPLQYTSPEFQMFSCVR 178
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: A0A8K1FCQ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCQ9_PYTOL)

HSP 1 Score: 206 bits (524), Expect = 7.350e-64
Identity = 106/182 (58.24%), Postives = 129/182 (70.88%), Query Frame = 1 
Query:   85 RREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            RREIG +AVWSLSSAKPGNGVDQLRD++ DTYWQSDG QPHLINIQF KKMT+ EIA +LD   DESYTP+K+SIRAGS+ HDL E+  +++ EP GWV + L  P                E P LR  F+Q+ V+AMHQNGRDTHIRQVK++ PR  +   D S+ E  S +F  ++CIR
Sbjct:    5 RREIGDDAVWSLSSAKPGNGVDQLRDNNVDTYWQSDGSQPHLINIQFFKKMTISEIALYLDHKLDESYTPRKISIRAGSTVHDLKEILAQDIEEPNGWVSIQLAGPDD-------------PETP-LRTFFLQVAVLAMHQNGRDTHIRQVKIYAPREKTNTLDRSIPEPSSEQFWAYSCIR 172
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: H3GWS0_PHYRM (Anaphase-promoting complex subunit 10 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWS0_PHYRM)

HSP 1 Score: 205 bits (521), Expect = 2.630e-63
Identity = 101/182 (55.49%), Postives = 134/182 (73.63%), Query Frame = 1 
Query:   85 RREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            RRE+G +AVWSLSSAKPGNGVDQLRD++ DTYWQSDG QPHLINIQF +KM + E+A +LD+  DESYTPKK++IR+GS+ HDL E+ V+++ EP GW+ +PL+                G+E   LR  F+QI ++AMHQNGRDTHIRQVK++ PR A+V  D ++ +  +P F  ++CIR
Sbjct:   12 RREVGDDAVWSLSSAKPGNGVDQLRDNNMDTYWQSDGMQPHLINIQFSRKMAIKEVALYLDYKLDESYTPKKIAIRSGSTAHDLKEIHVQQIVEPNGWISIPLYT-------------GDGSEQTPLRTFFLQIVLLAMHQNGRDTHIRQVKIYAPREANVL-DWTIPDATTPLFAAYSCIR 179
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: A0A6A4EML9_9STRA (Anaphase-promoting complex subunit 10 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EML9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.380e-63
Identity = 102/182 (56.04%), Postives = 131/182 (71.98%), Query Frame = 1 
Query:   85 RREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            RRE+G +AVWSLSSAKPGNGVDQLRD+S DTYWQSDG QPHL+NIQF +KM V E+A +LD+  DESYTPKK++IR+GS+ HDL E+ V+ + EP GW+ +PL +                 E   LR  F+QI ++AMHQNGRDTHIRQVKV+ PR  +V  D ++ E  +P+F  ++CIR
Sbjct:   11 RREVGDDAVWSLSSAKPGNGVDQLRDNSVDTYWQSDGVQPHLVNIQFSRKMAVKEVALYLDYKLDESYTPKKVAIRSGSTVHDLKEIHVQHIAEPSGWISIPLSSD---------------EEQVPLRTFFLQIVILAMHQNGRDTHIRQVKVYAPRETNVL-DWTIPEATTPQFAAYSCIR 176
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BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Match: K3WX17_GLOUD (Anaphase-promoting complex subunit 10 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX17_GLOUD)

HSP 1 Score: 204 bits (518), Expect = 6.360e-63
Identity = 103/182 (56.59%), Postives = 129/182 (70.88%), Query Frame = 1 
Query:   85 RREIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGAEGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFISPEFETFACIR 630
            RRE+G +AVWSLS+AKPGNGVDQLRD++ DTYWQSDG QPHLIN+QFHKKM + EIA +LD+  DESYTPKK+SIR GS+ HDL E+  + L EP GWV +PL              A+   +   L+  F+QI ++AMHQNGRDTHIRQVK++ PR  +   D SL E  + +F  F+CIR
Sbjct:    7 RREVGDDAVWSLSTAKPGNGVDQLRDNNVDTYWQSDGSQPHLINVQFHKKMALKEIALYLDYKLDESYTPKKISIRCGSTVHDLKEIYAQSLAEPNGWVTIPL-------------TASDDDDETPLQTFFLQIAIIAMHQNGRDTHIRQVKIYAPREPNAL-DRSLPEPSTEQFWAFSCIR 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6920.17913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV7_ECTSI7.150e-14699.52Anaphase-promoting complex subunit 10 n=2 Tax=Ecto... [more]
W7U0V1_9STRA1.810e-6855.56Anaphase-promoting complex, subunit 10/DOC domain ... [more]
F0XYN0_AURAN8.640e-6861.45Anaphase-promoting complex subunit 10 n=1 Tax=Aure... [more]
A0A7S3AMX8_9EUKA2.810e-6560.11Anaphase-promoting complex subunit 10 n=1 Tax=Hapt... [more]
A0A485KIW7_9STRA1.420e-6459.89Anaphase-promoting complex subunit 10 n=1 Tax=Apha... [more]
A0A7S0RL68_9CHLO1.560e-6453.72Anaphase-promoting complex subunit 10 n=1 Tax=Pyra... [more]
A0A8K1FCQ9_PYTOL7.350e-6458.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GWS0_PHYRM2.630e-6355.49Anaphase-promoting complex subunit 10 n=1 Tax=Phyt... [more]
A0A6A4EML9_9STRA3.380e-6356.04Anaphase-promoting complex subunit 10 n=3 Tax=Phyt... [more]
K3WX17_GLOUD6.360e-6356.59Anaphase-promoting complex subunit 10 n=1 Tax=Glob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6920contigEcto-sp13_S_contig6920:5828..7880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score417.9
Seed ortholog evalue2.8e-114
Seed eggNOG ortholog2880.D7FYV7
Preferred nameANAPC10
Model size774
KEGG rclassRC00090,RC00166,RC01100
KEGG koko:K03357,ko:K11788
KEGG ReactionR04144,R04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00230,map01100,map01110,map01130,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00048,M00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005739,GO:0005829,GO:0006275,GO:0006323,GO:0006325,GO:0006333,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007113,GO:0008150,GO:0008152,GO:0008156,GO:0008283,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010087,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010948,GO:0016043,GO:0016567,GO:0016604,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031145,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0036211,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045786,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070979,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090329,GO:0098772,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:1990234,GO:2000104,GO:2000112,GO:2000113,GO:2000736
Exons5
EggNOG free text desc.anaphase-promoting complex-dependent catabolic process
EggNOG OGsCOG5156@1,KOG3437@2759
Ec32 ortholog descriptionPutative subunit of the Anaphase Promoting Complex
Ec32 orthologEc-19_002640.1
EC6.3.3.1,6.3.4.13
Cds size633
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6920.17913.1prot_Ecto-sp13_S_contig6920.17913.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6920 5828..7739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463951.0204246-CDS-Ecto-sp13_S_contig6920:5827..60171681463951.0204246-CDS-Ecto-sp13_S_contig6920:5827..6017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 5828..6017 +
1681463951.0368946-CDS-Ecto-sp13_S_contig6920:6326..64181681463951.0368946-CDS-Ecto-sp13_S_contig6920:6326..6418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 6327..6418 +
1681463951.047887-CDS-Ecto-sp13_S_contig6920:6741..68071681463951.047887-CDS-Ecto-sp13_S_contig6920:6741..6807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 6742..6807 +
1681463951.0586874-CDS-Ecto-sp13_S_contig6920:7201..73871681463951.0586874-CDS-Ecto-sp13_S_contig6920:7201..7387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 7202..7387 +
1681463951.070104-CDS-Ecto-sp13_S_contig6920:7640..77391681463951.070104-CDS-Ecto-sp13_S_contig6920:7640..7739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6920 7641..7739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463951.0808434-UTR-Ecto-sp13_S_contig6920:7739..78801681463951.0808434-UTR-Ecto-sp13_S_contig6920:7739..7880Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6920 7740..7880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6920.17913.1

>prot_Ecto-sp13_S_contig6920.17913.1 ID=prot_Ecto-sp13_S_contig6920.17913.1|Name=mRNA_Ecto-sp13_S_contig6920.17913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
MADDSQVSQQPAQPPEAKTEASELDYVTRREIGREAVWSLSSAKPGNGVD
QLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKK
LSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAVAIAADAAGGA
EGPVLRAHFVQICVVAMHQNGRDTHIRQVKVFGPRLASVQHDPSLLEFIS
PEFETFACIR*
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mRNA from alignment at Ecto-sp13_S_contig6920:5828..7880+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6920.17913.1 ID=mRNA_Ecto-sp13_S_contig6920.17913.1|Name=mRNA_Ecto-sp13_S_contig6920.17913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6920:5828..7880+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGATGATAGCCAGGTATCGCAGCAGCCTGCTCAACCTCCGGAGGC
AAAGACCGAGGCATCCGAGCTGGACTACGTGACGCGAAGAGAGATCGGAA
GGGAGGCCGTGTGGTCTCTTTCCTCGGCCAAGCCCGGCAACGGCGTTGAC
CAGCTCAGGGACGACTCAACCGACACCTATTGGCAATCAGGTAGGTGTGC
GATTCTCGGCTTTCACAGCAGAGAAACTTTGAGTAAGATGTTGAACCCAG
GGCGTGTGCATGTTCACGCTTGTTCTCGGAAACAGTCCACGCGGCTGATT
TGGCGCCAAGGGCACCACGGTTGAGTTAATCCGGCGTCAACCCGTAAGCG
TAGAAGCCGAAGCAGGAGTCGCAGGGTAGTAGTGGAAATATGCGTGTACA
CACGCTACGCCTGTTGAGTTTCTATTTTCTGTGCTTTACCTTGGATGGAG
TTGTGTGACTAGCAGGCTTGCACTCTTTCTCTCTTTCTCGCCGCCGCAGA
TGGTGGCCAGCCTCACCTGATCAACATCCAGTTCCACAAGAAGATGACCG
TGGTAGAGATAGCGTTTCATCTTGACTTTAGTTCAGACGAGGTGAGACAT
GAAGAAAACAGTTCGATGGGCTGCTGTTGCTCTTGCTTGTGGGCGCCAAC
GCTGTTCTTATGCACAAAGTGTGAGCGTAGTGAATCCTGCCAACGGTAGC
ACTACCCTCTGGATCCCGTATTGATCAGAGTTAACAATTACCTCTACTGA
TTCACAATATGGGAAGGTGCTGTACAACACTTACGACTGACATCCCCCAT
TTGCATGATATGAGCAGTTTCGTCAGGTCCAGACTACTGCTGTATTGCTT
TGGTGAACATCACCTAATGACGGGCCCATCTGCTTGTGCACTCCGCATCT
CTTACCGAATGCAGAGTTACACGCCGAAAAAGCTCTCGATCCGGGCAGGC
AGCAGCTTTCACGATCTTGTCGAAGTGACGGTGAGTGAAGCGCTTCCTTT
GGCCAATGCATTGTAGCCATGCTGCAGTTATCAAGTTGTTCAAGGCTGGG
TTGGTCACCAGCAGGTGGACAACGTACCCCCATCGGCCGTTGTGACCGGT
TTGTCGCGGTGCTACAGTAGGGACGCCCTCTCCAGGCTTGGCGTGATAGA
CGGCTTTACATCCGCAATGACTACGATCGAGACGTCTGATACCCGCATGT
GCAGCAAGGGTACCCTAGGCTAGCAAGGAACAGCGCCGCTCCTCAGAAGT
TAGTGCCTTCCTCTGTTCCCATTCACTATATTGTGTGGACGTTGGGACCC
CATATTTCTCCGTTTTTGTCCCTCCCGCCCTCCGCCCCGCCCACCGTTCG
TCGATTGCCGCATACCCCCCCCAGGTCAAGGAACTACACGAACCCGTTGG
GTGGGTGAGAGTACCGCTGTTTGCGCCAGGGGGCGGCGGGGCGGTGGCAA
TCGCGGCGGATGCTGCCGGTGGTGCGGAGGGCCCGGTCCTGCGCGCGCAC
TTCGTGCAGATTTGCGTGGTAGCCATGCACCAAAACGGCAGAGATACACA
CATCAGACAGGTGAAGGAAGAGCCTAGATAGCGGACTTGGATTGAGGGAA
CGAAGGGTGATCGGAAAACCGCAACCTGACGGCTTTCGTAACCTGATCGG
TGAAATGTGCAGAAATGCTGCAAGTGTCGTGAATACACCAGGCAATACCC
GTTCGCATCCTCTGCTCTAGCATCCCCCGAACTCTTCTCAATAGGAAGGT
GACCTTTGCGTGTGCCTTCATCTGACTAATGGCGTGCTGCGTTGTCTCCC
GCCATGTGTGCAGGTGAAGGTTTTTGGCCCGCGGTTGGCGTCCGTGCAGC
ACGACCCGTCTCTGTTAGAGTTCATATCCCCGGAGTTTGAGACGTTTGCA
TGCATCCGATAGCCCGGAGCCCCGATAAGGAAGGGTGCCCTCGAAGGATG
TGCAATAGTGACGATAGAAAGATCGATAGAGGGAGAAAGAGGGCATGGTG
CCTCCGTTTTACAATCTGAAGGTGGCGCGATGGAGAAAGGGGAAAGTAGG
GTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6920:5828..7880+

>mRNA_Ecto-sp13_S_contig6920.17913.1 ID=mRNA_Ecto-sp13_S_contig6920.17913.1|Name=mRNA_Ecto-sp13_S_contig6920.17913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6920:5828..7880+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGATGATAGCCAGGTATCGCAGCAGCCTGCTCAACCTCCGGAGGC
AAAGACCGAGGCATCCGAGCTGGACTACGTGACGCGAAGAGAGATCGGAA
GGGAGGCCGTGTGGTCTCTTTCCTCGGCCAAGCCCGGCAACGGCGTTGAC
CAGCTCAGGGACGACTCAACCGACACCTATTGGCAATCAGATGGTGGCCA
GCCTCACCTGATCAACATCCAGTTCCACAAGAAGATGACCGTGGTAGAGA
TAGCGTTTCATCTTGACTTTAGTTCAGACGAGAGTTACACGCCGAAAAAG
CTCTCGATCCGGGCAGGCAGCAGCTTTCACGATCTTGTCGAAGTGACGGT
CAAGGAACTACACGAACCCGTTGGGTGGGTGAGAGTACCGCTGTTTGCGC
CAGGGGGCGGCGGGGCGGTGGCAATCGCGGCGGATGCTGCCGGTGGTGCG
GAGGGCCCGGTCCTGCGCGCGCACTTCGTGCAGATTTGCGTGGTAGCCAT
GCACCAAAACGGCAGAGATACACACATCAGACAGGTGAAGGTTTTTGGCC
CGCGGTTGGCGTCCGTGCAGCACGACCCGTCTCTGTTAGAGTTCATATCC
CCGGAGTTTGAGACGTTTGCATGCATCCGATAG
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