mRNA_Ecto-sp13_S_contig69022.17888.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69022.17888.1
Unique NamemRNA_Ecto-sp13_S_contig69022.17888.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69022.17888.1 vs. uniprot
Match: D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.910e-58
Identity = 116/143 (81.12%), Postives = 119/143 (83.22%), Query Frame = 1 
Query:    1 MHVASPGLPEAALRHLFFQAATTGASLPSSLSAARAGGDGGGQTTAPAITTTSPLTRQRTSYNRNNAGRSGSFRQSDKSGRGGGGDGETTSASGLARAIVGFPLACEGLAPLVASTATELSARSLLKQVAYQAKEALEDAEKV 429
            MHVASPGLPEAALRHLFFQAATTGA  PSSL AARAGGDG GQTTAPA          RTS NR+NAGRSGSFRQS KS      DGETTSASGLARAI GFPLACEGLAPLVASTATELSARSLLKQVA+QAKEALE+ EKV
Sbjct:    1 MHVASPGLPEAALRHLFFQAATTGAPRPSSLPAARAGGDGRGQTTAPATXXXXXXXXXRTSNNRSNAGRSGSFRQSGKSDGXXXXDGETTSASGLARAIAGFPLACEGLAPLVASTATELSARSLLKQVAHQAKEALEETEKV 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69022.17888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR5_ECTSI2.910e-5881.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69022contigEcto-sp13_S_contig69022:101..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size429
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004270.1
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463948.7816525-CDS-Ecto-sp13_S_contig69022:100..5291681463948.7816525-CDS-Ecto-sp13_S_contig69022:100..529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69022 101..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69022.17888.1prot_Ecto-sp13_S_contig69022.17888.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69022 101..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69022.17888.1

>prot_Ecto-sp13_S_contig69022.17888.1 ID=prot_Ecto-sp13_S_contig69022.17888.1|Name=mRNA_Ecto-sp13_S_contig69022.17888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MHVASPGLPEAALRHLFFQAATTGASLPSSLSAARAGGDGGGQTTAPAIT
TTSPLTRQRTSYNRNNAGRSGSFRQSDKSGRGGGGDGETTSASGLARAIV
GFPLACEGLAPLVASTATELSARSLLKQVAYQAKEALEDAEKV
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mRNA from alignment at Ecto-sp13_S_contig69022:101..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69022.17888.1 ID=mRNA_Ecto-sp13_S_contig69022.17888.1|Name=mRNA_Ecto-sp13_S_contig69022.17888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69022:101..529- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGTTGCAAGCCCGGGGCTCCCCGAAGCGGCGCTCCGCCACCTCTT
CTTCCAAGCGGCCACAACAGGCGCGTCATTGCCATCCTCCTTATCGGCTG
CTCGGGCGGGAGGAGACGGAGGGGGGCAAACCACGGCTCCCGCCATAACT
ACCACCTCCCCCCTCACGCGACAGCGCACAAGCTACAATCGCAACAACGC
TGGTAGAAGTGGAAGTTTCCGCCAGAGTGATAAGAGCGGCCGTGGTGGCG
GTGGAGACGGGGAAACCACATCCGCGTCCGGTCTGGCGCGAGCCATCGTG
GGCTTTCCTCTGGCGTGCGAGGGGCTGGCGCCCTTGGTCGCGTCCACGGC
CACGGAGCTCAGCGCGCGGAGCCTGCTCAAGCAGGTCGCGTATCAGGCCA
AGGAGGCCCTCGAAGACGCCGAGAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69022:101..529-

>mRNA_Ecto-sp13_S_contig69022.17888.1 ID=mRNA_Ecto-sp13_S_contig69022.17888.1|Name=mRNA_Ecto-sp13_S_contig69022.17888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69022:101..529- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGTTGCAAGCCCGGGGCTCCCCGAAGCGGCGCTCCGCCACCTCTT
CTTCCAAGCGGCCACAACAGGCGCGTCATTGCCATCCTCCTTATCGGCTG
CTCGGGCGGGAGGAGACGGAGGGGGGCAAACCACGGCTCCCGCCATAACT
ACCACCTCCCCCCTCACGCGACAGCGCACAAGCTACAATCGCAACAACGC
TGGTAGAAGTGGAAGTTTCCGCCAGAGTGATAAGAGCGGCCGTGGTGGCG
GTGGAGACGGGGAAACCACATCCGCGTCCGGTCTGGCGCGAGCCATCGTG
GGCTTTCCTCTGGCGTGCGAGGGGCTGGCGCCCTTGGTCGCGTCCACGGC
CACGGAGCTCAGCGCGCGGAGCCTGCTCAAGCAGGTCGCGTATCAGGCCA
AGGAGGCCCTCGAAGACGCCGAGAAGGTG
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