mRNA_Ecto-sp13_S_contig6851.17810.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6851.17810.1
Unique NamemRNA_Ecto-sp13_S_contig6851.17810.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6851.17810.1 vs. uniprot
Match: D7FYG8_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYG8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.110e-8
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   16 QVAIADQTHQMVADRLKRLTTDLASFEQVTES 111
            +VAIADQTHQMVADRLKRLTTDLASFEQ   S
Sbjct:  102 KVAIADQTHQMVADRLKRLTTDLASFEQTLHS 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6851.17810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYG8_ECTSI3.110e-887.50SGF29 C-terminal domain-containing protein n=2 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6851contigEcto-sp13_S_contig6851:30..140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463941.2828703-CDS-Ecto-sp13_S_contig6851:29..1401681463941.2828703-CDS-Ecto-sp13_S_contig6851:29..140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6851 30..140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6851.17810.1prot_Ecto-sp13_S_contig6851.17810.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6851 30..140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6851.17810.1

>prot_Ecto-sp13_S_contig6851.17810.1 ID=prot_Ecto-sp13_S_contig6851.17810.1|Name=mRNA_Ecto-sp13_S_contig6851.17810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
MFVLSQVAIADQTHQMVADRLKRLTTDLASFEQVTES
back to top

mRNA from alignment at Ecto-sp13_S_contig6851:30..140-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6851.17810.1 ID=mRNA_Ecto-sp13_S_contig6851.17810.1|Name=mRNA_Ecto-sp13_S_contig6851.17810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6851:30..140- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGTCTTGTCACAGGTTGCAATCGCGGACCAGACGCACCAGATGGT
GGCAGACAGACTAAAGAGGCTCACGACGGACCTCGCTAGCTTCGAGCAGG
TGACGGAGTCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6851:30..140-

>mRNA_Ecto-sp13_S_contig6851.17810.1 ID=mRNA_Ecto-sp13_S_contig6851.17810.1|Name=mRNA_Ecto-sp13_S_contig6851.17810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6851:30..140- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGTCTTGTCACAGGTTGCAATCGCGGACCAGACGCACCAGATGGT
GGCAGACAGACTAAAGAGGCTCACGACGGACCTCGCTAGCTTCGAGCAGG
TGACGGAGTCT
back to top