mRNA_Ecto-sp13_S_contig6859.17822.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Match: D7FTE0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI) HSP 1 Score: 440 bits (1132), Expect = 5.540e-140 Identity = 267/516 (51.74%), Postives = 330/516 (63.95%), Query Frame = 1
Query: 418 QDKSESYLSFAVNIVTKLRPEDVPKEFGLMLVITNKMRVTLHIAHHRVIGDYLSACCNNVVELPQ---AQNVVTQREVCSMVLAADRRMSQAFVADMTSAKVFQ--------NLENREPGLRGEFHREPEGGGVMQEGDDQVWCAGTEGVACEKEELANLVHREPDVPPPGAAMKRLIREALPDLTSVAKTLDRSNTCSGVAGLLFHGNVSYMQAIAGDQSESLESLDACVDVVLRYPGITRFRPHMVHCMLAAGHFFNRRDMYDAMRRVYNSILPMGCSQAPPYEEWRSVSQICGDILCRSLEAQALQPRDEEGPWQSNPAADGLAPYGLLSGLMESPYHGVETRSSGSPP-----------APATATGVSAVPSVLPETPHARRRVSQNVVGDDFAAADAAGDMRRKPGLAA--MLIPESACSEEASEACGVRQ-NWSRPAAPGQHLRSGGDTVAENAAAXXXXXXXXXXXXXXHTHTVEPVEEDVELWGREITLTDADLMDAAAVFARDEGLL 1890
+DK+E Y+SFAVNIV+KLRPEDVPKE GLML+ T+K+RV+ A + GD LS C+ +ELPQ AQ+ +T +V ++ L AD +SQAF+ADMTSA + E EP L GE +RE GGGVM+EG QV AG VAC+ EELAN HREPDVPP G AMKR REALP++TS+AKTL+ S+TCSGV G+L+HGNV+YM+AIAGD +S ESL ACVDVVLRYPG+ RFR H++HCMLAA HFFNRRDMYDAMR VYNS+ PMG Q PPYEEWR++ Q+C ++CRS+EA+ LQ R EGP Q+N ++ G M SP G +++SSG+PP AP TATG +AV S LP+TPH Q+V G+D AA GDM + GL A M IPE S + EA GVR WSR AA G+ +RS A + +V G E+ +TDADL+D AA FA DEGLL
Sbjct: 316 EDKNERYMSFAVNIVSKLRPEDVPKELGLMLMTTDKLRVS---ACNPQPGDDLSTSCDEALELPQVREAQHPLTPTDVTNVFLVADGLLSQAFIADMTSAGAIPASGGGAAPHEEKGEPVL-GESYRELGGGGVMEEGGKQVRSAG---VACDDEELANRSHREPDVPPTGPAMKRFAREALPEMTSLAKTLESSDTCSGVGGVLYHGNVAYMRAIAGDLDKSFESLQACVDVVLRYPGLVRFRSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQIPPYEEWRTIRQVCPHVMCRSMEAERLQ-RYGEGPVQTNAPSEEPVTSEPSPGSMTSPLSGADSQSSGAPPEGLASEEQGSLAPTTATGATAVSSPLPDTPHTSATFVQDVDGNDGAAT---GDMPLQRGLVATAMPIPELVYSAK-GEAGGVRHAGWSRAAATGEQVRSSTTAPAPGSPKIGFKWWGG----------------EVVSGGAEMNMTDADLLDIAAAFANDEGLL 803
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Match: D7FTD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD9_ECTSI) HSP 1 Score: 428 bits (1100), Expect = 6.060e-138 Identity = 262/515 (50.87%), Postives = 328/515 (63.69%), Query Frame = 1
Query: 421 DKSESYLSFAVNIVTKLRPEDVPKEFGLMLVITNKMRVTLHIAHHRVIGDYLSACCNNVVELP---QAQNVVTQREVCSMVLAADRRMSQAFVADMTSAKVFQ--------NLENREPGLRGEFHREPEGGGVMQEGDDQVWCAGTEGVACEKEELANLVHREPDVPPPGAAMKRLIREALPDLTSVAKTLDRSNTCSGVAGLLFHGNVSYMQAIAGDQSESLESLDACVDVVLRYPGITRFRPHMVHCMLAAGHFFNRRDMYDAMRRVYNSILPMGCSQAPPYEEWRSVSQICGDILCRSLEAQALQPRDEEGPWQSNPAADGLAPYGLLSGLMESPYHGVETRSSGSPPA-----------PATATGVSAVPSVLPETPHARRRVSQNVVGDDFAAADAAGDMRRKPGLAA--MLIPESACSEEASEACGVRQ-NWSRPAAPGQHLRSGGDTVAENAAAXXXXXXXXXXXXXXHTHTVEPVEEDVELWGREITLTDADLMDAAAVFARDEGLL 1890
DK+E YLSFAVNIV+KLRPEDVPKE GLML+ T+K+RV+ ++ GD LS C VELP +AQ+++T +V + LAAD +++AFVADM SA + EN EP L G+ +RE GGGVM+EG ++W A VA E EEL N VHREPDVPP G+AMK LIREALP++ S+AKTL+ S+TCSG G+L+HGNV+YM+AIAGD ++ ESL ACVDVVLRYPG+ RFR H++HCMLAA HFFNRRDMYDAMR VYNS+ PMG Q PPYEEWR++ Q+C +LCRS+EA+ LQ DE GP Q+ A++ G ++S G +++SSGSPPA P TATG +AV S LP+TPH Q+V G+D AA GDM + GL A M IPES S + + GVR WSR AA G+H RS A + +V G E+ +TDADL+D AA FA DEGLL
Sbjct: 100 DKNERYLSFAVNIVSKLRPEDVPKELGLMLMTTDKLRVS---PCNQPPGDDLSTSCGEAVELPRVREAQHLLTPTDVSNAFLAADSLITRAFVADMMSAGAIPASGGGAAPHEENGEPVL-GKSYRELGGGGVMEEGRKRMWNAD---VAWEDEELGNQVHREPDVPPAGSAMKLLIREALPEMASLAKTLESSDTCSGAGGVLYHGNVAYMRAIAGDLDKAFESLQACVDVVLRYPGLVRFRSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQIPPYEEWRTIRQVCPHVLCRSMEAEILQHLDE-GPGQTTNASEEPVTSEPSPGSIKSFRSGADSQSSGSPPAGLASEEQGSLAPTTATGATAVSSPLPDTPHTLATFVQDVDGNDGAAT---GDMPLQRGLVATAMPIPESVYSAK-GDTGGVRHAGWSRAAATGEHPRSSTAAPAPGSPKIGFEWWGG----------------EVVSGGAEMNMTDADLLDIAAAFANDEGLL 586
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Match: D7FTD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD6_ECTSI) HSP 1 Score: 414 bits (1063), Expect = 1.010e-133 Identity = 241/497 (48.49%), Postives = 309/497 (62.17%), Query Frame = 1
Query: 451 VNIVTKLRPEDVPKEFGLMLVITNKMRVTLHIAHHRVIGDYLSACCNNVVELPQAQNVVTQREVCSMVLAADRRMSQAFVADMTSAKVF-------QNLENREPGLRGEFHREPEGGGVMQEGDDQVWCAGTEGVACEKEELANLVHREPDVPPPGAAMKRLIREALPDLTSVAKTLDRSNTCSGVAGLLFHGNVSYMQAIAGDQSESLESLDACVDVVLRYPGITRFRPHMVHCMLAAGHFFNRRDMYDAMRRVYNSILPMGCSQAPPYEEWRSVSQICGDILCRSLEAQALQPRDEEGPWQSNPAADGLAPYGLLSGLMESPYHGVETRSSGSPPAPA--------TATGVSAVPSVLPETPHARRRVSQNVVGDDFAAADAAGDMRRKP-GLAAMLIPESACSEEASEACGVRQNWSRPAA-PGQHLRSGGDTVAENAAAXXXXXXXXXXXXXXHTHTVEPVEEDVELWGREITLTDADLMDAAAVFARDEGLL 1890
+NIV++L PE PKE G ML+ T KMR+ + RV D L+A CNNVVELP+ +NVV + ++C ++L ADRR++QAFVADMTS+ Q EN EP ++GE HRE G G+++E ++V GT G A + EL + +H EP+VPP GAAMKR ++E LP++T + KTL+RSN CSGV GL +H NV+YM+ + GD + ++ L A D+VLRYPGI RFRPH +HC LA HF RRDMYDAM VYNSI P GC +APPYEEWR+++QIC ++ CRS EA+ + EG Q+N + + G SG M+SP G E ++ GS PA T T +AVPS LPE HA +S++ V + AD A D RR+P AMLIPES S EA+EA GVR WS AA PGQ S G+ A AAA E D+ L G E+ LTD DL+DAAAVFA DEGLL
Sbjct: 1 MNIVSQLGPEKAPKELGAMLLTTEKMRLFKKMGCSRVRTDDLTAYCNNVVELPRVENVVMKNDLCHLLLVADRRLNQAFVADMTSSGTLAAVRGAAQRKENEEP-VQGESHREWGGSGMVEENGERVRGKGTRGPASDDNELVDSLHDEPEVPPSGAAMKRFVQETLPEMTRLTKTLERSNVCSGVGGLFYHSNVAYMKTVNGDVEDLIKCLQASADIVLRYPGIVRFRPHFIHCTLAVSHFSKRRDMYDAMNGVYNSIRPPGCWRAPPYEEWRTITQICDNMFCRSFEAEIHKAHHGEGLMQTNVSDNEDVTSGPASGSMKSPCIGAERQNGGSLPAELCQRLPVSMTPTDATAVPSPLPEPRHAPPSLSEDGVRNGDTGADDARDRRRQPVAETAMLIPESVFSAEAAEAGGVRAGWSSAAAGPGQQFCSEGNNGAGGAAAAAVARNPKVGP--------EVWGGDMALGGSEMALTDEDLLDAAAVFASDEGLL 488
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE) HSP 1 Score: 419 bits (1077), Expect = 9.380e-132 Identity = 265/526 (50.38%), Postives = 325/526 (61.79%), Query Frame = 1
Query: 415 VQDKSESYLSFAVNIVTKLRPEDVPKEFGLMLVITNKMRVTLHIAHHRVIGDYLSACCNNVVELP---QAQNVVTQREVCSMVLAADRRMSQAFVADMTSAKVFQ--------NLENREPGLRGEFHREPEGGGVMQEGDDQVWCAGTEGVACEKEELANLVHREPDVPPPGAAMKRLIREALPDLTSVAKTLDRSNTCSGVAGLLFHGNVSYMQAIAGDQSESLESLDACVDVVLRYPGITRFRPHMVHCMLAAGHFFNRRDMYDAMRRVYNSILPMGCSQAPPYEEWRSVSQICGDILCRSLEAQALQPRDEEGPWQSNPAADGLAPYGLLSGLMESPYHGVETRSSGSPPA-------------PATATGVSAVPSVLPETPHARRRVSQNVVGDDFAAADAAGDMRRKPGLAAM--LIPESACSEEASEACGVRQ-NWSRPAAPGQHLRSGGDTVAENAAAXXXXXXXXXXXXXXHTHTVEPVEEDVELWG-------REITLTDADLMDAAAVFARDEGLL 1890
+ DK+E YLSFAVNIV+KLRPEDVPKE GLMLV TNK+RV + GD LS C+ VELP +AQ+ +T +V + LAAD +++AFVADM SA + EN EP L G + RE GGGVM+EG + W AG V E EELAN VHREPDVPP G AMK LI+EALP++TS+AKTL+ S+TCSGV G+L+HGNV+YM+A+AG+ ++ ESL+ACVDVVLRYPG+ RF+ H++HCMLAA HFFNRRDMYDAM+RVYNS+ PMG QAPPYEEWR++ Q+C ILCRSLE + Q DE G Q+N A LSGL S G +++SSG PPA TATGV+AV S LP PH + G+D A+A GDM +PGL A LIPES S + EA VR +W AA G+ RSG A + +E WG E+ +TDADL+D AAVFA DEGLL
Sbjct: 318 IDDKNERYLSFAVNIVSKLRPEDVPKELGLMLVTTNKLRVC---PCNPQPGDDLSTSCDEAVELPRVREAQHPLTPTDVSNAFLAADSLITRAFVADMMSAGAITASGGGAAPHEENGEPVLGGSY-RELGGGGVMEEGGKREWNAG---VTWEGEELANRVHREPDVPPAGPAMKLLIQEALPEMTSLAKTLESSDTCSGVGGVLYHGNVAYMRAVAGELVKAFESLEACVDVVLRYPGLVRFKSHLIHCMLAASHFFNRRDMYDAMKRVYNSVGPMGYPQAPPYEEWRTIRQVCPHILCRSLEVELHQHLDE-GLVQANAAPKDPETSEPLSGLFNSTLSGSDSQSSGPPPAGLAXXXXXXXXXXXXTATGVTAVSSPLPAPPHTFPTFMPDGGGNDGASA---GDMPLQPGLVATATLIPESVYSAK-GEAGDVRHADWLHAAATGERPRSGTGARAPGSPKIG-----------------------LEWWGGDVVSGEAEMNMTDADLLDIAAVFANDEGLL 808
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Match: A0A6H5L0K0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE) HSP 1 Score: 373 bits (958), Expect = 5.730e-114 Identity = 255/550 (46.36%), Postives = 318/550 (57.82%), Query Frame = 1
Query: 424 KSESYLSFAVNIVTKLRPEDVPKEFGLMLVITNKMRVTLHIAHHRVIGDYLSACCNNVVELPQ---AQNVVTQREVCSMVLAADRRMSQAFVADMTSAKVFQ--------NLENREPGLRGEFHREPEGGGVMQEGDDQVWCAGTEGVACEKEELANLVHREPDVPPPGAAMKRLIREALPDLTSVAKTLDRSNTCSGVAGLLFH---GNVSYMQAIAGDQSESLESLDACVDVVLRYPGITRFR--PHMVHCMLAAGHFFNRRDMYDAMRRVYNSILPMGCSQAPPYEEWRSVSQICGDILC-------------------------------RSLEAQALQPRDEEGPWQSNPAADGLAPYGLLSGLMESPYHGVETRSSGSPP-----------APATATGVSAVPSVLPETPHARRRVSQNVVGDDFAAADAAGDMRRKPGLAA--MLIPESACSEEASEACGVRQ-NWSRPAAPGQHLRSGGDTVAENAAAXXXXXXXXXXXXXXHTHTVEPVEEDVELWGREITLTDADLMDAAAVFARDEGLL 1890
K+E Y+S AVNI +KLRPEDVPKE LML+ T+ +RV+ A + GD LS C+ +ELPQ AQ+ +T +V ++ LAAD +SQAFVADMTSA + EN EP L G+ +RE GGGVM+EG QV AG VAC+ EELAN +HREPDVPP G AMKR REALP++TS+AKTL+R A ++F NV+YM+A+AG+ ++ ESL+ACVDVVLRYPG+ RFR H++HCMLAA HFFNRRDMYDAMR VYNS+ PMG Q PPYEEWR++ Q+C ILC RS+E + LQ R EGP Q+N A++ L LSG + SP G +T+SSG+PP AP A G +AV S LPE H + +D AAA DM +PGL A M IPE S + EA GVR+ +WS AA G RSG A ++ DV E+ +TDADL+D AAVFA DEGLL
Sbjct: 314 KNERYMSLAVNIASKLRPEDVPKELWLMLMTTDNLRVS---ACNPQPGDDLSTSCDEALELPQVREAQHPLTPTDVSNVFLAADSLLSQAFVADMTSAGAITASGRGAAPHEENGEPAL-GDSYRELGGGGVMEEGGKQVRSAG---VACDDEELANRLHREPDVPPTGPAMKRFAREALPEMTSLAKTLERFVPTRARASVVFSITGDNVAYMRAVAGELVKAFESLEACVDVVLRYPGLVRFRRTSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQVPPYEEWRTIRQVCPHILCSFRTDLLPPRCSNVFGVFRRIRPHSFVAPVKRSMEVERLQ-RYGEGPVQTNAASEELVMSEALSGSITSPLSGADTKSSGAPPGGLASEEQGSLAPTRAIGGTAVSSPLPEFSHTLATFVPDGGRNDDAAAR---DMPLQPGLVATAMPIPEPVYSAK-GEAGGVRRADWSGAAATGGQPRSGTGARAPDSPKIGFEWWGG----------------DVVSGEAEMNMTDADLLDIAAVFANDEGLL 835
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Match: A0A6H5KT43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT43_9PHAE) HSP 1 Score: 165 bits (417), Expect = 9.840e-43 Identity = 102/187 (54.55%), Postives = 127/187 (67.91%), Query Frame = 1
Query: 439 LSFAVNIVTKLRPEDVPKEFGLMLVITNKMRVTLHIAHHRVIGDYLSACCNNVVELPQ---AQNVVTQREVCSMVLAADRRMSQAFVADMTSAKVFQ--------NLENREPGLRGEFHREPEGGGVMQEGDDQVWCAGTEGVACEKEELANLVHREPDVPPPGAAMKRLIREALPDLTSVAKTLDR 966
+S AVNI +KLRPEDVPKE LML+ T+ +RV+ A + GD LS C+ +ELPQ AQ+ +T +V ++ LAAD +SQAFVADMTSA + EN EP L G+ +RE GGGVM+EG QV AG VAC+ EELAN +HREPDVPP G AMKR REALP++TS+AKTL+R
Sbjct: 1 MSLAVNIASKLRPEDVPKELWLMLMTTDNLRVS---ACNPQPGDDLSTSCDEALELPQVREAQHPLTPTDVSNVFLAADSLLSQAFVADMTSAGAITASGRGAAPHEENGEPAL-GDSYRELGGGGVMEEGGKQVRSAG---VACDDEELANRLHREPDVPPTGPAMKRFAREALPEMTSLAKTLER 180
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Match: D7FY46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY46_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 7.160e-11 Identity = 40/143 (27.97%), Postives = 73/143 (51.05%), Query Frame = 1
Query: 910 RLIREALPDLTSVAKTLDRSNTCSGVAGLLFHGNVSYMQAI------AGDQSESLESLDACVDVVLRYPGITRFR--PHMVHCMLAAGHFFNRRDMYDAMRRVYNSILPMGCSQAPPYEEWRSVSQICGDILCRSLEAQALQP 1314
++ R ALP++ + + + S V LL++ N+S +Q + GD ++++E++ + V+LR+PG+ R++ H+ H L R+ Y+ +R YN + P G P +E W+ +S IC + CR E P
Sbjct: 92 KMHRGALPEMLRLKEHFESSMRLD-VGRLLYYMNLSLLQLVNHGRGGGGDVADAVEAVQRGLRVILRFPGLCRYKCWSHLCHTQLWCLALGPDREPYEELRAAYNPVRPSGSPLVPAFEHWQGMSDICNHVHCRRGERMGFAP 233 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6859.17822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6859.17822.1 >prot_Ecto-sp13_S_contig6859.17822.1 ID=prot_Ecto-sp13_S_contig6859.17822.1|Name=mRNA_Ecto-sp13_S_contig6859.17822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=551bp MFTCSPSSRRSTALFLNGIVLSTGFTSHFSVMLFVHVLAGVCSSPHACRCback to top mRNA from alignment at Ecto-sp13_S_contig6859:1438..5953- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6859.17822.1 ID=mRNA_Ecto-sp13_S_contig6859.17822.1|Name=mRNA_Ecto-sp13_S_contig6859.17822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6859:1438..5953- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6859:1438..5953- >mRNA_Ecto-sp13_S_contig6859.17822.1 ID=mRNA_Ecto-sp13_S_contig6859.17822.1|Name=mRNA_Ecto-sp13_S_contig6859.17822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6859:1438..5953- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |