mRNA_Ecto-sp13_S_contig688.17852.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig688.17852.1 vs. uniprot
Match: D8LMJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ2_ECTSI) HSP 1 Score: 1834 bits (4751), Expect = 0.000e+0 Identity = 1022/1263 (80.92%), Postives = 1048/1263 (82.98%), Query Frame = 1
Query: 1 RCASDLTDYIASDPSVSNFLGTLFGLLARGGAKNMHQRVMGTFANLAYLCVAGGASTEWAGHLRESLKQFLLHFTETADVLGNFNLDPLEAQDRQLKFQGVRFEIARFLWCMIRLDLCHGSSVDRLAAYISELDVLGASAGVLYENVPRTCLKHHEVCIATPSERYASDGSGGEGGNGYDTAVANEHSGHSSGGQERAVDASEQMRADTVRTFALWILAHYTGRSDDRVHVASHGGLTVLTSILMGPTGLVEAAKAGGASGDKPASKQSFINLKLAAKALANLCQAPQNAELVERAGALAAIKALYAYISDNNDIVGNASASTQPSTSSAYGRAQMNCVPARYKIDPDFRKAYLVIQENLWRPVVKDPVVHDDGSVTVHYEVPAGNNECFELSKRLTPLMVERKELQICQGEVPHQINVFAEVAACLSALAMHSSVLKLFAPSGVLGPFLELSLEQLVPRETCLTALLDTPVKAYSQHAQVMRHLWSLIASTVLDSETDAPESEGDDTEGNFGEDAVVQEGDSTDVSGEGAGDSTVEPKAERRRQSDAETASWSSRIVQKKLEQALAVRVLDRLVAGADEDAFEPTESSSTRGDDSWGSDKIGEQDSQQPGGGKGLSIDGGAKSKRRRSSAASAPLSMLDVGRRTSAEFRRQSLLMTSGRAYTVSGILSQQVLLSGIIVLASPTDESKDNWRRVLPSSLAAPVLSAQRRLEYFCIGLAGSVSDAVRRNWLALDGKRTNARNAMKALMELCVDHMAVLVNKAELASFQNRTDSQTAATPEPPELSSLATQRHSNNSAEEKWPRARHQRESLTDPPEKPDSKSAPKRGLRLSINPDVGKCRRDENGGGVGGGGFDGNMGAAGVSGDDRRHGRDQSALFRQESSFDSAGAISALSGMSGLGVGGGAETRGGIEAFLLPEEEQVVQMLFRAILSLLSVEEECTTAGDPRFGDGSENPRRQQSRTVGKNRWGSFRGREGQSRFGVEAAGDSADGAEGRGDDTTRPSAGAAGRLDDILRLCCRLLRCGPGDGVLHVSLLAIGKILSISSRRKVNASELEGVVPAVASFLERPSLWVKHACLTLLHRMASRNDLGGVVGLARGSKSRQVIACLSNADTGTRLAAANLVGVLAKDAFYSKSIVFPEAGTPNISAVGGEAEPALTLETLIVMSIDLHVDSHPQASLDMDGDFDVHQRSEHGCIPPLLAMVRSGVCNTERGAASMEQEVALCVLQDLASANNLCREAIVSHGGVPVLLQAPENYSARARRAVA 3789
RCASDLTDYIASDPSVSNFLGTLFGLLARG AKNMHQRVMGTFANLAYLCVAGGASTEWAGHLRESLKQFLLHFTET+DVLGNFNLDPLEAQDRQLKFQGVRFE+ VD L CIATPSERYASDGSGGEGG+GYDTAVA+EHSG S GGQERAVDASEQMRADTVRTFALWILAHYTGRSDDRVHVASHGGLTVLTSILMGPTGLVEAAKAGGASG KPASKQSFINLKLAAKALANLCQAPQNAELVE AGALAAIKALYAYISDNNDIVGN SASTQPSTSSAYGRAQMNC+PARYKIDPDFRKAYLVIQENLWRPVVKDPVVH+DGS+TVHYEVPAGNNECFELSK+LTPLMVERKELQICQGEVPHQINVFAEVAACLSALAMHSSVLKLFAPSGVLGPFLELSLEQLVPRETCLTALLDTPVKAYSQHAQVMRHLWSLI STVLDSETDAPESEGDDTEGNFGEDAVVQEGD DVSGEGAGD TVEPKAERRRQSDAETASWSSRIVQKKLEQALAVRVLDRLVAGADEDAFEP +SSSTRGD SWGSDKIGEQDSQQPGGGKGLS D GAKSKRRRSS ASAPLS+LDVGRRTSAEFRRQSLLMTSGRAYTVSGILSQQVLLSGIIVLASPTDESKD WRRVL +SLAAPVLSAQRRLEYFCIGLAGSVSDAVRRNWLALDG RTNARNAMKALMELCVDHMAVLVNKAELASFQNR D++T AT EP LS LATQR+SNNSAEEK PRAR QRESLTDPPEKPD+KS+PKRGL LSINPDVGKCR DE GGG GG GFDG M AAGV GDDRRHGR+Q ALFRQE SFDSAGAISALSGMSGLGVGGGAETRGGIEAFLLPEEEQVVQMLFRAILSLLSV+EECTTA D R GDGSENPRRQQSRTVGKNRWGSFRGRE QSR GVEAAGDSA GAEGRGDDT+RP AGAAGRLDDILRLCCRLLRCGPGDGVLHVSL AIGK+ + G P+ A N G G R S +RQ S+ ++E ASLDMDGDFDV QRSE GCIPPLLAMVRSG CNTERGAASMEQEVALCVLQDLASANNLCREAIV HGGVPVLLQAPENYSARARRAVA
Sbjct: 422 RCASDLTDYIASDPSVSNFLGTLFGLLARGSAKNMHQRVMGTFANLAYLCVAGGASTEWAGHLRESLKQFLLHFTETSDVLGNFNLDPLEAQDRQLKFQGVRFEV-----------------VDLLQ------------------------------CIATPSERYASDGSGGEGGHGYDTAVASEHSGRSFGGQERAVDASEQMRADTVRTFALWILAHYTGRSDDRVHVASHGGLTVLTSILMGPTGLVEAAKAGGASGGKPASKQSFINLKLAAKALANLCQAPQNAELVEPAGALAAIKALYAYISDNNDIVGNTSASTQPSTSSAYGRAQMNCIPARYKIDPDFRKAYLVIQENLWRPVVKDPVVHEDGSLTVHYEVPAGNNECFELSKKLTPLMVERKELQICQGEVPHQINVFAEVAACLSALAMHSSVLKLFAPSGVLGPFLELSLEQLVPRETCLTALLDTPVKAYSQHAQVMRHLWSLITSTVLDSETDAPESEGDDTEGNFGEDAVVQEGDGIDVSGEGAGDPTVEPKAERRRQSDAETASWSSRIVQKKLEQALAVRVLDRLVAGADEDAFEPAQSSSTRGDGSWGSDKIGEQDSQQPGGGKGLSFDEGAKSKRRRSSGASAPLSVLDVGRRTSAEFRRQSLLMTSGRAYTVSGILSQQVLLSGIIVLASPTDESKDKWRRVLSASLAAPVLSAQRRLEYFCIGLAGSVSDAVRRNWLALDGNRTNARNAMKALMELCVDHMAVLVNKAELASFQNRPDTETVATTEPSALSPLATQRNSNNSAEEKSPRARPQRESLTDPPEKPDTKSSPKRGLGLSINPDVGKCRGDEIGGGGGGCGFDGGMTAAGVGGDDRRHGREQPALFRQERSFDSAGAISALSGMSGLGVGGGAETRGGIEAFLLPEEEQVVQMLFRAILSLLSVKEECTTAEDSRLGDGSENPRRQQSRTVGKNRWGSFRGRERQSRLGVEAAGDSAGGAEGRGDDTSRPPAGAAGRLDDILRLCCRLLRCGPGDGVLHVSLQAIGKVSAAGG----------GGAPSAA------------------------NTPDGKPGTRR-SFTRQ-------------------------------------------SSSEWDSE----------------------ASLDMDGDFDVRQRSEDGCIPPLLAMVRSGGCNTERGAASMEQEVALCVLQDLASANNLCREAIVCHGGVPVLLQAPENYSARARRAVA 1537
BLAST of mRNA_Ecto-sp13_S_contig688.17852.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI) HSP 1 Score: 508 bits (1308), Expect = 8.440e-144 Identity = 267/292 (91.44%), Postives = 272/292 (93.15%), Query Frame = 1
Query: 6388 MSRQGYDGQPGQGRVSPVPGLTTAHQNASASREPSRTRSLNRRRVRYGSQLNGSLQVGVPGTHAYANRVRTGGSASSGLGMEEGTLQGNKDEHGLKFLGSLSDVFGDETVEVYLGSFHQQALISEAKKVLSQPRNRGLGVELVEGVTAVGVGRNSIAAVITTSRPYKKVTLEMSASMSERECPDPTGYISTTLAVIEDATGVSNLFVLDLCDTTNAQDPRDGRTSLMTAVLDNNETLVERLLVEGVDIAVTDTLNRTALLHSVISKHDAITQLLLAHHSELVRDRLNSARKV 7263
MSR GYDGQPGQ RVSPVPGLTTAHQNASASREPSR RSLNRRRV YGSQL+GSLQ G P T AYA RVRTGGS+SSG G+E G LQGNKD HGLKFLGSLSDVFGDE VEVYLGSFHQQALISEAKKVLSQPRNRGLGVELV GV AVGVGRNSI AVITTSRPYKKVTLEMSASMSERECPDP GYISTTLAVIEDA GVSNLFVLDLCDTTNAQDPRDGRTSLMTAVLDNNE LVERLLVEGVDIAVTDTLNRTALLHSVISKHDAITQLLLAHHSELVR+RLNSARK+
Sbjct: 1 MSRHGYDGQPGQDRVSPVPGLTTAHQNASASREPSRPRSLNRRRVSYGSQLSGSLQAGAPDTRAYATRVRTGGSSSSGFGIEGGALQGNKDGHGLKFLGSLSDVFGDEMVEVYLGSFHQQALISEAKKVLSQPRNRGLGVELVAGVAAVGVGRNSIGAVITTSRPYKKVTLEMSASMSERECPDPKGYISTTLAVIEDAMGVSNLFVLDLCDTTNAQDPRDGRTSLMTAVLDNNEMLVERLLVEGVDIAVTDTLNRTALLHSVISKHDAITQLLLAHHSELVRNRLNSARKL 292
BLAST of mRNA_Ecto-sp13_S_contig688.17852.1 vs. uniprot
Match: A0A6H5K7M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M8_9PHAE) HSP 1 Score: 460 bits (1184), Expect = 8.140e-143 Identity = 244/273 (89.38%), Postives = 253/273 (92.67%), Query Frame = 1
Query: 6442 PGLTTAHQNASASREPSRTRSLNRRRVRYGSQLNGSLQVGVPGTHAYANRVRTGGSASSGLGMEEGTLQGNKDEHGLKFLGSLSDVFGDETVEVYLGSFHQQALISEAKKVLSQPRNRGLGVELVEGVTAVGVGRNSIAAVITTSRPYKKVTLEMSASMSERECPDPTGYISTTLAVIEDATGVSNLFVLDLCDTTNAQDPRDGRTSLMTAVLDNNETLVERLLVEGVDIAVTDTLNRTALLHSVISKHDAITQLLLAHHSELVRDRLNSARK 7260
PGLTTA+QNASASREPSRTRSLNRR V YGSQL+GSL+ G P + AY RVRTGG +SSG G+E G LQGNKDEHGLK LGSLSDVFGDE VEVYLGSFHQQA+ISEAKKVLSQPRNRGLGVELV GV AVGVGR+SI AVITTS+PYKKVTLEMSAS SERECPDP GYISTTLAVIEDATGVSNLFVLDLCDTTNAQDPRDGRTSLMTAVLDNNETLVERLLVEGVDIAVTDTLNRTALLHSVISKHDAITQLLLAHHSELVRDRLN ARK
Sbjct: 13 PGLTTANQNASASREPSRTRSLNRR-VSYGSQLSGSLEAGAPDSRAYITRVRTGGLSSSGFGIEGGGLQGNKDEHGLKLLGSLSDVFGDELVEVYLGSFHQQAVISEAKKVLSQPRNRGLGVELVAGVAAVGVGRHSIGAVITTSKPYKKVTLEMSASTSERECPDPQGYISTTLAVIEDATGVSNLFVLDLCDTTNAQDPRDGRTSLMTAVLDNNETLVERLLVEGVDIAVTDTLNRTALLHSVISKHDAITQLLLAHHSELVRDRLNRARK 284 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig688.17852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig688.17852.1 >prot_Ecto-sp13_S_contig688.17852.1 ID=prot_Ecto-sp13_S_contig688.17852.1|Name=mRNA_Ecto-sp13_S_contig688.17852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=2421bp RCASDLTDYIASDPSVSNFLGTLFGLLARGGAKNMHQRVMGTFANLAYLCback to top mRNA from alignment at Ecto-sp13_S_contig688:48..22608+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig688.17852.1 ID=mRNA_Ecto-sp13_S_contig688.17852.1|Name=mRNA_Ecto-sp13_S_contig688.17852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=22561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig688:48..22608+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig688:48..22608+ >mRNA_Ecto-sp13_S_contig688.17852.1 ID=mRNA_Ecto-sp13_S_contig688.17852.1|Name=mRNA_Ecto-sp13_S_contig688.17852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=7263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig688:48..22608+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |