mRNA_Ecto-sp13_S_contig6862.17825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6862.17825.1
Unique NamemRNA_Ecto-sp13_S_contig6862.17825.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: D7FJB9_ECTSI (Catalytic/ hydrolase/ phosphoglycolate phosphatase/ phosphoric monoester hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.000e-29
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVT+NSTKSRKGYKSKFDSLG
Sbjct:   81 DVFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTNNSTKSRKGYKSKFDSLG 137
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A6H5JNQ2_9PHAE (PGLP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ2_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.760e-29
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIWKGDSLIEG+PSVLDRLRQAGKRIFFVT+NSTKSRKGYKSKFDSLG
Sbjct:   62 DVFIFDCDGVIWKGDSLIEGIPSVLDRLRQAGKRIFFVTNNSTKSRKGYKSKFDSLG 118
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A7S0HZT5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HZT5_9CRYP)

HSP 1 Score: 103 bits (258), Expect = 1.450e-26
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIWKGDSLI GVP VL++LR AGK+IFFVT+NSTKSRKGYK+KFDSLG
Sbjct:   77 DVFIFDCDGVIWKGDSLIPGVPEVLEKLRAAGKKIFFVTNNSTKSRKGYKAKFDSLG 133
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A7S0M2S9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M2S9_9CRYP)

HSP 1 Score: 104 bits (260), Expect = 5.760e-26
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIWKGDSLI G+P++LD+LR AGKRIFFVT+NSTKSRKGYK+KFD LG
Sbjct:   93 DVFIFDCDGVIWKGDSLIPGIPAILDKLRAAGKRIFFVTNNSTKSRKGYKAKFDELG 149
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: L1IY12_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IY12_GUITC)

HSP 1 Score: 103 bits (258), Expect = 7.370e-26
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIWKGDSLI GVP VL++LR AGK+IFFVT+NSTKSRKGYK+KFDSLG
Sbjct:    6 DVFIFDCDGVIWKGDSLIPGVPEVLEKLRAAGKKIFFVTNNSTKSRKGYKAKFDSLG 62
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A7S1LRU7_ALECA (Hypothetical protein n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S1LRU7_ALECA)

HSP 1 Score: 104 bits (259), Expect = 1.770e-25
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIW+GDSLI+G+P+VLD+LR AGKR FFVT+NSTKSRKGYK+KFDSLG
Sbjct:   61 DIFIFDCDGVIWRGDSLIDGIPAVLDKLRAAGKRCFFVTNNSTKSRKGYKAKFDSLG 117
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A8J5XDU9_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDU9_DIALT)

HSP 1 Score: 103 bits (256), Expect = 5.590e-25
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIWKGDSLIEGVP+VLD LR+AGKRIFFVT+NSTKSRKGY  KF SLG
Sbjct:   66 DVFIFDCDGVIWKGDSLIEGVPAVLDMLRKAGKRIFFVTNNSTKSRKGYVGKFTSLG 122
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A812JH33_9DINO (PGLP1B protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812JH33_9DINO)

HSP 1 Score: 102 bits (253), Expect = 8.170e-25
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIW+GDSLI+GVPSVLD+LR AGK+IFFVT+NSTKSR GYKSKF SLG
Sbjct:   18 DVFIFDCDGVIWRGDSLIDGVPSVLDQLRLAGKKIFFVTNNSTKSRVGYKSKFTSLG 74
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A7S2A8Z8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z8_TRICV)

HSP 1 Score: 99.8 bits (247), Expect = 8.550e-25
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIW+GDSLI+G+P  L +LR  GK++FFVT+NSTKSRKGYKSKFDSLG
Sbjct:   97 DVFIFDCDGVIWRGDSLIDGIPETLSKLRSLGKKMFFVTNNSTKSRKGYKSKFDSLG 153
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BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Match: A0A7S0VVN4_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVN4_9CRYP)

HSP 1 Score: 102 bits (255), Expect = 8.900e-25
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYKSKFDSLG 171
            D FIFDCDGVIWKGDSLI+GV  +LD+LR AGK+IFFVT+NSTKSRKGYK+KFDSLG
Sbjct:   82 DVFIFDCDGVIWKGDSLIDGVEPILDKLRAAGKKIFFVTNNSTKSRKGYKAKFDSLG 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6862.17825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJB9_ECTSI2.000e-2996.49Catalytic/ hydrolase/ phosphoglycolate phosphatase... [more]
A0A6H5JNQ2_9PHAE2.760e-2994.74PGLP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S0HZT5_9CRYP1.450e-2684.21Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S0M2S9_9CRYP5.760e-2682.46Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1IY12_GUITC7.370e-2684.21Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S1LRU7_ALECA1.770e-2582.46Hypothetical protein n=2 Tax=Alexandrium TaxID=292... [more]
A0A8J5XDU9_DIALT5.590e-2585.96Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A812JH33_9DINO8.170e-2584.21PGLP1B protein n=2 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A7S2A8Z8_TRICV8.550e-2577.19Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0VVN4_9CRYP8.900e-2582.46Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6862contigEcto-sp13_S_contig6862:7129..7758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score118.2
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D7FJB9
Preferred namePGP
Model size174
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237,GO:0044424,GO:0044444,GO:0044464
Exons2
EggNOG free text desc.phosphoglycolate phosphatase activity
EggNOG OGsCOG0647@1,KOG2882@2759
Ec32 ortholog description2-phosphoglycolate phosphatase, eukaryotic
Ec32 orthologEc-12_008080.1
EC3.1.3.18,3.1.3.41,3.1.3.48
Cds size174
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463942.6215765-CDS-Ecto-sp13_S_contig6862:7128..72291681463942.6215765-CDS-Ecto-sp13_S_contig6862:7128..7229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6862 7129..7229 +
1681463942.635042-CDS-Ecto-sp13_S_contig6862:7685..77581681463942.635042-CDS-Ecto-sp13_S_contig6862:7685..7758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6862 7686..7758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6862.17825.1prot_Ecto-sp13_S_contig6862.17825.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6862 7129..7758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6862.17825.1

>prot_Ecto-sp13_S_contig6862.17825.1 ID=prot_Ecto-sp13_S_contig6862.17825.1|Name=mRNA_Ecto-sp13_S_contig6862.17825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
DAFIFDCDGVIWKGDSLIEGVPSVLDRLRQAGKRIFFVTHNSTKSRKGYK
SKFDSLG*
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mRNA from alignment at Ecto-sp13_S_contig6862:7129..7758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6862.17825.1 ID=mRNA_Ecto-sp13_S_contig6862.17825.1|Name=mRNA_Ecto-sp13_S_contig6862.17825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6862:7129..7758+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCCTTCATCTTCGACTGTGACGGCGTGATCTGGAAGGGCGACAGCCT
CATCGAAGGCGTGCCCTCCGTCCTTGACCGTCTACGACAGGCCGGAAAAC
GGTGAGGCTCTCGTTAACCGGTAGCAGATGGCGGGTTGCTTTGGCTGGGA
GAGCGAGCAGAGATCGTGCGGTTGTCGAGCCGATCCACTTCGTAAAACGC
GCGTGTATTGGGAGAGGGTTACATATGTACGACACTGGTAAGTCATCTAG
CCCATGAGTTAGTTCACCGCTTTTGTCGTCAAACGCACGGTGAGAAGTGA
ATATGCTCTGCGTTTATGAGAAGCAAAATAACAGCGTTTTGAGTAACGTT
TCAAAAAAACGTGGTAGTTGAATCTGTGGGCATTTTTGCAAGAAAGGTTG
TAGTAACGCATACCCTAGGCAACAATTACTATGTAGAAGACAAACCTAGC
CCGAAATGTTCGTGTTTTATGTTTTGTGGTACACTTCTACGGACTTGGTT
GTTTTGGCTCCCTTCCCCGACCCGCCCCCCCTCGAAAATTGCTTGGCGGC
GCCGCAGGATATTCTTCGTAACACACAACTCTACCAAGAGCCGCAAGGGT
TACAAGTCCAAGTTCGACTCCCTTGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6862:7129..7758+

>mRNA_Ecto-sp13_S_contig6862.17825.1 ID=mRNA_Ecto-sp13_S_contig6862.17825.1|Name=mRNA_Ecto-sp13_S_contig6862.17825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6862:7129..7758+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCCTTCATCTTCGACTGTGACGGCGTGATCTGGAAGGGCGACAGCCT
CATCGAAGGCGTGCCCTCCGTCCTTGACCGTCTACGACAGGCCGGAAAAC
GGATATTCTTCGTAACACACAACTCTACCAAGAGCCGCAAGGGTTACAAG
TCCAAGTTCGACTCCCTTGGGTAG
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