mRNA_Ecto-sp13_S_contig68650.17829.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig68650.17829.1
Unique Name	mRNA_Ecto-sp13_S_contig68650.17829.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.730e-30
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW SKHNTTSHSDEEC QQ
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ 157

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5K783_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K783_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.160e-30
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW  KHNTTSHSDEEC QQ
Sbjct:  108 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCFKHNTTSHSDEECYQQ 166

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.150e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW SKHNTTSHSDEEC QQ
Sbjct:  236 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ 294

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5LLS9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.750e-29
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA  TKW SKHNTTSHSDEEC QQ
Sbjct:  122 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGGTKWCSKHNTTSHSDEECYQQ 180

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.380e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW SKHNTTSHSDEEC QQ
Sbjct:   47 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ 105

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 6.080e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW SKHNTTSHSDEEC QQ
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ 157

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.700e-29
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW  KHNTTSHSDEEC QQ
Sbjct:  195 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEECYQQ 253

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5JQ58_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ58_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.240e-29
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTAS+IICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW SKHNT SHSDEEC QQ
Sbjct:   91 MATTASNIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWYSKHNTLSHSDEECYQQ 149

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.000e-28
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW SKHNTTSHSDEEC QQ
Sbjct:  254 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ 312

[Close]

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.030e-28
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTSHSDEECNQQ 177
            MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPA ATKW SKHNTTSHSDEEC QQ
Sbjct:   29 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ 87

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig68650.17829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZM5_9PHAE	4.730e-30	94.92	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K783_9PHAE	8.160e-30	93.22	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JF66_9PHAE	1.150e-29	94.92	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5LLS9_9PHAE	1.750e-29	93.22	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KP59_9PHAE	2.380e-29	94.92	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JZ53_9PHAE	6.080e-29	94.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXR7_9PHAE	7.700e-29	93.22	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JQ58_9PHAE	9.240e-29	91.53	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L580_9PHAE	1.000e-28	94.92	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KMG5_9PHAE	1.030e-28	94.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig68650	contig	Ecto-sp13_S_contig68650:189..365 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	177
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Cds size	177

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463942.8772528-CDS-Ecto-sp13_S_contig68650:188..365	1681463942.8772528-CDS-Ecto-sp13_S_contig68650:188..365	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig68650 189..365 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig68650.17829.1	prot_Ecto-sp13_S_contig68650.17829.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig68650 189..365 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig68650:189..365-
coding sequence from alignment at Ecto-sp13_S_contig68650:189..365-

protein sequence of mRNA_Ecto-sp13_S_contig68650.17829.1

>prot_Ecto-sp13_S_contig68650.17829.1 ID=prot_Ecto-sp13_S_contig68650.17829.1|Name=mRNA_Ecto-sp13_S_contig68650.17829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAEATKWSSKHNTTS
HSDEECNQQ

mRNA from alignment at Ecto-sp13_S_contig68650:189..365-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig68650.17829.1 ID=mRNA_Ecto-sp13_S_contig68650.17829.1|Name=mRNA_Ecto-sp13_S_contig68650.17829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68650:189..365- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGG
GCACATCAGGAGGAACTGCCCCAAGATCAAGAACAGGGCGAAGAAGAAAA
CGAAGCCCGCCGAAGCTACGAAGTGGTCCTCCAAGCACAATACGACATCT
CACTCGGACGAGGAATGCAACCAGCAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68650:189..365-

>mRNA_Ecto-sp13_S_contig68650.17829.1 ID=mRNA_Ecto-sp13_S_contig68650.17829.1|Name=mRNA_Ecto-sp13_S_contig68650.17829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68650:189..365- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGG
GCACATCAGGAGGAACTGCCCCAAGATCAAGAACAGGGCGAAGAAGAAAA
CGAAGCCCGCCGAAGCTACGAAGTGGTCCTCCAAGCACAATACGACATCT
CACTCGGACGAGGAATGCAACCAGCAA