mRNA_Ecto-sp13_S_contig6818.17761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6818.17761.1
Unique NamemRNA_Ecto-sp13_S_contig6818.17761.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6818.17761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6818contigEcto-sp13_S_contig6818:1833..2428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size597
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.6159678-UTR-Ecto-sp13_S_contig6818:1832..20891681463936.6159678-UTR-Ecto-sp13_S_contig6818:1832..2089Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6818 1833..2089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.625411-CDS-Ecto-sp13_S_contig6818:2089..24281681463936.625411-CDS-Ecto-sp13_S_contig6818:2089..2428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6818 2090..2428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6818.17761.1prot_Ecto-sp13_S_contig6818.17761.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6818 2090..2428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6818.17761.1

>prot_Ecto-sp13_S_contig6818.17761.1 ID=prot_Ecto-sp13_S_contig6818.17761.1|Name=mRNA_Ecto-sp13_S_contig6818.17761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MLLCVKHKRDAFLVSNTPPDRWLVVFVDPSSRYLQDLPNKKRSDRVQLVF
FLPQSPTSFIFVCSILLRLPVHLQPPSLVPPCVSLFQVLLGTSRDPLPHR
HRQLDVLRPRHGR
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mRNA from alignment at Ecto-sp13_S_contig6818:1833..2428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6818.17761.1 ID=mRNA_Ecto-sp13_S_contig6818.17761.1|Name=mRNA_Ecto-sp13_S_contig6818.17761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6818:1833..2428+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGCGGCTGCCCCGAGAAACTGCGTGTTTAACCACTAATAGTCTAGACT
TGCGATGTAAGGCGCGGTTCCGTGCTCCATGCGGCTGGATCCATATCATG
AAAGGAGGTCCGACCTCGTGAATCATTCGGCGACGGGGAAGGAACGCCTG
AGGATAAAAAAAAAACAAGCAGGAAGGAGAAAGGCCGATTGAATTGGGGC
CTGTTTGGTGCACAGGAAGCAGAGAGACAGAGAGTGCCTAGATGTTCTCT
CTCTCTTATGTTATTGTGTGTCAAACACAAGAGAGACGCATTTCTCGTTT
CGAACACACCGCCTGACCGTTGGCTTGTGGTTTTCGTGGATCCCTCTTCC
CGGTATCTTCAGGACCTCCCAAACAAAAAACGATCGGATCGCGTCCAACT
TGTTTTCTTTCTCCCCCAATCCCCCACTTCGTTTATTTTTGTGTGCTCGA
TTCTTCTGCGCTTGCCTGTCCACCTCCAACCGCCTTCGCTTGTTCCGCCC
TGTGTGTCTCTGTTTCAGGTACTCCTTGGTACTTCACGTGATCCTCTCCC
CCACCGACATCGGCAACTTGACGTACTACGTCCCCGTCATGGACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6818:1833..2428+

>mRNA_Ecto-sp13_S_contig6818.17761.1 ID=mRNA_Ecto-sp13_S_contig6818.17761.1|Name=mRNA_Ecto-sp13_S_contig6818.17761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6818:1833..2428+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTATTGTGTGTCAAACACAAGAGAGACGCATTTCTCGTTTCGAACAC
ACCGCCTGACCGTTGGCTTGTGGTTTTCGTGGATCCCTCTTCCCGGTATC
TTCAGGACCTCCCAAACAAAAAACGATCGGATCGCGTCCAACTTGTTTTC
TTTCTCCCCCAATCCCCCACTTCGTTTATTTTTGTGTGCTCGATTCTTCT
GCGCTTGCCTGTCCACCTCCAACCGCCTTCGCTTGTTCCGCCCTGTGTGT
CTCTGTTTCAGGTACTCCTTGGTACTTCACGTGATCCTCTCCCCCACCGA
CATCGGCAACTTGACGTACTACGTCCCCGTCATGGACGC
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