mRNA_Ecto-sp13_S_contig6914.17903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6914.17903.1
Unique NamemRNA_Ecto-sp13_S_contig6914.17903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: D7FPV5_ECTSI (TOG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV5_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.570e-46
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:    1 YPRNLGAS---TAICGQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            YP+ LG +    A   QVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV
Sbjct:   28 YPQELGLAWEAPARVSQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 124
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A835ZFJ3_9STRA (TOG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 7.510e-37
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 YPRNLGAS---TAICGQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            YP+ LG +   T    QVQILSHQSKIATQIELF+G G  YE+A +RRLGYLSLNSNERSKY ARELKSVY++A G +LR++VH+CYINE+NLFNQV
Sbjct:  148 YPQELGVALEGTCRLAQVQILSHQSKIATQIELFIGRGSDYEAAQWRRLGYLSLNSNERSKYMARELKSVYIDATGDFLRLMVHRCYINELNLFNQV 244
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A7S2SU90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU90_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.710e-30
Identity = 53/81 (65.43%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:   40 QVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            QVQ+LSHQSKIAT+IEL+VG G SY +A+++RLGYLSL  N +S YQARELKSVY++  G +L++LVHKCY+N  N++NQV
Sbjct:   57 QVQLLSHQSKIATKIELYVGEGGSYSTANWKRLGYLSLADNSQSDYQARELKSVYIDCTGAFLKLLVHKCYLNTHNIYNQV 137
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: K8Z1Q2_NANGC (UVR domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z1Q2_NANGC)

HSP 1 Score: 117 bits (293), Expect = 2.270e-30
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 YPRNLGA----STAICGQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            YP+ LG     +     +VQILSHQSKIAT++ELFVG G +Y  A F RLGYLSLNSN+RS ++ARELKSV+V+  G++L++++H+C++N+ NLFNQV
Sbjct:   41 YPQELGLFLLDTPCHLSRVQILSHQSKIATKVELFVGDGGNYAEAAFARLGYLSLNSNQRSNFRARELKSVFVSCSGRFLKLVIHRCHVNKFNLFNQV 138
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A7S1U5S9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5S9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.770e-30
Identity = 50/81 (61.73%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:   40 QVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            Q+++LSHQSKIA+++E+FVG G  Y SA F RLGY+SL++NERS+YQARELK+VY+N   +++R+LVH+C++N+ NLFNQV
Sbjct:   60 QMKLLSHQSKIASRVEIFVGDGPDYHSAAFNRLGYMSLDANERSRYQARELKTVYLNLSARFVRLLVHQCHLNKYNLFNQV 140
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A2R5GHB4_9STRA (Centrosomal protein of 104 kDa n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHB4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.480e-29
Identity = 55/98 (56.12%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 YPRNLGASTAI----CGQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            YP+ +G    +      Q+QILSHQSKIAT+I+++VG G+SYES +FRRLG+LSL+SNERS + ARELKSVY+   G +L++L+HKC++N +N++NQV
Sbjct:   85 YPQEIGLGFLVGEVDLAQLQILSHQSKIATKIDVYVGRGNSYESCNFRRLGHLSLDSNERSNFAARELKSVYIGKQGSFLKLLIHKCHLNSLNIYNQV 182
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A4D9CPN0_9STRA (UVR domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPN0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.150e-29
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 YPRNLGA----STAICGQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            YP+ LG     +     +VQILSHQSKIAT++ELFVG G SY  A F RLGYLSLNSN+RS ++ARELKSV+V+  G++L++++H+C++N+ NLFNQV
Sbjct:   41 YPQELGLLLHDTPCHLSRVQILSHQSKIATKVELFVGDGGSYAEAAFARLGYLSLNSNQRSNFRARELKSVFVSCSGRFLKLVIHRCHVNKFNLFNQV 138
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A5A8C7I5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7I5_CAFRO)

HSP 1 Score: 112 bits (279), Expect = 2.430e-28
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:   40 QVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            Q+QILSHQSKIAT+IELFVG G  Y SA +RRLGYLSL+SNERS ++ARELKSVYV+A G +L+MLVHK + N  NL NQV
Sbjct:   64 QLQILSHQSKIATRIELFVGRGSDYFSADWRRLGYLSLDSNERSGFKARELKSVYVDAKGHFLKMLVHKPHQNGRNLLNQV 144
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A7S1CBN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBN9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.620e-28
Identity = 51/81 (62.96%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:   40 QVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            Q+Q+LSHQ K+AT++ELF+G GD+Y  A F+RLGYL+L+SNERS Y+ARELKSVYV+A   +LR++VHK + N  NL+NQV
Sbjct:   71 QLQLLSHQFKVATKVELFLGKGDAYRHASFKRLGYLTLDSNERSGYRARELKSVYVDAEASFLRLVVHKPHTNAHNLYNQV 151
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BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Match: A0A482S043_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S043_9ARCH)

HSP 1 Score: 110 bits (275), Expect = 4.960e-28
Identity = 53/99 (53.54%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:    1 YPRNLG-----ASTAICGQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLSLNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV 282
            YP+ LG       T +  Q+QILSHQSKI++++E++VG G +Y++A F+RLGYLSL+SNERS YQARELK+V+V+  G +L++LV + ++N+VN++NQV
Sbjct:   19 YPQELGFEFLDGETRVT-QIQILSHQSKISSKVEIYVGKGSNYDNAQFKRLGYLSLDSNERSNYQARELKTVFVDCVGSFLKLLVFENHVNKVNMYNQV 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6914.17903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV5_ECTSI1.570e-4688.66TOG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZFJ3_9STRA7.510e-3771.13TOG domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2SU90_9STRA1.710e-3065.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K8Z1Q2_NANGC2.270e-3057.14UVR domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S1U5S9_9STRA3.770e-3061.73Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A2R5GHB4_9STRA1.480e-2956.12Centrosomal protein of 104 kDa n=1 Tax=Hondaea fer... [more]
A0A4D9CPN0_9STRA5.150e-2958.16UVR domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A5A8C7I5_CAFRO2.430e-2871.60Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S1CBN9_9STRA4.620e-2862.96Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482S043_9ARCH4.960e-2853.54Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6914contigEcto-sp13_S_contig6914:7606..7887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score168.3
Seed ortholog evalue1.7e-39
Seed eggNOG ortholog2880.D7FPV5
Model size282
KEGG koko:K16458
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.thienylcyclohexylpiperidine binding
EggNOG OGsKOG4825@1,KOG4825@2759
Cds size282
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463950.0968888-CDS-Ecto-sp13_S_contig6914:7605..78871681463950.0968888-CDS-Ecto-sp13_S_contig6914:7605..7887Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6914 7606..7887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6914.17903.1prot_Ecto-sp13_S_contig6914.17903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6914 7606..7887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6914.17903.1

>prot_Ecto-sp13_S_contig6914.17903.1 ID=prot_Ecto-sp13_S_contig6914.17903.1|Name=mRNA_Ecto-sp13_S_contig6914.17903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
YPRNLGASTAICGQVQILSHQSKIATQIELFVGHGDSYESAHFRRLGYLS
LNSNERSKYQARELKSVYVNAPGQYLRMLVHKCYINEVNLFNQV
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mRNA from alignment at Ecto-sp13_S_contig6914:7606..7887+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6914.17903.1 ID=mRNA_Ecto-sp13_S_contig6914.17903.1|Name=mRNA_Ecto-sp13_S_contig6914.17903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6914:7606..7887+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATCCTCGCAACCTCGGCGCTTCCACCGCAATTTGCGGACAGGTGCAAAT
CCTGTCGCATCAGAGTAAAATCGCCACCCAAATCGAGCTCTTCGTAGGGC
ATGGGGATTCGTACGAGTCGGCGCACTTCAGGCGGCTTGGGTATCTCAGT
CTTAATAGCAACGAGCGGTCCAAGTACCAAGCACGGGAGCTCAAGAGCGT
TTACGTCAATGCTCCGGGACAGTACTTGCGAATGCTTGTGCATAAGTGCT
ACATCAACGAGGTCAACCTTTTCAACCAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6914:7606..7887+

>mRNA_Ecto-sp13_S_contig6914.17903.1 ID=mRNA_Ecto-sp13_S_contig6914.17903.1|Name=mRNA_Ecto-sp13_S_contig6914.17903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6914:7606..7887+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATCCTCGCAACCTCGGCGCTTCCACCGCAATTTGCGGACAGGTGCAAAT
CCTGTCGCATCAGAGTAAAATCGCCACCCAAATCGAGCTCTTCGTAGGGC
ATGGGGATTCGTACGAGTCGGCGCACTTCAGGCGGCTTGGGTATCTCAGT
CTTAATAGCAACGAGCGGTCCAAGTACCAAGCACGGGAGCTCAAGAGCGT
TTACGTCAATGCTCCGGGACAGTACTTGCGAATGCTTGTGCATAAGTGCT
ACATCAACGAGGTCAACCTTTTCAACCAGGTA
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