mRNA_Ecto-sp13_S_contig682.17768.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig682.17768.1
Unique NamemRNA_Ecto-sp13_S_contig682.17768.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: D8LJA1_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJA1_ECTSI)

HSP 1 Score: 1250 bits (3235), Expect = 0.000e+0
Identity = 626/638 (98.12%), Postives = 631/638 (98.90%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGSDPRARAGGPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPTLGVNRDDLFEALGHVYT+KEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPA GA ARQKMTVGSGAAKIRPYVVCAVLRGVTFN+KSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDD SGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEM E EGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARN RRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSG+DPRAR GGPWRENMRYRI+PVDRPTFFPGRCADVLLMVKDTEEGGSAGW+EIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM
Sbjct:    1 MPTLGVNRDDLFEALGHVYTEKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAGGAGARQKMTVGSGAAKIRPYVVCAVLRGVTFNSKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDNSGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMGEEEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNCRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGNDPRARVGGPWRENMRYRIDPVDRPTFFPGRCADVLLMVKDTEEGGSAGWREIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 638          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: A0A835YVN2_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN2_9STRA)

HSP 1 Score: 749 bits (1934), Expect = 2.490e-260
Identity = 396/653 (60.64%), Postives = 481/653 (73.66%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLR---RQEEPCVSLSNPKHV-----EYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGSDPRARAGG-----PWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGS-AGWKEIRLGSFGMLHPEVLKAYDLRD-PSSAVEIDLEPLM 1975
            MPT+GV RDDLF+ALG  YT++EFDELCFEFGIELDEVT+E  E   Q                ++YK+DIPANRYDLLC+EGLARAL +FLG+   P FR VEPA+G   RQ +TV    A+IRPYVVCAVLRGVTF+A++YKSF+DLQDKLHQNICRRRTLVAIG HDL+T++GPF Y+A+PP DI+FVPL P D+G F AKALLDLYNTD +VKHLKPYT IIY+S VYPV+ DA   V SLPPVING+ SRI+  T +VFIECTATDLTKANIVLDT+V MFS+ C D F+ EPVDV Y+  +G+  TTPLLS+RT + ++A+I  I+GV++  EE CRLC KMQLGPA V      +GG  I VT PPTRSD+LH VDVVEDVAIA+G+N +P   P   TVG  QPL    DLLR E++RAGY E+LTHGLC R +   + R    +E P  +    + V     +YEVVRT+LLPG LKT Q NR++ VKDG+RLFEISDVV++D + DTGARN RRL A Y G TAGFEI+HGLVDR+M L+QV P+  Y+G+     AGG     PWRE + Y + PVD  TFFPGRCADV+L           +G +E+RLGSFG+LHPEVL AY++ + P+S +E+DLEPLM
Sbjct:    1 MPTVGVVRDDLFKALGKEYTEEEFDELCFEFGIELDEVTTEPAEAPGQEP-------------TIIYKLDIPANRYDLLCLEGLARALNIFLGRASPPDFRLVEPASGQ--RQTITVKPSTAQIRPYVVCAVLRGVTFDARTYKSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPQDIEFVPLVPCDRGAFKAKALLDLYNTDVAVKHLKPYTGIIYDSPVYPVVLDARRTVCSLPPVINGYHSRIQQTTRNVFIECTATDLTKANIVLDTVVAMFSQLCADPFTAEPVDVVYE-ATGNTATTPLLSSRTLEVAMADIRGILGVDMAPEEACRLCAKMQLGPATVT-----QGGAAIAVTAPPTRSDVLHAVDVVEDVAIAHGYNALPLRAPRAHTVGAPQPLAAVCDLLRAEVARAGYAELLTHGLCDRRDLVAVARCEGGEEGPQAAALLGQAVALGDADYEVVRTTLLPGVLKTLQHNRSLSVKDGLRLFEISDVVLQDPTTDTGARNVRRLCALYTGNTAGFEIVHGLVDRVMQLLQVVPAASYAGASVSKAAGGAIEGGPWREGLEYFVRPVDNRTFFPGRCADVVLRRSGXXXXXXXSGAEEVRLGSFGVLHPEVLHAYEVGEYPASVLEMDLEPLM 632          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: W7TXC3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXC3_9STRA)

HSP 1 Score: 717 bits (1850), Expect = 9.580e-248
Identity = 372/639 (58.22%), Postives = 463/639 (72.46%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGSDPRARAG-GPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPT+ + RDDLF ALG  YT  EF ++CF FGIELDE+T+E     K +   G+ G  G A   VVYK+D+PANRYD+LC+EGL RALR+FL  + +P +R VEP      R  M+V +  A +RP+V CA+LR +TF+   YKSF+DLQ+ LH+NICRRRTLVAIG HDL+T++GPFRY A  P+ I F PLT  D   FNAK LLD Y TD S KHL PYT IIYE+  YPV+ D+ G VLSLPPVING  SRI L+T +VFIECTATD TKANIVLDT+VTMFS++C   F+VEPVDV Y+     V+TTPLLSTR   A ++EI  ++G ++  E +C+LC KMQLGPA     AE +    + VTVPPTRSD+LH VDV+EDVAIA+G+N +P  +P TLTVG   P+N F DLLR+EI+RAGY E+LTHGLCSRAENF  LRR E   VSLSNP + EYE+VRT+LLPG LK  Q NRA  VKDG+R FEISDVV+RDD  D GA+N RRLVA+     AGFE IHGLVDR+M LVQ+ P+E Y+G+  R        ++ ++Y I P D P +FPGRCADV+L+    E+G  +  K +++G+FG+LHPEVLKAYD+  P+S +EIDLEPL+
Sbjct:    1 MPTISLVRDDLFNALGKSYTDDEFQDVCFAFGIELDEITTEGELASKDAGSKGKCGPDGGA---VVYKVDVPANRYDILCMEGLTRALRIFLELDKAPSYRKVEPTDNGGTRTVMSVEASTASVRPFVACAILRDMTFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLRGPFRYTAADPASIQFSPLTSDDGRVFNAKELLDFYRTDESAKHLSPYTDIIYEAPRYPVLYDSRGTVLSLPPVINGRHSRITLQTRNVFIECTATDKTKANIVLDTVVTMFSQHCARPFTVEPVDVVYEGPELSVETTPLLSTRKVAAKMSEIEGLVGRDLGPELVCQLCNKMQLGPASY--HAETDT---VVVTVPPTRSDVLHAVDVIEDVAIAFGYNNLPIKVPGTLTVGAPLPINAFSDLLRDEIARAGYLEVLTHGLCSRAENFAKLRRPETKAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAAQVKDGLRFFEISDVVLRDDHTDVGAKNIRRLVASSTSMVAGFESIHGLVDRVMLLVQIGPTEAYAGNSMRGEERMAVLKDKIQYYIVPSDDPAYFPGRCADVILV----EDGKKS--KPLKVGTFGVLHPEVLKAYDIPFPTSMLEIDLEPLI 625          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: A0A7S1U5G5_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5G5_9STRA)

HSP 1 Score: 687 bits (1772), Expect = 9.530e-235
Identity = 379/680 (55.74%), Postives = 470/680 (69.12%), Query Frame = 2
Query:   56 TSMPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMAEGEG-GKG--IKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEEPC----VSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDT------------GARNSRRLVATYMGPT-AGFEIIHGLVDRIMSLVQVA-----------------PSEEYSGSDPRARAGGPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRD----PSSAVEIDLEPL 1972
            ++MPT+GV RDDLFEALG  YTQ EF+ LCFEFG+ELD+VTSEA +  K +    +   A   S +V+YKID+PANRYDLLCIEG+ARALR+FLG + +P +  +EPAAGA AR  MTV +  A +RP+VVCAVLRGVTF  K Y+SF++LQDKLHQNICRRRTLVAIG HDL T+  PFRY A+PP+DI+FVPLT  ++ +F+ KALLD Y TD   KHL PY  IIY+   YPVI DA   VLSLPP+ING  SRIRL+T DVFIECTATD TKANIVLDT+VTMFSE+C   FSVE VDV Y+ E G V TTP ++ R+++A+VA++ S++G++I  E +C LC KMQLGPA  V      G GKG  I+VTVPPTR DI+H VDV+ED+ +AYGFN I  T+P TLTVG  QPLN+F DLLR+EI+RAG++E LTHGLCS  EN++MLRR  E      VSLSNP + EYE+VRTSLLPG LKT Q NR   +   +++FEISDVV RD    T            GARN+RRL A Y     +GFE+IHGLV R+M +VQ+                    +++S   P  +   P R  + YR+   D P FFPGRCA+V L     ++   A   E R+G FG++HPEVL  Y L      P+S +E+DLEPL
Sbjct:   32 SAMPTVGVVRDDLFEALGRTYTQDEFELLCFEFGVELDDVTSEAEQARKMN----KDSAAADLSEEVIYKIDVPANRYDLLCIEGIARALRIFLGTQPAPTYEVLEPAAGAGARLAMTVEAPTAGVRPHVVCAVLRGVTFTPKRYQSFIELQDKLHQNICRRRTLVAIGTHDLATLTPPFRYRALPPTDINFVPLT-EEERSFDGKALLDHYKTDGQCKHLAPYVDIIYDEPNYPVIYDAEDRVLSLPPIINGRHSRIRLDTRDVFIECTATDYTKANIVLDTVVTMFSEHCDKPFSVEKVDVIYEAEGGRVDTTPKMTVRSDQAAVADVNSLVGIDITPERMCELCDKMQLGPATHVPEGPDSGPGKGGLIRVTVPPTRHDIMHSVDVIEDIGVAYGFNNIVKTVPETLTVGAPQPLNHFCDLLRDEIARAGFSETLTHGLCSIRENYEMLRRDSEAAATEYVSLSNPANEEYEIVRTSLLPGMLKTLQANRGTALSVPLKIFEISDVVFRDLEFTTPSVSGPYDLGVVGARNARRLSALYASMQGSGFEVIHGLVTRVMQVVQLPHLLQVRESAKTTTDGEEEDKKWSMIPPGGQTLAP-RPGLAYRVAAGDDPCFFPGRCAEVFLCRLGADD---AVLSEERVGLFGVVHPEVLANYGLVKIHAYPTSVLELDLEPL 702          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: A0A7S4IXX5_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IXX5_9STRA)

HSP 1 Score: 682 bits (1760), Expect = 1.060e-233
Identity = 358/662 (54.08%), Postives = 459/662 (69.34%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQG-TFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKT---TPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDT-----GARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGS-----DPRARAGGPWRENMRYRIEPVDRP----------TFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPTL V RDDLF ALG  YT  EFDELCFEFG+ELDE+TSE  +  K              S  VVYKID+PANRYDLLCIEGL RA++VFLG   SP +    PA  +   + + + S  + +RPYVVCA+LR +TFNA+ Y+SF++LQD+LH+N+CR RTLVAIG HD++ V GP++YDA  P DI+FVPLT  D G +F  +ALL+ Y  DPS KHLKPY PII +S +YPV+ D N  VLSLPP+ING  S+I ++T +VF+ECTATDLTKANIVLDT+V MFSEYC D FSVEPV V+Y DESG   +   TP +  R E+A V  + S++G++   E +  LC K+QLGPA +V + E  G + ++VTVPPTRSDILHPVD+ EDV IAYG+N I   +P T TVGG QPLN  GDLLR+EI RAGYTE+LTHGLCS  +NF  LRR     VSL NP +VEY+VVRT+LLPG LKT Q N++    +G ++FEISDVV+ DD         GARN RRL A Y GPT+GFE++HGLVDR+M+L +VAP   Y+ +     + + R     +E   Y I P+             T+FPGR A++LL  K   +GG+   K++R+G+FG++HPEVL+ +D++ P+S +E+DLE LM
Sbjct:    1 MPTLPVQRDDLFAALGRTYTDDEFDELCFEFGVELDEITSEREDALKSDTVKLSREEISKLSDSVVYKIDVPANRYDLLCIEGLTRAIKVFLGDMHSPTYNVKAPAEPSDVNKMVVMESNTSTVRPYVVCAILRDITFNARRYQSFIELQDQLHRNLCRNRTLVAIGTHDMDAVAGPWKYDARNPDDIEFVPLTHDDSGASFTGRALLEHYEKDPSCKHLKPYVPIIKDSPLYPVVLDGNEVVLSLPPIINGARSKISVDTRNVFVECTATDLTKANIVLDTVVAMFSEYCADPFSVEPVTVSYVDESGTETSSYVTPRMYARRERAGVDFVNSLVGIDENPERMIELCDKLQLGPAALV-LDEDTGKRMLEVTVPPTRSDILHPVDIAEDVGIAYGYNNIVKRVPVTSTVGGEQPLNKLGDLLRDEIGRAGYTEVLTHGLCSIRDNFTALRRDVAAAVSLLNPANVEYQVVRTTLLPGLLKTLQHNKSASFANGFKIFEISDVVLPDDGYTVTETAVGARNVRRLAAIYAGPTSGFEVVHGLVDRVMTLTEVAPERAYASNSGKTEEEKFRVS---KEGWEYTIRPLSEAEEGERGGVAGTYFPGRAAEILL-TKPGSDGGTT--KKVRIGTFGIIHPEVLQNFDVQYPASCLELDLEQLM 655          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: M4BKQ1_HYAAE (Phenylalanine--tRNA ligase n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKQ1_HYAAE)

HSP 1 Score: 671 bits (1730), Expect = 8.430e-230
Identity = 361/647 (55.80%), Postives = 452/647 (69.86%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDV-KTTPLLSTRTEKASVAEICSII-----GVEIEEEEICRLCTKMQLGPAEVVEMAEGEG-GKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGSDPRARAGGPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPT+GV RD+LF A+G  YT +EFD LCFEFGIELD++TSE    +++ QG  +     A S  V+YKID+PANRYDLLC+EG+ARALRVFL KE  PVF     A GA    ++ V S    +RPYVV AVLR V F  K Y SF+DLQDKLHQNICRRRTLVAIG HDL+TV+GPF Y A+PP++I F PL  + +  F A+ LLD Y TDP VKH+KPYT IIY+S VYPVI D NG VLSLPPVING  S+I L T +VFIECTATD+TKAN+VL+ MV MFSEYC   F VEPV V Y+DES +  + TP LSTR+ + ++ ++ S++      +E++ + +C+LC KMQL        A+  G GK I   VP TRSDILHPVDV+ED+ IAYGFN IP ++P T T+G  QPLN  GDLLR+EISRAGY E+LTH LCS  ENF+ L R+++    V LSNP  +E+EVVRTS+LPG LKT Q N+AM +K+G++LFE+SDVVV D+  D GA+N RR+ A Y GPT GFE+IHGLVDRIM L+ +    E +                 Y I P +  T+FPGRCA V+L  +D E         +RLG+FG+LHP VLK +DL +P+S +E+DLEPL+
Sbjct:    1 MPTVGVKRDELFAAMGQTYTDEEFDVLCFEFGIELDDITSEKQLKQREQQGQDKD--HSAHSDAVLYKIDVPANRYDLLCVEGIARALRVFLEKERPPVFTLAPRAEGA---HELLVKSSTKLVRPYVVSAVLRDVQFTQKRYDSFIDLQDKLHQNICRRRTLVAIGTHDLDTVEGPFTYSALPPNEIKFKPLAQNKE--FEARELLDFYRTDPDVKHIKPYTDIIYDSSVYPVITDKNGVVLSLPPVINGEHSKISLNTKNVFIECTATDMTKANVVLNAMVAMFSEYCAKPFKVEPVRVVYEDESVNASEMTPDLSTRSVEVAIKDVYSMLFGKGEPIELDIDRMCKLCDKMQLN-------AKPSGNGKTIVAEVPITRSDILHPVDVIEDIGIAYGFNNIPLSIPQTQTIGMAQPLNKLGDLLRDEISRAGYIELLTHALCSHKENFEYLNREDDGHSAVVLSNPATIEFEVVRTSMLPGMLKTLQNNKAMSIKEGLKLFEVSDVVVIDNKTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLLGIPFELEMAVGT-----------KEYYTITPAEERTYFPGRCAYVVLQKEDAEP--------LRLGAFGVLHPGVLKNFDLLNPTSVLEMDLEPLL 614          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: A0A8K1FBR6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBR6_PYTOL)

HSP 1 Score: 670 bits (1728), Expect = 1.810e-229
Identity = 355/645 (55.04%), Postives = 458/645 (71.01%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKTTPLLSTRTEKASVAEICSII-----GVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGSDPRARAGGPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPT+GV RD+LF A+G  YT +EFD LCFEFGIELD++TSE   L+++ QG  +   +   S +V+YKID+PANRYDLLC+EG+ARALR+FL KE  P ++ V PA GA   Q++TV      IRP+VV A+LR V F  + Y SF+DLQDKLHQNICRRRTLVAIG HDL+T++GPF Y+A+ P  I FVPL+ + +  F AK LLD Y T+  VKHLKPYT IIY+S VYPVI D NG VLSLPP+ING  S+I + T +VFIECTATD+TKA++VL+T++ MFSEYC + F+VEPV++ Y++++   + TP LS R+ + +V +I S++      V ++ E IC LC KMQL      +         I V VPPTRSDILHP+DVVEDV IAYGFN IP T+P+T+T+GG QPLN  GD LR+EISRAGY E+LTHGLCS  ENFK L R ++    V L+NP  +E+EVVRTS+LPG LKT Q N++M VKDG++LFEISDVVV D + D GARN RR+ A+Y G T GFE+IHGLVDRI  L+ +    E    +P      P      Y IEP +  T+FPGR A+++L  KD +         ++LG++G+LHPEVL+ +DL  P+S VE+DLEPL+
Sbjct:    1 MPTVGVKRDELFAAMGQTYTDEEFDHLCFEFGIELDDITSEKA-LKQREQG--KTDKSEELSDEVLYKIDVPANRYDLLCVEGIARALRIFLQKEKPPQYKLVPPATGAP--QQVTVKPSTKSIRPFVVSAILRNVKFTQERYDSFIDLQDKLHQNICRRRTLVAIGTHDLDTIEGPFTYNALSPDQIKFVPLSQTRE--FQAKELLDFYRTNVEVKHLKPYTDIIYDSPVYPVITDKNGVVLSLPPIINGEHSKITINTKNVFIECTATDITKAHVVLNTVIAMFSEYCAEPFTVEPVNIVYEEDASQNEQTPNLSNRSVEVNVKDIFSMLFGKREPVNLDIERICELCDKMQLAAKPTADQQR------IVVDVPPTRSDILHPIDVVEDVGIAYGFNNIPLTIPSTMTIGGAQPLNKLGDHLRDEISRAGYIELLTHGLCSHDENFKFLNRTDDGASAVVLANPATIEFEVVRTSMLPGVLKTIQNNKSMSVKDGLKLFEISDVVVLDKTTDVGARNVRRICASYTGHTDGFEVIHGLVDRIFQLLGIRGLVE----NPEVVKTLP----EYYAIEPSNDNTYFPGRSANIVLYRKDQQP--------LKLGTYGVLHPEVLRNFDLLHPTSVVEMDLEPLV 616          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: A0A6G0WW67_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW67_9STRA)

HSP 1 Score: 668 bits (1723), Expect = 8.040e-229
Identity = 364/646 (56.35%), Postives = 454/646 (70.28%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTD-VVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKTTPLLSTRTEKASVAEICSII-----GVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQE--EPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGSDPRARAGGPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPT+GV RD+LF A+G  +T  EFD LCFEFGIELD++TSE  +++++ QG      AG  ++D V+YKID+PANRYDLLC+EG+A ALRVF+ KE  PVF+ V P     A  ++TV  G  KIRPYVV  VLRGVTFN   Y+SF+DLQDKLHQNICRRRTLVAIG HDL+T++GPF Y+A  PSDI FVPL+ S +  FNAK LLD Y T P  KHLKPYT IIY+   YP+I D N  VLSLPP+IN   S+I+L T +VFIECTATD+TK NIVL+T++ MFS+YC   F+VEPV++TY+++ G  +TTP LS R   A V +I S++      ++++ + IC LCTKMQL  + +      E    IKV VPPTR+DILH VDV+EDV IAYGFN IP T P TLTVGG QPLN  GD LR+EISRAGY E+LTHGLCS  ENFK L+R++  E  V LSNP  +E+EVVRT+++PG LKT Q N+ M  KDG++LFE+SDVVV D + D GA+N RRL A Y G T GFEIIHGLVDR+M L+ V    E              R+N  Y I P   PTFF GRCAD++           AG  + +LG+FG+LHP+VL  Y+L  P+S VE+D+EPL+
Sbjct:    1 MPTVGVKRDELFAAIGQTFTDDEFDHLCFEFGIELDDITSER-QIKQKEQGVN----AGIDASDAVIYKIDVPANRYDLLCVEGIACALRVFMKKELPPVFKIVAP----PAPHRITVKKGLEKIRPYVVSCVLRGVTFNQARYESFIDLQDKLHQNICRRRTLVAIGTHDLDTIEGPFTYEAQTPSDIKFVPLSQSRK--FNAKELLDHYRTSPDAKHLKPYTDIIYDFPAYPIIYDKNRTVLSLPPIINSEHSKIKLTTRNVFIECTATDITKGNIVLNTVIAMFSQYCDAPFTVEPVEITYEND-GHHETTPDLSNREVVAKVKDIHSMLFGKREPIDLDVQRICELCTKMQLDASYL------EAEHSIKVQVPPTRADILHAVDVMEDVGIAYGFNNIPITYPPTLTVGGAQPLNKLGDQLRDEISRAGYIELLTHGLCSHDENFKFLQRKDDGESAVVLSNPATIEFEVVRTTMIPGVLKTVQNNKGMSFKDGLKLFEVSDVVVLDKASDVGAKNIRRLCALYTGQTDGFEIIHGLVDRVMQLIGVKCILEEDHD----------RDNY-YAIVPSADPTFFEGRCADIVWT--------RAGQADTKLGTFGVLHPQVLNNYELLYPASVVEMDIEPLV 609          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: K3WGC6_GLOUD (Phenylalanine--tRNA ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGC6_GLOUD)

HSP 1 Score: 667 bits (1720), Expect = 2.910e-228
Identity = 361/645 (55.97%), Postives = 456/645 (70.70%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVKTTPLLSTRTEKASVAEICSII-----GVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEYSGSDPRARAGGPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPT+GV RD+LF A+G  YT  EFD LCFEFGIELD++TSE  +L+++ QG  +A      S  V+YKID+PANRYDLLC+EG+ARALRVFL KE  PV++ V  A G +   ++TV S    IRP+VV A+LR V F  + Y SF+DLQDKLHQNICRRRTLVAIG HDL+T++GPF YDA PP++I F PL  S +  F+AK LLD Y T+   KHLKPYT IIY+S VYPVI D NG VLSLPP+ING  S+I L T +VFIECTATD+TK  IVL+TM+ MFSEYC + F++EPV++ Y+DE+ + + TP LS RT +A+V +I S++      + ++ + IC LC KMQL             G+ I V VPPTRSDILH VDV+EDV IAYGFN IP TLP+T T+G  QPLN  GD LR+EISRAGY E+LTHGLCS  ENFK L R+++    V LSNP  +E+EVVRTS+LPG LKT Q N++M VK+G++LFEISDVVV D++ D GA+N RR+ A+Y G T GFE+IHGLVDRIM L+ +    E    DP A A  P      Y I      TFFPGRCA++ L  +        G   ++LG+FG+LHP+VL+ ++L  P+S VE+DLEPL+
Sbjct:    1 MPTVGVKRDELFAAMGQTYTDDEFDHLCFEFGIELDDITSEK-QLKQREQGSSKA--HDDISDAVLYKIDVPANRYDLLCVEGIARALRVFLQKERPPVYKLVPRADGPA--HEITVKSNTKLIRPFVVSAILRNVQFTQERYDSFIDLQDKLHQNICRRRTLVAIGTHDLDTIEGPFTYDARPPTEIKFQPL--SQKREFDAKELLDFYRTNVDSKHLKPYTDIIYDSPVYPVITDKNGVVLSLPPIINGEHSKISLNTKNVFIECTATDITKGKIVLNTMIAMFSEYCAEPFTIEPVNIVYEDEAEENEMTPDLSNRTVEANVKDIYSMLFGKKEPINLDLKRICELCDKMQLSAK------ASSDGQRIVVEVPPTRSDILHAVDVIEDVGIAYGFNNIPLTLPSTQTIGQPQPLNKLGDHLRDEISRAGYIELLTHGLCSHDENFKFLNREDDGTTAVVLSNPATIEFEVVRTSMLPGVLKTIQNNKSMSVKEGLKLFEISDVVVLDNNSDVGAKNVRRICASYTGHTDGFEVIHGLVDRIMQLMGIPNLLE----DPSAAATLP----QYYAIAGSADNTFFPGRCANITLFKQ--------GEAPLKLGTFGVLHPDVLRNFELLHPTSIVEMDLEPLV 616          
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Match: A0A7S2H2G7_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H2G7_9STRA)

HSP 1 Score: 667 bits (1721), Expect = 5.660e-228
Identity = 354/663 (53.39%), Postives = 457/663 (68.93%), Query Frame = 2
Query:   62 MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQGGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVFRTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVDVTYDDESGDVK---TTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQLGPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTTLPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQE--EPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDS-----CDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEY----------SGSDPRARAGGPWRENMRYRIEPVDRP-----TFFPGRCADVLLMVKDTEEGGSAGWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM 1975
            MPT+ V RD+LF  L H YT +EFDELCFEFG+ELDE+TSE  E  K S          + S +V+YKID+PANRYDLLCIEG++RAL+VFLG+ D+P +    P + A     M      + IRP+VVCA+LR VTF  + Y SF+DLQD+LH+N+CR+R+LVAIG HDL++V+GPF YDA  P +I+FVPL P    TFN+KALL+LY TD   K LKPY P+I +S +YPV+ D+N  V+SLPP+ING  S+I L+T  VFIECTATDLTKANIVLDTMVTMF++YC   + +EPV VTY + +G++    TTP LSTR E A V+ + S+IG+E+E  ++  LC K+QLGPA+++     +    ++VTVPPTRSDILHPVD+ ED+AIAYG+N I   +P T TVGG QPLN   DLLR+EI RAGYTE+LTHGLCS  +NF  L R+E  E  VSLSNP ++EYEVVRT+LLPG +KT Q NR+    +G++LFEISDVV+ D          GARN RR+ A Y GPT+GFEI+HGLVDRIM+L +VAP  EY           G + + R     RE   Y +  ++       T+FPGR A V++     E        E+ LG+FG+LHP+VLK +D+  P+S VE+DL PL+
Sbjct:    1 MPTVAVKRDELFSHLNHTYTDEEFDELCFEFGVELDEITSEREEATKSSTVKLSKEKLASLSEEVIYKIDVPANRYDLLCIEGISRALKVFLGELDAPDYSLSSPESPAECTVLM---DNTSTIRPFVVCAILRDVTFTPERYASFLDLQDQLHRNLCRQRSLVAIGTHDLDSVQGPFTYDARKPEEINFVPLKPDGSPTFNSKALLELYETDAECKSLKPYVPLIKDSPLYPVVLDSNDVVMSLPPIINGDHSKITLDTKQVFIECTATDLTKANIVLDTMVTMFAQYCAKPYEIEPVKVTYKNANGEITNSYTTPTLSTRKETAQVSFVNSLIGIELEATKMLTLCNKLQLGPAQLL-----DSNTTLEVTVPPTRSDILHPVDIAEDIAIAYGYNNIVKRVPQTCTVGGEQPLNKLTDLLRDEIGRAGYTEVLTHGLCSLHDNFTALGREEKKEEAVSLSNPANIEYEVVRTTLLPGLMKTLQHNRSASFSNGMKLFEISDVVLADGKHAITETVVGARNVRRVCAIYAGPTSGFEIVHGLVDRIMTLTEVAPGGEYIKATQGAGGSMGEEEQFRVA---REGWEYEVRALEESRDEIGTYFPGRAAMVVVRNPGVEG-------EVVLGTFGILHPKVLKNFDVSYPASCVELDLSPLL 645          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig682.17768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA1_ECTSI0.000e+098.12Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A835YVN2_9STRA2.490e-26060.64Phenylalanine--tRNA ligase n=1 Tax=Tribonema minus... [more]
W7TXC3_9STRA9.580e-24858.22Phenylalanine--tRNA ligase n=2 Tax=Monodopsidaceae... [more]
A0A7S1U5G5_9STRA9.530e-23555.74Phenylalanine--tRNA ligase n=1 Tax=Phaeomonas parv... [more]
A0A7S4IXX5_9STRA1.060e-23354.08Phenylalanine--tRNA ligase n=1 Tax=Odontella aurit... [more]
M4BKQ1_HYAAE8.430e-23055.80Phenylalanine--tRNA ligase n=2 Tax=Hyaloperonospor... [more]
A0A8K1FBR6_PYTOL1.810e-22955.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WW67_9STRA8.040e-22956.35Phenylalanine--tRNA ligase n=1 Tax=Aphanomyces eut... [more]
K3WGC6_GLOUD2.910e-22855.97Phenylalanine--tRNA ligase n=1 Tax=Globisporangium... [more]
A0A7S2H2G7_9STRA5.660e-22853.39Phenylalanine--tRNA ligase n=1 Tax=Helicotheca tam... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig682contigEcto-sp13_S_contig682:2629..11757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1254.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LJA1
Model size2781
KEGG rclassRC00055,RC00523
KEGG koko:K01890
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons13
EggNOG free text desc.phenylalanine-tRNA ligase activity
EggNOG OGsCOG0072@1,KOG2472@2759
Ec32 ortholog descriptionDNA binding domain, putative
Ec32 orthologEc-02_005310.1
EC6.1.1.20
Cds size1917
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463937.1388142-UTR-Ecto-sp13_S_contig682:2628..34311681463937.1388142-UTR-Ecto-sp13_S_contig682:2628..3431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig682 2629..3431 -
1681463937.361298-UTR-Ecto-sp13_S_contig682:11696..117571681463937.361298-UTR-Ecto-sp13_S_contig682:11696..11757Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig682 11697..11757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463937.1749556-CDS-Ecto-sp13_S_contig682:3431..36001681463937.1749556-CDS-Ecto-sp13_S_contig682:3431..3600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 3432..3600 -
1681463937.1859944-CDS-Ecto-sp13_S_contig682:4152..42711681463937.1859944-CDS-Ecto-sp13_S_contig682:4152..4271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 4153..4271 -
1681463937.2017717-CDS-Ecto-sp13_S_contig682:4692..48601681463937.2017717-CDS-Ecto-sp13_S_contig682:4692..4860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 4693..4860 -
1681463937.2203856-CDS-Ecto-sp13_S_contig682:5305..54311681463937.2203856-CDS-Ecto-sp13_S_contig682:5305..5431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 5306..5431 -
1681463937.2411294-CDS-Ecto-sp13_S_contig682:5811..59591681463937.2411294-CDS-Ecto-sp13_S_contig682:5811..5959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 5812..5959 -
1681463937.2545564-CDS-Ecto-sp13_S_contig682:6420..66021681463937.2545564-CDS-Ecto-sp13_S_contig682:6420..6602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 6421..6602 -
1681463937.2714071-CDS-Ecto-sp13_S_contig682:7032..71731681463937.2714071-CDS-Ecto-sp13_S_contig682:7032..7173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 7033..7173 -
1681463937.281337-CDS-Ecto-sp13_S_contig682:7767..79411681463937.281337-CDS-Ecto-sp13_S_contig682:7767..7941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 7768..7941 -
1681463937.2956054-CDS-Ecto-sp13_S_contig682:8237..83331681463937.2956054-CDS-Ecto-sp13_S_contig682:8237..8333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 8238..8333 -
1681463937.3087313-CDS-Ecto-sp13_S_contig682:9076..92201681463937.3087313-CDS-Ecto-sp13_S_contig682:9076..9220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 9077..9220 -
1681463937.3192704-CDS-Ecto-sp13_S_contig682:9742..99151681463937.3192704-CDS-Ecto-sp13_S_contig682:9742..9915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 9743..9915 -
1681463937.3384712-CDS-Ecto-sp13_S_contig682:10800..109271681463937.3384712-CDS-Ecto-sp13_S_contig682:10800..10927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 10801..10927 -
1681463937.3494637-CDS-Ecto-sp13_S_contig682:11546..116961681463937.3494637-CDS-Ecto-sp13_S_contig682:11546..11696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig682 11547..11696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig682.17768.1prot_Ecto-sp13_S_contig682.17768.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig682 3432..11696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig682.17768.1

>prot_Ecto-sp13_S_contig682.17768.1 ID=prot_Ecto-sp13_S_contig682.17768.1|Name=mRNA_Ecto-sp13_S_contig682.17768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=639bp
MPTLGVNRDDLFEALGHVYTQKEFDELCFEFGIELDEVTSEAIELEKQSQ
GGGRAGGAGAASTDVVYKIDIPANRYDLLCIEGLARALRVFLGKEDSPVF
RTVEPAAGASARQKMTVGSGAAKIRPYVVCAVLRGVTFNAKSYKSFMDLQ
DKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGT
FNAKALLDLYNTDPSVKHLKPYTPIIYESEVYPVIKDANGDVLSLPPVIN
GHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSEYCGDKFSVEPVD
VTYDDESGDVKTTPLLSTRTEKASVAEICSIIGVEIEEEEICRLCTKMQL
GPAEVVEMAEGEGGKGIKVTVPPTRSDILHPVDVVEDVAIAYGFNKIPTT
LPATLTVGGHQPLNNFGDLLREEISRAGYTEMLTHGLCSRAENFKMLRRQ
EEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDV
VVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQVAPSEEY
SGSDPRARAGGPWRENMRYRIEPVDRPTFFPGRCADVLLMVKDTEEGGSA
GWKEIRLGSFGMLHPEVLKAYDLRDPSSAVEIDLEPLM*
back to top

mRNA from alignment at Ecto-sp13_S_contig682:2629..11757-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig682.17768.1 ID=mRNA_Ecto-sp13_S_contig682.17768.1|Name=mRNA_Ecto-sp13_S_contig682.17768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig682:2629..11757- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTGGGCCGCGCTTTGCCAGGCGGAGACAGGCTGATCGTGGGGATTGC TAGCCACCAGCATGCCTACGCTGGGAGTGAACAGAGATGACCTCTTCGAG GCCCTTGGTCACGTCTACACGCAGAAAGAGTTCGACGAGCTTTGCTTCGA GTTCGGCATCGAGCTGGACGAAGTGACCTCGGAAGCGATCGAATTGGAGA AGCAGTCTCAGGTGTGTACGCAAAGATGTGAGCAACAACATGTGTTCGTG CACGGAGAAGACGCAAGGCATCGTGTTTTCCGTGGAGGATGATGTGCAAC GAGCTGTATGGACGACCGACTGGCTGTATTTTGCCATTCCTCGGGCACTC CGGACCTGAGTCACGATTAGGTGATGCTGCGGTACTTCTGTAGATATAGT AGTACAATCGCGGAGGATTTCGCCCCTGTTGCCCTCTTCACCCGCCCCAC ACATGCCTTATCCCTCCACTAACCCTATCCAGCTAGGCTGTATCGGCTAG TTGTGTAATTTGGTTGGCCGTGTCTTCTTCAGCTTTTCACCGTCAAATGC GAAGCGGAACACGCGGTTTACTCCTCCTCATGTTTTATTGCGTGCATGCA GTAGTAGTGGTCCCTACAATATATATCGCGGTGTACAGGAGCAGTGATCT CACCGGGTTACATAAGGACCCGCGCATTGGGGGAAGGTCCATGAATCCAA AGTAGTGGAGCTAAAGTTGTTGTGCCAATGATTTTTCCCGCGATATGTGG GGAGCTCTACTGGTGTGTGCATATAACCCGCAAGAGATGGTGAACGCGTC CTTTTGATTCTTCTCTTGCTGACTATATAGGGTGGAGGTAGAGCAGGAGG GGCGGGAGCAGCCTCGACCGATGTAGTGTACAAGATCGACATCCCGGCCA ACCGGTACGATCTCCTGTGCATCGAAGGGCTTGCCAGGGCGCTAAGAGTC TTCTTGGGTGAGTGCGTGTTGTACAGCGATGTGAGTGTTGAGTACGATAT TGCTAGGGCATTCTCCGTCCTGCCGTCAGGCGTGTGCTCGGTCATCTCTC TCATTGGCACAGAGCGCCAGGCCGGTTGTAGTCTTCGCAGCCCCTATGGA AACCACCCTCAGCTTCTCTCTCTTCAAAGAGGTGGTAGGGGTTGAGTGAA TGTGTGCGGAGATGATGAAGTGAATGGCATGGAGTGAAATATCGTGTCGT AAGCGCTATCGGCCCACGGAAAGCAACATACTTTTTTTTGTCATACCCGC CTTACTGGCAGACCGCCATTCAATTTTCTCGCGCGATGAAGTTCACCATG TACATCGTCAGCGCACAATGCCTGGTGTTGGCGATCGTACTTGAAAGGCA CAGTAGCATGAGGGTGTTCAGGTTTGTTCTCGTTGGCAACAAGAAACACA GTCGAATGGGAGAGTTCGCGTCGGTTGCACAACCTGCAGAGCGGGGGTAC ACTGGGAACCCTGCGTGCAACTACGGAGGGCGCACGGGAGGTGGTGGTTG TTTTGTTTTTCTCCCTTTCGACCCTCTCAGACTCCTCCGATCCCAGACAA ACGTGTTTCGTCCCAAGCACGAGGTTTAGCCTCGTTCGTTTCATTGTTTT CGCCTTCTCTCGACCCTGGATTCGATTGTGGAGTGCCTGTGATTGTCGGC GTACACACTGCCGCCTTGTGATCGTGGGCCGAGTCCCTACAATGATCACA TCTTATCGCGAGCCCAGTCTCCCTAAAGATACACCGCAATACTGGTGTGC AATCGGTTTATCTGGCAACTCGCCCCCTGTTTATGAACCGACTGCAAGAG ACGAACAAACATGCTGTCGTTCCCTCATTTCCTACCCCGCAGGCAAGGAG GACTCGCCCGTCTTCCGCACCGTTGAGCCTGCCGCGGGCGCGAGCGCGCG CCAAAAGATGACCGTTGGGTCCGGGGCGGCCAAGATCCGTCCGTACGTTG TGTGCGCCGTGCTTCGAGGGGTGACTTTCAACGCAAAGAGCTACAAGAGC TTCATGGATTTGCAGGTTTGTGTCCGTTGGTGTCTCTTTTTGTAGCGTTT CGTGGCTTTCGCACGCACTGGTGTAGGTTGTTCACCTGGGAGGTTCTGAT GTCGCTGGTGCTGCTCGTTGTTTGGTTGTTCAACGTGTCTCTGTTTGGCT CCCGTAGCTGAAAAGATTGGCCTCTGTGTTTTTCACAGATAACATCTCCG GGAATTCTTTGCCGTGTAAATACATCGAGGAATTTCTCTTCTGCACCTTG TTGTATACTGCGCGAGTGATCATGCCGCTAAGTCGGACACGTCGAGTTCC TTCTTTACCAGCGCGTGGTGGCGTCTACATCCATGGTTCCCGGTACCTGC TCTTTCCGTTTACTTCGTTGCCATGACCTTCCATGTGAAGTTCGGTAGAT GCGTTACGTTCTCACTCAGCTTTCGTAGCAATTCGTTTAGCTTCTGCTGT TACTTGTTATTGTTCTCACTGGAACGGTTTTTGTGGCAAAACTTTTTTGT CGTGTCGGTGTTTGTGTCCTTTCGATATCGGACGCAGGACAAGCTGCACC AAAACATATGCCGACGCCGCACCCTCGTCGCTATCGGAGCGCACGACCTC AACACGGTCAAGGGGCCTTTCCGCTACGACGCCGTGCCTCCTTCGGACAT CGACTTCGTGCCGCTTACGCCCAGCGACCAGGTGCTGTTGGTAGCGGTAG TTGTGCTGATTCTGGTGGTGAGAGTATTGGCTGCACGCTGTACAGCGCCC CAGGATTGGTAGAGTATTGTTGCTGACGGTAGCGCACCGTAGTGTAGAAA TTTTGCGAAACCTGCAGTTCAGGGAATGGACAACACGTCTTTTCAACCCA TGTACCTAAGCTTGAGGCGAGGCGAGGTGTGACGAAAGATTTTCGTGAAA TCAATCATAGGTGTATGCCTTGACGATCTTTTGGACTGAAAAAAAATGGT CAAACCGGAAGAATGCTGGTGGTTGCACGGACGTGCGATCGACAGCCGAA TATCCACAACCATTAGATAGTGCTGTCGAAACCTGATCGACCCGCGCAAG GCAAGAAAGGTCTCGACGACATGTCTCTAAAACCACCCTTTGCGGCGTCG ACAACCTCTTGGTTGTGCAGAAAATCGACCGTTATAGTCCATCACACACG TGTGCGTTCGCTCGCACCGGCACAATCAGTGCAACCGTGTCCGACCATTC AAGCTTATAAACATCTTGGCGAGGAGTGCTCATCACGATAACAACATACC GGCTCATAAATCCAACGTCAATGCCCCTCCACTTTCCCTTCTCTCCCTTA CCCTGGCCGCCACTATTCCTATTACNNNNNNNNNNAAAAACATTTGGGGG GGGCGGCCTACCCACAAAAAAAACACCCCCCCCCCCCCCCCCCCCCCCCC CCCCTGCGCGTGCCCTTTTGACAGGGGACGTTCAACGCTAAGGCGCTGTT GGACCTATACAACACGGACCCTTCCGTGAAGCACCTCAAGCCCTACACAC CCATCATCTACGAAAGCGAGGTAGACGCGATGCGATGCAGCTACTACTAT TATTCAGCCAGTCCGCGGGTCCCCTGGGCCGTGTTGTTGTTGTTGGTAGT TTCCCCTGTAGCTGGTCTGTAAGGGGACCCGGGCGGAGATGTTGCGTGAG TGCACGTTAGCCAAGGAGAAATCTTTATGGAAAAAGAGACCTTAATGAAA CAAACCACACCGCATGTAGGTTTTGATTTTATTCTACGGTTGCGTGGGAG GTGGTGAACCAGCGCTCGTCTCGGACATCCCTACGAAAGTTTTGTGCCGT CGGGTTTTTTTTTCAGGTGTACCCTGTCATCAAGGACGCCAACGGGGACG TCTTGTCGCTGCCCCCCGTCATCAACGGCCACCTGAGCCGCATCCGGCTG GAGACGACGGACGTGTTCATCGAGTGCACCGCCACGGACCTTACCAAGGC CAACATCGTCCTCGACACCATGGTTACGATGTTCAGTGAGGTGAGCAACC TGTAATTTAAACGCTCCGCCTTGCGTGTGTTCCTCGAAGGACTTTTTTTT GTGTGTGCGCGAGACGTACGTGGGTGAGGGTTCAGTGAGGCACGTCACCC AAAAACACCAGCGCTCTGTCTTGCGTGTTCCTCTCGGGAGTTTTTCTTTC GTGTGTGCGAGACGCACGTGCGTAACGGTTCAGTGAGACAAGTCACCTCT TGTGTATGCGCTCCGTCTTGCATATGTTCCTCATAGTTTTTTTTTGCGTG TGTGCAAGACGCAGTGGGTAAGGTTCACGGGGGCCTTACACGCGGATCCC TCTGCGTGATGAAAATTCACATGCGTTTGGGATGGACAGCCCCCGTGTTG GGGGCAGATTGTCTTCAATGATCTTGGTGCGGAGTGACTCTGGAGAGCTA ATGATAGACAGGCGATGTGTAAAGATGAGGAGGAATTGAAAGTATTCTGA GCTGTTTCGCGTACGAACACAGATCGCATCACGCAGCCCGTTAAAAAACA AACCGTACAAAACTCTCATCGTCTGGTTACCTGTGTTCGGCCCTACTAAC AGTTTTTTTTCGTGCGTTGTTCCGAATTTCGCAGTACTGCGGCGACAAGT TTTCGGTGGAGCCCGTAGACGTTACGTACGACGACGAGAGCGGCGACGTG AAGACGACGCCCCTCCTTTCCACCCGGACCGAAAAGGCCTCGGTCGCGGA GATTTGCTCCATCATCGGCGTCGAGGTGAGAGTCTTGTTCCACCGCTATT TAGCTCTCTGTCCCCGGTAGGTATGTTACTGTAACAAGTTTCTGCATGTG AAGCAGTAGACGTGATCGGCCGCGTGCTAGTGGAGGGTGGGCGTGCGCGC TTACGGTTCGCGTTGGTTTTGCGAGGCAGCCTGCCTCTCCCTCTCACCCC CGCGAAACAAGCCGAAGTATTTAGATACCAGCGGTGGAAATCATGGGTCG GCAACCTCGAGTCTGGGAAGTAGTGTAGTTGGCGGCAGGTGATGGCGATG GCAAAACCAGCACGCCAGCCAGGCCAACGCAAACTCCACCGAAGTCCGGC AGCTACCTATTTACGCTTTACTACGACCTTAAACAAACGGCACGTGCTGT AGACGTGACCCGACCCGTAACTCTACCATCGCGGTAACGTCCGTTCGCTT GTCAGATCGAGGAAGAGGAGATCTGTCGGCTTTGCACCAAGATGCAGCTG GGGCCGGCGGAGGTAGTGGAGATGGCAGAGGGAGAGGGAGGGAAGGGGAT CAAGGTCACGGTGCCGCCGACCCGCAGCGACATCTTGCACCCGGTCGATG TCGTAGAGGACGTGGCCATCGCCTACGGTTTCAACAAGTGAGGCAGGCTT TCGCTTTCGTGTGACGGGGCTCGCCATTTTTTTTCGAGCGCGTGGGCAAA AGGGTCACGACGGGAACGCGGATTCGTCTTGGTGTCTTCTTGTTTAAAGT TCTTGTGCTCGCTGTTGTGCATGCAGAGTATTCTCTCTGAGTTTGCCTTT TAATTTTAATTTTGAAGATGGGTCTATTTGAAGCTGCTTGTAAGCACCAA GAAAAAGACAAGCTGGAATTGAACCATTTTTTGTACTCCCGCTGAGCGTC ATAAAAATTGAGCGGAAGCATTCCTGGACAAGGACATCAAGGTCTGGCGG CGGCTGCAACAACGACCATGCCGGCCGACACACAACAGTCACAACCAGGC GCGTCAGGCTTGCACTTGGGACTTGCTTTTCTAACCTTCGGCTGGTGCTG CCGATTCTGCTTTTGGTGGTGGTGGTAACGACCGTCTCGCTCGTTCAGGA TTCCGACAACGCTGCCCGCCACCCTCACGGTCGGGGGGCACCAGCCCCTG AACAACTTTGGAGACCTCCTGCGGGAAGAGATCTCCAGGGCCGGGTATAC GGAGATGCTGACGCACGGCCTTTGCTCAAGGGCGGAGAACTTCAAGGTGA GGCCATTTGTGTTCGATATGACCTCTTGAAAGGGCCACAAATAGGGCGGA TGTGACGGCATCTGTATTCGGGTTTGTTGAGCGTGTGGCGATTGTGAGTC GGTGTCGTTTTTCATCGATGTTTTTATCTGGGCTCCATTATGCTCGATGG TCCCGCGTGCGTAACACGTTCAACGCTGTCTGAGCTTCCAATTAAACGCT GGATGCTGAGTGCCCCCCCCCCCCACCACACCCCCCCCACCCCCCAACCC CCCTCACCCCCCCCACCCCCCCCCCAACCCCCCCCNNNNNNNNNNGTTGG TTTTCCCCCCCTCTCAAAAGCCCTGGGGGGGGGGCCCCCCCCCCCCCCCC CCCCCTCCCCCGTTTTCGTTCGGTAGATGCTTCGGCGCCAAGAGGAGCCG TGCGTGTCCCTGTCCAACCCCAAGCACGTGGAGTATGAGGTTGTTAGGAC CAGCCTGCTCCCGGGAGCTTTGAAGACGGCGCAGTTCAACCGCGCGATGC CGGTGCGTTGTTTGCTGCTGCTGCTGCTGCTGCTGATGCTGCTGCTGCTG TGTTGGCGTCGCCAGTGGTGCTGTTGTGTCGCTTGCTGCGCGGTGGCGGT ACTGGTCGTCCATATCGCGGTTATTTCGACGTTGGCGCTACCGGCCCTTC TATGTTTGGCCGTTGATGGCGGCGGAATTGGTTTAGGCGCTATCGTGGTG TTCGGCATGATACCCCGCCCGACTTCCCAAATTCTTTTTTCTTTGCAACA TTGCATCACTCTTCCCTGTAGGCATTGCATCACTCCCCCCCCCCCCTATC TCGATTTGATGGCATTCCGTTTTGAGCACCGCATCCAGTGTTTGAATCCG CGTGCCCTCTTGATCTACGCAATATATTCCAGGCGTGCCTGTCTATGACG TCACTCCTCTGTTTCGCCTACCCCGGTGCTTGCTCCTAACCCCGAAGGTG AAGGACGGCGTGCGCCTCTTCGAGATCTCGGACGTGGTCGTACGCGACGA TTCCTGCGACACGGGGGCCAGAAACTCCCGCCGTCTGGTGGCCACCTACA TGGGGCCCACCGCGGGGTTCGAGATAATCCACGGTCTCGTCGACAGAATT ATGTCGCTCGTTCAGGTGGGACGGGATGGGATAGAATGGAATGGGACGGG GCTGGATGCACGTGCAAAGAGGGGCTCAAGTAAAGAAGTATGGCTTGTTT GGTATTTGATGAGTATGTATTTCGGACGGGGGTCGTTTTGAGATTATCCG TGGTCACCGCCACCTTTCACTTCCTGCGCATGGTGTGTGATGAGAAGAAA TGGTTATTAACACCGGAATACTGAAGTACGTACTCAGGGAAGAGTGTGTT GCAGGAAGTATGGTATGGACACCTTAAGACCGCACGTATGAAAGGACGGA TTCCATCGTACGTCTCATGTACGGACGAGCGTCCGTCGCATGTTATATTT TGGTATCTTCAGGTAACGTGACCTTGTGTCGCGTGATGTGCGTTACCGTT GTTAAAAGTCAACACTGTTCTTAATCATCGTTGCAGGTGGCGCCTTCGGA GGAATATTCCGGAAGCGATCCGCGTGCACGAGCGGGGGGTCCGTGGAGGG AGAACATGCGCTACCGCATCGAGCCGGTTGACCGCCCCACCTTCTTCCCG GGAAGGTACGATACACGTATACATGCCTCCTGATCATCGCTGAAACTTTT TCTGAGTTGTTCTGCGGCAACGCGCAGGCGGTAAATGCCATGATTGGCTG CTGTTTCACCGCGAACGACGTGTTGTCTTTCTCAATAAACTTGACACCTG TTGTCGGTCGTAAATGGTTTGAGACCTTTTGCTGTTGTGTGTGGTTGCAT GGCGCATGGCATGTGTTCGCAGCAACAGCGAGCGTCGTACCCCGGTTCTC TCTAGACGTTTCCCGGGCCACAAGTTGGATTGTCTAGACTTCCTCGCGCA AGAGAAACAAAGAGCAGCAGTAGTCGGTGACTGACCCGCATTCTCCACCT TTTATGCTAAAGTCCCTGGTTTTGACCCCACAAGTAATCTGAAACGGGCG CTACCATTGTAGTCTATACCCAGGTAGTCGGCATGCCGTTTTTCTTCCGC GGTAGCAACCACGGTGGTGACCGCCTGGCCTCGAGCTGGAGACTGTGCTT CTGTGGCCGCGACGTTTCGCTCTTGTACTCATCAATTTGGCGACTACTCA CATACAGGTGCGCGGACGTTTTGCTGATGGTGAAGGACACGGAGGAGGGG GGCTCCGCCGGGTGGAAGGAAATCAGGCTGGGGTCCTTCGGAATGCTACA CCCGGAGGTGCTCAAGGCCTACGACTTGCGGGATCCCAGCTCCGCCGTAG AGATTGATCTGGAGCCACTCATGTAACGGTTTGGCAACGGTGTGTGTCGC CAACGTTGTTCGGAGGGCATTCTCGATGTCAAGGAATAGGTGGTCTGCTT GCCGCGTGTACTGCTACTGCTGCCTCGAGTTAATGTGGCGTATGTTTCGT GATGGCCTTCTTCACTTCAAACCCATTGATGCGTTTTTGGGGGCAGTCGC TTTTTGTGGGAAGTTTTACAGTTGTTGTTCACCGATGCCCTGCATCGATT TCAGGTGTGAGGCATCGAATTACTCTCGTGGTTCATCTGTTCATCTTGCA AAGCTTTGTACGTGGGGAAAGCTTTGGCAGTCAACTGGCATTTTGTGCAT CGAGTTGCAATTGCTCTCGTAGAGAGATTTTGCAATCGAGATTTGAGGCT GCTCCATCATCGTTGCAACAACACTTCTCGTGTGTTGTTCACTGGGTGTG ATCGGTAAGGTTCGCTCGAACGGAACAGTATGGCTTACATTGGTTTTACA GCCTTCTGGGATTCAGCACGGCCGTTTACGCTTGGTTTTACAGCCTTCTG GGATTCAGCACGGCCGTTTACGCCGCTCCTGCCTTCGATACTGGTAGTTT CTCTGGTCCACTGCGGCCGGCAGTACATTTCCCCGCCTGTCGATATTAGC CCCTATACAGATAGAAACCCACATCAAGGTATACCTCTTTGGACCCCCGG GGTGAATTGGGTGGGCACTTCTTTCTCTTACCGAGAGAGGTTGGTCTCCA TGATGGGCCCGCATCGATGTAGACACAGGAAACATCGAGGTGCGCCACAT TTACTCAGCTTTTGTCTCTTTTTGGGCCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig682:2629..11757-

>mRNA_Ecto-sp13_S_contig682.17768.1 ID=mRNA_Ecto-sp13_S_contig682.17768.1|Name=mRNA_Ecto-sp13_S_contig682.17768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1917bp|location=Sequence derived from alignment at Ecto-sp13_S_contig682:2629..11757- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTACGCTGGGAGTGAACAGAGATGACCTCTTCGAGGCCCTTGGTCA
CGTCTACACGCAGAAAGAGTTCGACGAGCTTTGCTTCGAGTTCGGCATCG
AGCTGGACGAAGTGACCTCGGAAGCGATCGAATTGGAGAAGCAGTCTCAG
GGTGGAGGTAGAGCAGGAGGGGCGGGAGCAGCCTCGACCGATGTAGTGTA
CAAGATCGACATCCCGGCCAACCGGTACGATCTCCTGTGCATCGAAGGGC
TTGCCAGGGCGCTAAGAGTCTTCTTGGGCAAGGAGGACTCGCCCGTCTTC
CGCACCGTTGAGCCTGCCGCGGGCGCGAGCGCGCGCCAAAAGATGACCGT
TGGGTCCGGGGCGGCCAAGATCCGTCCGTACGTTGTGTGCGCCGTGCTTC
GAGGGGTGACTTTCAACGCAAAGAGCTACAAGAGCTTCATGGATTTGCAG
GACAAGCTGCACCAAAACATATGCCGACGCCGCACCCTCGTCGCTATCGG
AGCGCACGACCTCAACACGGTCAAGGGGCCTTTCCGCTACGACGCCGTGC
CTCCTTCGGACATCGACTTCGTGCCGCTTACGCCCAGCGACCAGGGGACG
TTCAACGCTAAGGCGCTGTTGGACCTATACAACACGGACCCTTCCGTGAA
GCACCTCAAGCCCTACACACCCATCATCTACGAAAGCGAGGTGTACCCTG
TCATCAAGGACGCCAACGGGGACGTCTTGTCGCTGCCCCCCGTCATCAAC
GGCCACCTGAGCCGCATCCGGCTGGAGACGACGGACGTGTTCATCGAGTG
CACCGCCACGGACCTTACCAAGGCCAACATCGTCCTCGACACCATGGTTA
CGATGTTCAGTGAGTACTGCGGCGACAAGTTTTCGGTGGAGCCCGTAGAC
GTTACGTACGACGACGAGAGCGGCGACGTGAAGACGACGCCCCTCCTTTC
CACCCGGACCGAAAAGGCCTCGGTCGCGGAGATTTGCTCCATCATCGGCG
TCGAGATCGAGGAAGAGGAGATCTGTCGGCTTTGCACCAAGATGCAGCTG
GGGCCGGCGGAGGTAGTGGAGATGGCAGAGGGAGAGGGAGGGAAGGGGAT
CAAGGTCACGGTGCCGCCGACCCGCAGCGACATCTTGCACCCGGTCGATG
TCGTAGAGGACGTGGCCATCGCCTACGGTTTCAACAAGATTCCGACAACG
CTGCCCGCCACCCTCACGGTCGGGGGGCACCAGCCCCTGAACAACTTTGG
AGACCTCCTGCGGGAAGAGATCTCCAGGGCCGGGTATACGGAGATGCTGA
CGCACGGCCTTTGCTCAAGGGCGGAGAACTTCAAGATGCTTCGGCGCCAA
GAGGAGCCGTGCGTGTCCCTGTCCAACCCCAAGCACGTGGAGTATGAGGT
TGTTAGGACCAGCCTGCTCCCGGGAGCTTTGAAGACGGCGCAGTTCAACC
GCGCGATGCCGGTGAAGGACGGCGTGCGCCTCTTCGAGATCTCGGACGTG
GTCGTACGCGACGATTCCTGCGACACGGGGGCCAGAAACTCCCGCCGTCT
GGTGGCCACCTACATGGGGCCCACCGCGGGGTTCGAGATAATCCACGGTC
TCGTCGACAGAATTATGTCGCTCGTTCAGGTGGCGCCTTCGGAGGAATAT
TCCGGAAGCGATCCGCGTGCACGAGCGGGGGGTCCGTGGAGGGAGAACAT
GCGCTACCGCATCGAGCCGGTTGACCGCCCCACCTTCTTCCCGGGAAGGT
GCGCGGACGTTTTGCTGATGGTGAAGGACACGGAGGAGGGGGGCTCCGCC
GGGTGGAAGGAAATCAGGCTGGGGTCCTTCGGAATGCTACACCCGGAGGT
GCTCAAGGCCTACGACTTGCGGGATCCCAGCTCCGCCGTAGAGATTGATC
TGGAGCCACTCATGTAA
back to top