mRNA_Ecto-sp13_S_contig68225.17774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68225.17774.1
Unique NamemRNA_Ecto-sp13_S_contig68225.17774.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68225.17774.1 vs. uniprot
Match: D7G7H1_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.520e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 QVLDKSRVVKVVARNTGRSVWLVQGSRGAPYLCLREYCSCR 123
            QVLDKSRVVKVVARNTGRSVWLVQGSRGAPYLCLREYCSCR
Sbjct:  165 QVLDKSRVVKVVARNTGRSVWLVQGSRGAPYLCLREYCSCR 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68225.17774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7H1_ECTSI2.520e-20100.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68225contigEcto-sp13_S_contig68225:46..171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000250.1
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463937.831099-CDS-Ecto-sp13_S_contig68225:45..1711681463937.831099-CDS-Ecto-sp13_S_contig68225:45..171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68225 46..171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68225.17774.1prot_Ecto-sp13_S_contig68225.17774.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68225 46..171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68225.17774.1

>prot_Ecto-sp13_S_contig68225.17774.1 ID=prot_Ecto-sp13_S_contig68225.17774.1|Name=mRNA_Ecto-sp13_S_contig68225.17774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
QVLDKSRVVKVVARNTGRSVWLVQGSRGAPYLCLREYCSCR*
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mRNA from alignment at Ecto-sp13_S_contig68225:46..171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68225.17774.1 ID=mRNA_Ecto-sp13_S_contig68225.17774.1|Name=mRNA_Ecto-sp13_S_contig68225.17774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68225:46..171+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTACTGGATAAGTCTCGAGTGGTGAAGGTGGTGGCGAGAAATACGGG
CAGAAGCGTGTGGCTCGTTCAAGGAAGCCGGGGGGCTCCGTACCTGTGCC
TTAGGGAGTACTGCTCCTGCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68225:46..171+

>mRNA_Ecto-sp13_S_contig68225.17774.1 ID=mRNA_Ecto-sp13_S_contig68225.17774.1|Name=mRNA_Ecto-sp13_S_contig68225.17774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68225:46..171+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTACTGGATAAGTCTCGAGTGGTGAAGGTGGTGGCGAGAAATACGGG
CAGAAGCGTGTGGCTCGTTCAAGGAAGCCGGGGGGCTCCGTACCTGTGCC
TTAGGGAGTACTGCTCCTGCAGGTGA
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