mRNA_Ecto-sp13_S_contig68711.17837.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68711.17837.1
Unique NamemRNA_Ecto-sp13_S_contig68711.17837.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.260e-43
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RLDHVG+LLAEKKPWPAFLHLGARAT+EWE CPTPVQEALAWMA ATVGVLDM SV PLEPVCQAFKGLIEA EGAA++Q+KL
Sbjct:   29 RLDHVGQLLAEKKPWPAFLHLGARATKEWEACPTPVQEALAWMATATVGVLDMTSVGPLEPVCQAFKGLIEAAEGAAESQDKL 111
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.990e-42
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RLDHVGKLLAEKKPWPAFLH+GARATEEWE CPTPVQEAL WMA ATVGVLD+ASV PLEPVCQAFKGLIEA EGAA++Q+KL
Sbjct:   24 RLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALVWMARATVGVLDIASVGPLEPVCQAFKGLIEAAEGAAESQDKL 106
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: D7FUT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.290e-40
Identity = 67/83 (80.72%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RLDHVGKLLAEK+PWPAFL +GARA EEWE CPTPVQEALAWMA  TVGVLD ASV PL PVCQAFK LIEA E AA  Q+KL
Sbjct:   24 RLDHVGKLLAEKRPWPAFLQIGARANEEWEACPTPVQEALAWMATTTVGVLDTASVGPLVPVCQAFKALIEAAERAADGQDKL 106
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: D7FLM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM4_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.630e-39
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RLDHVGKLLAEKKPWPAFLH+ ARATEEWE CPTPVQEAL WMA ATVG+LD ASV PL PVCQ FK LIEA E A ++++KL
Sbjct:   24 RLDHVGKLLAEKKPWPAFLHITARATEEWEACPTPVQEALVWMATATVGLLDTASVGPLVPVCQTFKTLIEAAEDAEESEDKL 106
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.030e-37
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RLDHVGKLLAEKKPWPAFLH+GARATEEWE CPTPVQEALAWM  + VGVL +ASV PL PVC+AFK LIEA EGAA+ Q+KL
Sbjct:   69 RLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKL 151
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.040e-37
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RLDHVGKLLAEKKPWPAFLH+GARATEEWE CPTPVQEALAWM  + VGVL +ASV PL PVC+AFK LIEA EGAA+ Q+KL
Sbjct:   52 RLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKL 134
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.800e-34
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RL+HVGKLLAEK+PWPAFLH+GARATEEWE CPT  QEAL WM  A VGVLD+ASV PL PVCQA K LIEA EGAA+ ++K+
Sbjct:   27 RLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTLAQEALTWMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKV 109
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.830e-34
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RL+ VGKLLAEK+PWPAFLH+ ARATEEWE CPT  QEAL W+A ATVGVLD+ASV PL PVC+AFK LIEA EGAA++Q KL
Sbjct:   15 RLERVGKLLAEKRPWPAFLHIEARATEEWEACPTVAQEALTWIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKL 97
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.110e-23
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    4 LDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            L  V +LLA +KPWPAF+  G +A  EW  CP  V EAL WMA ATVG+LDMASV PL PVC+AF  LIEA EGA +  + L
Sbjct:   45 LQEVERLLASRKPWPAFVQAGLQARYEWNNCPEAVGEALEWMASATVGLLDMASVGPLTPVCKAFTSLIEAAEGAIEVAKNL 126
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BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.920e-22
Identity = 47/83 (56.63%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGVLDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL 249
            RL+ V  LLA KKPWPAFL  G     EW+ CP   ++AL WMA   VG+LD+ASV PL PVCQAF  LIEA +GA +  E L
Sbjct:   25 RLEEVETLLAYKKPWPAFLCAGVDVHGEWDNCPEGARDALEWMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENL 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68711.17837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KMV3_9PHAE7.260e-4387.95NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G6W2_ECTSI4.990e-4287.95NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUT5_ECTSI3.290e-4080.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLM4_ECTSI1.630e-3978.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G722_ECTSI1.030e-3780.72NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI1.040e-3780.72NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI1.800e-3474.70NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE2.830e-3475.90NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LL58_ECTSI2.110e-2359.76NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KK53_9PHAE8.920e-2256.63NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68711contigEcto-sp13_S_contig68711:22..271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.8
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog2880.D7G6W2
Model size252
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size249
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463943.7368796-CDS-Ecto-sp13_S_contig68711:21..2701681463943.7368796-CDS-Ecto-sp13_S_contig68711:21..270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68711 22..270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68711.17837.1prot_Ecto-sp13_S_contig68711.17837.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68711 22..270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68711.17837.1

>prot_Ecto-sp13_S_contig68711.17837.1 ID=prot_Ecto-sp13_S_contig68711.17837.1|Name=mRNA_Ecto-sp13_S_contig68711.17837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
RLDHVGKLLAEKKPWPAFLHLGARATEEWETCPTPVQEALAWMAGATVGV
LDMASVVPLEPVCQAFKGLIEATEGAAKAQEKL
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mRNA from alignment at Ecto-sp13_S_contig68711:22..271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68711.17837.1 ID=mRNA_Ecto-sp13_S_contig68711.17837.1|Name=mRNA_Ecto-sp13_S_contig68711.17837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=250bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68711:22..271+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCTCGACCATGTTGGCAAGCTACTCGCCGAAAAGAAGCCCTGGCCCGC
CTTTCTGCACCTCGGAGCTCGAGCAACGGAAGAGTGGGAGACTTGCCCCA
CCCCCGTACAGGAGGCTCTGGCGTGGATGGCGGGAGCCACGGTTGGGGTG
CTCGATATGGCGAGCGTAGTGCCCTTAGAGCCTGTTTGCCAGGCATTCAA
GGGGTTGATTGAGGCTACCGAAGGTGCAGCGAAGGCCCAGGAGAAGCTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68711:22..271+

>mRNA_Ecto-sp13_S_contig68711.17837.1 ID=mRNA_Ecto-sp13_S_contig68711.17837.1|Name=mRNA_Ecto-sp13_S_contig68711.17837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68711:22..271+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCTCGACCATGTTGGCAAGCTACTCGCCGAAAAGAAGCCCTGGCCCGC
CTTTCTGCACCTCGGAGCTCGAGCAACGGAAGAGTGGGAGACTTGCCCCA
CCCCCGTACAGGAGGCTCTGGCGTGGATGGCGGGAGCCACGGTTGGGGTG
CTCGATATGGCGAGCGTAGTGCCCTTAGAGCCTGTTTGCCAGGCATTCAA
GGGGTTGATTGAGGCTACCGAAGGTGCAGCGAAGGCCCAGGAGAAGCTC
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