mRNA_Ecto-sp13_S_contig68874.17859.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68874.17859.1
Unique NamemRNA_Ecto-sp13_S_contig68874.17859.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: D7FP60_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP60_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.540e-16
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQVR 132
            AYSSV+RW  G ++FTKKFV +PVV D+HWSL+C CNLD++Q R
Sbjct:   19 AYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTR 62
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: D7FI86_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI86_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.580e-15
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQ 126
            AYSSV+RW  G ++FTKKFV +PVV D+HWSL+C CNLD++Q
Sbjct:   19 AYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQ 60
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.080e-14
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQV 129
            AYS V+ W+R  DLF KKFV +PVV DMHWSLAC CNLDK++V
Sbjct:  423 AYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLEV 465
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-13
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQV 129
            AYS V+ W+R  DLF KKFV +PVV D+HWSLAC CNLDK++V
Sbjct:  725 AYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLEV 767
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: D7FWD8_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD8_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.530e-11
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQVR 132
            AY  V+RWSR  DLF+ KFV +PVV D HW LAC CNL+K++ +
Sbjct:  261 AYGGVKRWSRHVDLFSMKFVMVPVVEDEHWRLACLCNLNKLEAK 304
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.690e-9
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQVRSV 138
            A++ VERW+RG D+F KKF+ +PVV D+HWSLA  C+  ++  R+V
Sbjct:  130 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAV 175
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: A0A7S4A0P2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.760e-9
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQVRSV 138
            A++ VERW+RG D+F KKF+ +PVV D+HWSLA  C+  ++  R+V
Sbjct:  162 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAV 207
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: A0A8J2SX84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX84_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.820e-9
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQVRSV 138
            A++ VERW+RG D+F KKF+ +PVV D+HWSLA  C+  ++  R+V
Sbjct:  321 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAV 366
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: A0A7S4A074_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A074_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-8
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 VERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQVRSV 138
            VERW+RG D+F KKF+ +PVV D+HWSLA  C+  ++  R++
Sbjct:  319 VERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRAI 360
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BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Match: F0YQ64_AURAN (ULP_PROTEASE domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ64_AURAN)

HSP 1 Score: 55.1 bits (131), Expect = 2.260e-7
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCN 111
            AY  VERW+RG D+F+KKF+ +P+V  +HWSLA  C+
Sbjct:  331 AYDRVERWTRGVDVFSKKFLVVPIVEHLHWSLAIVCH 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68874.17859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP60_ECTSI4.540e-1665.91SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D7FI86_ECTSI4.580e-1566.67SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D8LDN6_ECTSI5.080e-1469.77ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE1.300e-1367.44ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FWD8_ECTSI3.530e-1159.09SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
A0A7S3ZZX5_9STRA2.690e-952.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0P2_9STRA2.760e-952.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SX84_9STRA2.820e-952.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A074_9STRA2.520e-852.38Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YQ64_AURAN2.260e-756.76ULP_PROTEASE domain-containing protein n=2 Tax=Aur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68874contigEcto-sp13_S_contig68874:385..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.6
Seed ortholog evalue3.4e-11
Seed eggNOG ortholog2880.D8LDN6
Model size168
KEGG koko:K08596
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons1
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
Cds size168
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463945.9566505-CDS-Ecto-sp13_S_contig68874:384..5521681463945.9566505-CDS-Ecto-sp13_S_contig68874:384..552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68874 385..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68874.17859.1prot_Ecto-sp13_S_contig68874.17859.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68874 385..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68874.17859.1

>prot_Ecto-sp13_S_contig68874.17859.1 ID=prot_Ecto-sp13_S_contig68874.17859.1|Name=mRNA_Ecto-sp13_S_contig68874.17859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
AYSSVERWSRGEDLFTKKFVFIPVVNDMHWSLACFCNLDKIQVRSVYTAV
CNLFMP
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mRNA from alignment at Ecto-sp13_S_contig68874:385..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68874.17859.1 ID=mRNA_Ecto-sp13_S_contig68874.17859.1|Name=mRNA_Ecto-sp13_S_contig68874.17859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68874:385..552+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTACAGCAGCGTGGAGCGCTGGTCTAGGGGAGAGGATCTCTTCACGAA
GAAGTTCGTCTTCATACCGGTGGTAAACGACATGCACTGGAGCCTCGCAT
GCTTCTGCAACCTCGACAAAATCCAGGTACGATCCGTCTATACCGCGGTA
TGTAATCTCTTCATGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68874:385..552+

>mRNA_Ecto-sp13_S_contig68874.17859.1 ID=mRNA_Ecto-sp13_S_contig68874.17859.1|Name=mRNA_Ecto-sp13_S_contig68874.17859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68874:385..552+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTACAGCAGCGTGGAGCGCTGGTCTAGGGGAGAGGATCTCTTCACGAA
GAAGTTCGTCTTCATACCGGTGGTAAACGACATGCACTGGAGCCTCGCAT
GCTTCTGCAACCTCGACAAAATCCAGGTACGATCCGTCTATACCGCGGTA
TGTAATCTCTTCATGCCG
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