mRNA_Ecto-sp13_S_contig68748.17842.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68748.17842.1
Unique NamemRNA_Ecto-sp13_S_contig68748.17842.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A6H5LIS9_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LIS9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.860e-19
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    1 SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG
Sbjct:  128 SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 164          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A7S2FSL9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FSL9_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 1.360e-14
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1
Query:    1 SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            +SV VPDYY++PFHAY DGNLCWE+AWE  +AS+AVG
Sbjct:   85 ASVAVPDYYRQPFHAYEDGNLCWESAWEGEIASRAVG 121          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A7S0LBP4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LBP4_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 4.380e-12
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    7 VEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            +EVP+YY++PFHAY +GNLCW+AAWE  +AS+AVG
Sbjct:   97 IEVPEYYRQPFHAYEEGNLCWDAAWEGEIASRAVG 131          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A7S3W3K4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W3K4_9SPIT)

HSP 1 Score: 65.5 bits (158), Expect = 5.300e-12
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    4 SVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            ++  P+YY +PFHAY  GNLCWEAAWEQ LASKAVG
Sbjct:   66 ALSPPEYYCRPFHAYEAGNLCWEAAWEQELASKAVG 101          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A7S4B5K2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5K2_CHRCT)

HSP 1 Score: 67.0 bits (162), Expect = 5.720e-12
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            +SV VP+YYK PFH+Y  GNLCW+AAWE  +ASKAVG
Sbjct:  100 ASVRVPEYYKAPFHSYEKGNLCWDAAWEVEIASKAVG 136          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A7S4B5T4_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5T4_CHRCT)

HSP 1 Score: 67.0 bits (162), Expect = 6.180e-12
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            +SV VP+YYK PFH+Y  GNLCW+AAWE  +ASKAVG
Sbjct:  100 ASVRVPEYYKAPFHSYEKGNLCWDAAWEVEIASKAVG 136          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A0M0JPF6_9EUKA (Methyltransferase type 11 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JPF6_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 7.300e-12
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1
Query:   13 VPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            +PDYY++PFHAY DGNLCWE+AWE  +AS+AVG
Sbjct:   35 IPDYYRQPFHAYEDGNLCWESAWEGEIASRAVG 67          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A7S3S8Q0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S8Q0_EMIHU)

HSP 1 Score: 66.6 bits (161), Expect = 8.320e-12
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    1 SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            S+V +P+YY++PFHAY  GNLCW+AAWE  +AS+AVG
Sbjct:   88 SAVAIPEYYRRPFHAYEQGNLCWDAAWEGEIASRAVG 124          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: A0A8J5X8B6_DIALT (Methyltransf_25 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8B6_DIALT)

HSP 1 Score: 64.3 bits (155), Expect = 5.370e-11
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    7 VEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG 111
            V+VP+YY+ PFHAY  GNLCWEAA EQ LA KAVG
Sbjct:   77 VDVPEYYRAPFHAYEQGNLCWEAALEQELAGKAVG 111          
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Match: R1BAH0_EMIHU (Methyltransf_11 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BAH0_EMIHU)

HSP 1 Score: 62.8 bits (151), Expect = 1.010e-10
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAV 108
            S+V +P+YY++PFHAY  GNLCW+AAWE  +AS+A 
Sbjct:   65 SAVAIPEYYRRPFHAYEQGNLCWDAAWEGEIASRAA 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68748.17842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LIS9_9PHAE2.860e-19100.00Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A7S2FSL9_9EUKA1.360e-1472.97Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0LBP4_9EUKA4.380e-1268.57Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3W3K4_9SPIT5.300e-1272.22Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4B5K2_CHRCT5.720e-1270.27Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4B5T4_CHRCT6.180e-1270.27Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A0M0JPF6_9EUKA7.300e-1272.73Methyltransferase type 11 n=1 Tax=Chrysochromulina... [more]
A0A7S3S8Q0_EMIHU8.320e-1264.86Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A8J5X8B6_DIALT5.370e-1174.29Methyltransf_25 domain-containing protein n=2 Tax=... [more]
R1BAH0_EMIHU1.010e-1061.11Methyltransf_11 domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68748contigEcto-sp13_S_contig68748:167..280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score87.0
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FIY8
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2B2D0@1,2S0CH@2759
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-07_005080.1
Cds size114
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.9545355-CDS-Ecto-sp13_S_contig68748:166..2801681463943.9545355-CDS-Ecto-sp13_S_contig68748:166..280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68748 167..280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68748.17842.1prot_Ecto-sp13_S_contig68748.17842.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68748 167..280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68748.17842.1

>prot_Ecto-sp13_S_contig68748.17842.1 ID=prot_Ecto-sp13_S_contig68748.17842.1|Name=mRNA_Ecto-sp13_S_contig68748.17842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
SSVEVPDYYKKPFHAYADGNLCWEAAWEQHLASKAVG*
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mRNA from alignment at Ecto-sp13_S_contig68748:167..280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68748.17842.1 ID=mRNA_Ecto-sp13_S_contig68748.17842.1|Name=mRNA_Ecto-sp13_S_contig68748.17842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68748:167..280+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTCCGTGGAGGTCCCTGACTACTACAAGAAGCCGTTTCACGCCTATGC GGACGGAAACCTGTGCTGGGAGGCAGCCTGGGAGCAACACCTCGCTTCCA AGGCGGTCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68748:167..280+

>mRNA_Ecto-sp13_S_contig68748.17842.1 ID=mRNA_Ecto-sp13_S_contig68748.17842.1|Name=mRNA_Ecto-sp13_S_contig68748.17842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68748:167..280+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTCCGTGGAGGTCCCTGACTACTACAAGAAGCCGTTTCACGCCTATGC
GGACGGAAACCTGTGCTGGGAGGCAGCCTGGGAGCAACACCTCGCTTCCA
AGGCGGTCGGGTGA
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