mRNA_Ecto-sp13_S_contig68517.17812.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68517.17812.1
Unique NamemRNA_Ecto-sp13_S_contig68517.17812.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68517.17812.1 vs. uniprot
Match: A0A6H5JWM9_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.490e-18
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:    3 DGGGAPGQSSRRASPPTCPPPGPGVSPAGEAGGKRARAGCGESNISSKTFVGGSTAAXXXXATEMFQQQVEI 218
            DGG APG+SSRRAS PTCPPPGP VSPAGEAGG RARAG GES IS KT VG STAA    ATEMFQQ VEI
Sbjct:  117 DGGDAPGRSSRRASSPTCPPPGPRVSPAGEAGGNRARAGFGESMIS-KTAVGDSTAAAAAAATEMFQQ-VEI 186
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68517.17812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWM9_9PHAE2.490e-1879.17FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68517contigEcto-sp13_S_contig68517:496..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size219
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_008150.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463941.3778358-CDS-Ecto-sp13_S_contig68517:495..7141681463941.3778358-CDS-Ecto-sp13_S_contig68517:495..714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68517 496..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68517.17812.1prot_Ecto-sp13_S_contig68517.17812.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68517 496..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68517.17812.1

>prot_Ecto-sp13_S_contig68517.17812.1 ID=prot_Ecto-sp13_S_contig68517.17812.1|Name=mRNA_Ecto-sp13_S_contig68517.17812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MMAAVPLASLPAVPRHRRAHLLGPVCRQQGKRAARERARGVAKAILAARP
SWEVAQQRRPLLQRKCSNNKWR*
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mRNA from alignment at Ecto-sp13_S_contig68517:496..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68517.17812.1 ID=mRNA_Ecto-sp13_S_contig68517.17812.1|Name=mRNA_Ecto-sp13_S_contig68517.17812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68517:496..714+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCGGCGGTGCCCCTGGCCAGTCTTCCCGCCGTGCCTCGCCACCG
ACGTGCCCACCTCCTGGGCCCGGTGTGTCGCCAGCAGGGGAAGCGGGCGG
CAAGAGAGCGCGCGCGGGGTGTGGCGAAAGCAATATTAGCAGCAAGACCT
TCGTGGGAGGTAGCACAGCAGCGGCGGCCGCTGCTGCAACGGAAATGTTC
CAACAACAAGTGGAGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68517:496..714+

>mRNA_Ecto-sp13_S_contig68517.17812.1 ID=mRNA_Ecto-sp13_S_contig68517.17812.1|Name=mRNA_Ecto-sp13_S_contig68517.17812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68517:496..714+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCGGCGGTGCCCCTGGCCAGTCTTCCCGCCGTGCCTCGCCACCG
ACGTGCCCACCTCCTGGGCCCGGTGTGTCGCCAGCAGGGGAAGCGGGCGG
CAAGAGAGCGCGCGCGGGGTGTGGCGAAAGCAATATTAGCAGCAAGACCT
TCGTGGGAGGTAGCACAGCAGCGGCGGCCGCTGCTGCAACGGAAATGTTC
CAACAACAAGTGGAGATAG
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