mRNA_Ecto-sp13_S_contig69031.17890.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: A0A6H5K0B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B6_9PHAE) HSP 1 Score: 134 bits (337), Expect = 4.860e-35 Identity = 67/72 (93.06%), Postives = 67/72 (93.06%), Query Frame = 1
Query: 16 ALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQVTRADI 231
ALS HPADGSPQI RMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALC SNRYQVTR I
Sbjct: 152 ALSGHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCGSNRYQVTREAI 223
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: D8LIA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA8_ECTSI) HSP 1 Score: 134 bits (337), Expect = 7.190e-35 Identity = 67/72 (93.06%), Postives = 67/72 (93.06%), Query Frame = 1
Query: 16 ALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQVTRADI 231
ALS HPADGSPQI RMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALC SNRYQVTR I
Sbjct: 355 ALSGHPADGSPQIKRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCGSNRYQVTREAI 426
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: A0A0P1ADX8_PLAHL (Low quality protein: nitrogen permease regulator 3-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADX8_PLAHL) HSP 1 Score: 66.6 bits (161), Expect = 4.570e-11 Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 TNHQSALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADI 231
T+ S LS+ P D + Q+ ++E +P K+ +++A+ +++ + Q+ RLA HLV+WG GR++DAL N YQV +AD+
Sbjct: 346 TDKNSILSKLPIDHARQLRLLVETVNPLKSFQDIAHDTDMPIHQIFRLAAHLVYWGYGRIVDALTLYNIYQVHAKADL 423
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: H3HC47_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HC47_PHYRM) HSP 1 Score: 63.5 bits (153), Expect = 5.520e-10 Identity = 30/74 (40.54%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 13 SALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQVT-RADI 231
S L++ PAD + Q+ ++E +P K+ ++LA + + + Q+ RLA HLV+WG GR++DA+ N YQV +AD+
Sbjct: 343 SILNKLPADHARQLRDLVEAVNPLKSFQDLALETGVPIHQVFRLAAHLVYWGFGRIVDAITLYNIYQVNAKADL 416
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: A0A3M6VKD0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKD0_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.040e-9 Identity = 28/78 (35.90%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 TNHQSALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADI 231
++ + L++ PAD + Q+ ++E +P K+ +++A + + + Q+ RL+ HLV+WG GR++DA+ N YQV T+AD+
Sbjct: 358 SDKSNILNKLPADHARQLRDLVEAVNPLKSFQDIALETGVPIHQVFRLSAHLVYWGFGRIVDAITLYNIYQVNTKADL 435
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: A0A6A4CTC0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4CTC0_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.430e-9 Identity = 29/78 (37.18%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 1 TNHQSALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADI 231
T L++ PAD + Q+ ++E +P K+ ++L + + + Q+ RLA HLV+WG GR++DA+ N YQV ++AD+
Sbjct: 554 TGKDDILNKLPADHARQLRDLVEAVNPLKSFQDLVLEAGVPIHQVFRLAAHLVYWGFGRIVDAITLYNIYQVNSKADL 631
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: A0A2P4XQE6_9STRA (UPF0171 like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQE6_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.910e-9 Identity = 28/72 (38.89%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 19 LSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV-TRADI 231
L++ PAD + Q+ ++E +P K+ +++A + + + Q+ RLA HLV+WG GR++DA+ N YQV ++AD+
Sbjct: 366 LNKLPADHARQLRDLVETVNPLKSFQDIALEAGVPIHQVFRLAAHLVYWGFGRIVDAITLYNIYQVNSKADL 437
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: UPI0014256D99 (GATOR complex protein NPRL3-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256D99) HSP 1 Score: 62.0 bits (149), Expect = 1.930e-9 Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 13 SALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRY 210
S + P D SP + R+I++A P K+L++L+ S+I LSQ+ +L HLV+WG VI LC +N Y
Sbjct: 280 SLIMSLPPDCSPSLVRIIKLATPIKSLQQLSQDSDIALSQVFQLVGHLVYWGKATVIFPLCETNIY 345
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: A0A183IBL1_9BILA (GATOR complex protein NPRL3 n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IBL1_9BILA) HSP 1 Score: 60.8 bits (146), Expect = 4.850e-9 Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 19 LSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV 216
+S P D SP + R+I++ +P K+L+ LAY +++ L Q+ RL +HLV WG V LC +N Y V
Sbjct: 193 ISALPLDTSPALLRLIDVYNPLKSLQTLAYDADVALKQVFRLVQHLVCWGKAMVTYPLCETNVYCV 258
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Match: M4BTZ0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTZ0_HYAAE) HSP 1 Score: 60.8 bits (146), Expect = 4.950e-9 Identity = 25/72 (34.72%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1 TNHQSALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARHLVFWGSGRVIDALCSSNRYQV 216
++ + L++ PAD + Q+ ++E +P K+ +++A + + + Q+ RL+ HLV+WG GR++DA+ N YQV
Sbjct: 364 SDKSAILNKLPADHARQLRDLVEAVNPLKSFQDIALETSVPIHQVFRLSAHLVYWGYGRIVDAITLYNIYQV 435 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69031.17890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig69031.17890.1 >prot_Ecto-sp13_S_contig69031.17890.1 ID=prot_Ecto-sp13_S_contig69031.17890.1|Name=mRNA_Ecto-sp13_S_contig69031.17890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp TNHQSALSEHPADGSPQITRMIEIADPHKTLEELAYTSEIELSQMLRLARback to top mRNA from alignment at Ecto-sp13_S_contig69031:174..685- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig69031.17890.1 ID=mRNA_Ecto-sp13_S_contig69031.17890.1|Name=mRNA_Ecto-sp13_S_contig69031.17890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69031:174..685- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69031:174..685- >mRNA_Ecto-sp13_S_contig69031.17890.1 ID=mRNA_Ecto-sp13_S_contig69031.17890.1|Name=mRNA_Ecto-sp13_S_contig69031.17890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69031:174..685- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |