mRNA_Ecto-sp13_S_contig6817.17759.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6817.17759.1
Unique NamemRNA_Ecto-sp13_S_contig6817.17759.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: D8LHC7_ECTSI (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHC7_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.430e-44
Identity = 87/164 (53.05%), Postives = 89/164 (54.27%), Query Frame = 1
Query:    1 TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEVRLSST 492
            TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPS DPSQCGM              R      P +E                                                  GKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGE R + T
Sbjct:  100 TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSADPSQCGM--------------RVGGEIRPWEE--------------------------------------------------GKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEERNAVT 199          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: W7TMY5_9STRA (Aspartyl asparaginyl beta-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMY5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.510e-27
Identity = 72/182 (39.56%), Postives = 85/182 (46.70%), Query Frame = 1
Query:    1 TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASS-------PACSLPDSDFVSVIALVWSPACCASIK-------AGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEVRLSSTKRID 504
            TPFSFSFFSTLHG S IA HT P NLRLRCHLPL VP    ++     E++                          N            +S        P C+   ++F S+  L     C   I         GKCLVFDD YEHEVWN TE ERVLLL D WHP++A E R +  K  +
Sbjct:   88 TPFSFSFFSTLHGQSVIAPHTGPSNLRLRCHLPLIVPQGGKTEAN--EEKKXXXXXXXXXXXXXXXXXXXXXXXXXXNQGEGLQSAAGKDSSQSRPDPVPPGCASSSAEFDSLATLQARLPCGIRIGDQVREWVEGKCLVFDDAYEHEVWNLTEEERVLLLVDFWHPEIALEEREAIQKMFE 267          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: W7U6N4_9STRA (Aspartyl asparaginyl beta-hydroxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6N4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.910e-27
Identity = 72/182 (39.56%), Postives = 85/182 (46.70%), Query Frame = 1
Query:    1 TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASS-------PACSLPDSDFVSVIALVWSPACCASIK-------AGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEVRLSSTKRID 504
            TPFSFSFFSTLHG S IA HT P NLRLRCHLPL VP    ++     E++                          N            +S        P C+   ++F S+  L     C   I         GKCLVFDD YEHEVWN TE ERVLLL D WHP++A E R +  K  +
Sbjct:  142 TPFSFSFFSTLHGQSVIAPHTGPSNLRLRCHLPLIVPQGGKTEAN--EEKKXXXXXXXXXXXXXXXXXXXXXXXXXXNQGEGLQSAAGKDSSQSRPDPVPPGCASSSAEFDSLATLQARLPCGIRIGDQVREWVEGKCLVFDDAYEHEVWNLTEEERVLLLVDFWHPEIALEEREAIQKMFE 321          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: A0A7R9YNQ3_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNQ3_DIALT)

HSP 1 Score: 105 bits (261), Expect = 6.130e-26
Identity = 64/161 (39.75%), Postives = 70/161 (43.48%), Query Frame = 1
Query:    4 PFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEVRLS 486
            PF F+FFSTLH GS+I  HTAPCNLRLRCHLPL VP                 G  C    A   +P                                          W+         GK LVFDDCYEH VWN+T   RVLLLFDLWHPDLA   R +
Sbjct:   33 PFGFAFFSTLHPGSTIEPHTAPCNLRLRCHLPLRVPP----------------GDGCAMELAGARQP------------------------------------------WAE--------GKLLVFDDCYEHAVWNRTAEPRVLLLFDLWHPDLAESERAA 127          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: A0A7S2WWP7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWP7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.320e-25
Identity = 66/165 (40.00%), Postives = 77/165 (46.67%), Query Frame = 1
Query:    1 TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEVRLSSTK 495
            TPFSFSFFSTLH  SSIA H+APCNLRLR H+PLTVPS D ++CG              +R A    P                                          W        K G+ LVFDD YEHEVWN+T   RVLLL D+WHPDL    +++ T 
Sbjct:  180 TPFSFSFFSTLHSHSSIAPHSAPCNLRLRLHVPLTVPSEDANECG--------------FRVADHVAP------------------------------------------W--------KEGETLVFDDSYEHEVWNRTPVPRVLLLLDVWHPDLTLAEKIAITS 280          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: A0A8J5XA02_DIALT (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XA02_DIALT)

HSP 1 Score: 105 bits (261), Expect = 1.040e-24
Identity = 64/161 (39.75%), Postives = 70/161 (43.48%), Query Frame = 1
Query:    4 PFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEVRLS 486
            PF F+FFSTLH GS+I  HTAPCNLRLRCHLPL VP                 G  C    A   +P                                          W+         GK LVFDDCYEH VWN+T   RVLLLFDLWHPDLA   R +
Sbjct:  134 PFGFAFFSTLHPGSTIEPHTAPCNLRLRCHLPLRVPP----------------GDGCAMELAGARQP------------------------------------------WAE--------GKLLVFDDCYEHAVWNRTAEPRVLLLFDLWHPDLAESERAA 228          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: A0A836CPE8_9STRA (Putative aspartyl/Asparaginyl beta-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-22
Identity = 59/162 (36.42%), Postives = 74/162 (45.68%), Query Frame = 1
Query:    1 TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEVRLS 486
            TP S+SFFSTLH  S+IA HTA CNLRLRCH PL VPST+  +CG                             +RV    +                            W        + GK ++FDD YEHEVWN T  +RV+LLFD+WHP+L  + R +
Sbjct:  130 TPMSYSFFSTLHPRSAIAPHTAACNLRLRCHFPLIVPSTNADECG-----------------------------IRVGDEVR---------------------------AW--------EEGKAMLFDDAYEHEVWNHTGSQRVVLLFDIWHPELVPDERTA 227          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: A0A7S3XA75_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3XA75_9SPIT)

HSP 1 Score: 93.2 bits (230), Expect = 2.660e-20
Identity = 57/157 (36.31%), Postives = 66/157 (42.04%), Query Frame = 1
Query:    4 PFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGE 474
            PF+F+FFSTL GGS IA H +PCNLR+R HLPL VP  DP  CGM        G +  W                                                             GK L+FDD YEHEVWN  + +RV+LL D WHPDL  E
Sbjct:  115 PFAFTFFSTLRGGSHIAPHCSPCNLRIRVHLPLIVP--DPEACGMK-----VAGETRRWEE-----------------------------------------------------------GKALIFDDAYEHEVWNDGDSDRVILLIDTWHPDLTHE 205          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: A0A2R5GCZ4_9STRA (Aspartate beta-hydroxylase domain-containing protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCZ4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.210e-19
Identity = 54/155 (34.84%), Postives = 69/155 (44.52%), Query Frame = 1
Query:    4 PFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLA 468
            PF++ FFSTL  GS+I  H APCNLR+RCHL L+VPS +   CG                             +RV   A+                            W        + G  LVFDD +EHE WNKTE +RV+LL D+WHPD++
Sbjct:  119 PFAYCFFSTLKAGSAIQPHYAPCNLRVRCHLGLSVPSENVDDCG-----------------------------IRVADQAQ---------------------------AW--------QEGSALVFDDAFEHETWNKTEEDRVVLLLDVWHPDIS 209          
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Match: A0A6G0WYQ0_9STRA (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYQ0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.990e-17
Identity = 56/160 (35.00%), Postives = 69/160 (43.12%), Query Frame = 1
Query:    4 PFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREERCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPDSDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNK-TERERVLLLFDLWHPDLAGEVR 480
            PF+++FFSTL   SSI AH+APCN+RLRCH PL VP      CG+   +  +E     W                                                             GKCL+FDD Y+HEVW+   E ERV+LLFD+WHPDL  E R
Sbjct:  124 PFAYAFFSTLQPQSSIKAHSAPCNIRLRCHFPLWVPKG----CGIRVADETTE-----WEE-----------------------------------------------------------GKCLLFDDSYDHEVWHDGLEGERVVLLFDIWHPDLIPEER 215          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6817.17759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHC7_ECTSI5.430e-4453.05Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
W7TMY5_9STRA2.510e-2739.56Aspartyl asparaginyl beta-hydroxylase n=2 Tax=Mono... [more]
W7U6N4_9STRA6.910e-2739.56Aspartyl asparaginyl beta-hydroxylase n=1 Tax=Nann... [more]
A0A7R9YNQ3_DIALT6.130e-2639.75Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7S2WWP7_9STRA7.320e-2540.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5XA02_DIALT1.040e-2439.75Asp_Arg_Hydrox domain-containing protein n=2 Tax=D... [more]
A0A836CPE8_9STRA1.200e-2236.42Putative aspartyl/Asparaginyl beta-hydroxylase n=1... [more]
A0A7S3XA75_9SPIT2.660e-2036.31Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A2R5GCZ4_9STRA8.210e-1934.84Aspartate beta-hydroxylase domain-containing prote... [more]
A0A6G0WYQ0_9STRA1.990e-1735.00Asp_Arg_Hydrox domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6817contigEcto-sp13_S_contig6817:513..1457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score154.8
Seed ortholog evalue3.5e-35
Seed eggNOG ortholog2880.D8LHC7
Preferred nameASPHD2
Model size510
KEGG koko:K00476
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.peptide-aspartate beta-dioxygenase activity
EggNOG OGsCOG3555@1,KOG3696@2759
EC1.14.11.16
Cds size510
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463936.5716507-CDS-Ecto-sp13_S_contig6817:512..6511681463936.5716507-CDS-Ecto-sp13_S_contig6817:512..651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6817 513..651 +
1681463936.5823524-CDS-Ecto-sp13_S_contig6817:1015..11721681463936.5823524-CDS-Ecto-sp13_S_contig6817:1015..1172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6817 1016..1172 +
1681463936.5909307-CDS-Ecto-sp13_S_contig6817:1243..14571681463936.5909307-CDS-Ecto-sp13_S_contig6817:1243..1457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6817 1244..1457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6817.17759.1prot_Ecto-sp13_S_contig6817.17759.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6817 513..1457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6817.17759.1

>prot_Ecto-sp13_S_contig6817.17759.1 ID=prot_Ecto-sp13_S_contig6817.17759.1|Name=mRNA_Ecto-sp13_S_contig6817.17759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
TPFSFSFFSTLHGGSSIAAHTAPCNLRLRCHLPLTVPSTDPSQCGMLREE
RCSEGTSCTWRRAQLCEPCDEKQPLRVNVVAKYNGICPSSASSPACSLPD
SDFVSVIALVWSPACCASIKAGKCLVFDDCYEHEVWNKTERERVLLLFDL
WHPDLAGEVRLSSTKRIDC*
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mRNA from alignment at Ecto-sp13_S_contig6817:513..1457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6817.17759.1 ID=mRNA_Ecto-sp13_S_contig6817.17759.1|Name=mRNA_Ecto-sp13_S_contig6817.17759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6817:513..1457+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCGTTCTCGTTCTCGTTTTTTTCCACGCTGCACGGTGGCAGCTCCAT CGCCGCCCACACTGCCCCCTGCAACTTGCGCCTGCGGTGCCACTTGCCCC TCACCGTGCCGTCCACGGACCCGTCGCAGTGCGGGATGCGTGTGGCCGGA GAGACTCGACCGTGGGAAGAGGGTAAGGTTCTGAGGCTTGCCTCACAATT TTCTTTATTCAGCCTCGTGCTCGATTGCGAATAGCCGTATATACGAATAC GCAAGAAAACACCCCCCCCGGGTCCCATCTAAATACTGTTGACTTCTGAA ATGTAACATGTGTTGTATTGTGTGGTGTATCCCGTCGACCGATTAATAGT TCTGATGTTGGTTCTTTGTTTTGGGCTCATGTTGCCTGTATCATTATTGT CTACCGGGTGTGGTATTGTGTGGGGTTGGGTTGGTCGTTTACGGTTGTGA TGTCCTGTGTGGTGTTCGGTAGGTGGGATGGTCGTTGGTGTAATTCTGCC AAGTGCGGGAAGAACGCTGCTCGGAGGGAACGAGCTGTACTTGGCGCCGA GCGCAGCTTTGTGAACCGTGTGATGAAAAACAACCACTGCGCGTAAATGT CGTGGCGAAATACAACGGGATTTGCCCGAGCTCGGCTAGCAGCCCGGCGT GTTCGCTTCCGTCAGTGCACGCAGTTGACTTCCAGTCCTCCGTAATTTTA TCGCCGATGCACAACACCGATGTATTCCAAGGGATTCCGACTTTGTCTCC GTCATCGCTCTCGTTTGGTCGCCCGCGTGCTGCGCTTCCATAAAGGCAGG CAAGTGCTTAGTTTTTGATGACTGCTACGAGCATGAGGTGTGGAACAAGA CCGAGAGGGAGCGCGTGCTGCTGCTGTTCGATCTTTGGCACCCGGATCTA GCCGGGGAGGTGAGACTCTCTTCCACAAAGCGCATCGATTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6817:513..1457+

>mRNA_Ecto-sp13_S_contig6817.17759.1 ID=mRNA_Ecto-sp13_S_contig6817.17759.1|Name=mRNA_Ecto-sp13_S_contig6817.17759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6817:513..1457+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCGTTCTCGTTCTCGTTTTTTTCCACGCTGCACGGTGGCAGCTCCAT
CGCCGCCCACACTGCCCCCTGCAACTTGCGCCTGCGGTGCCACTTGCCCC
TCACCGTGCCGTCCACGGACCCGTCGCAGTGCGGGATGCTGCGGGAAGAA
CGCTGCTCGGAGGGAACGAGCTGTACTTGGCGCCGAGCGCAGCTTTGTGA
ACCGTGTGATGAAAAACAACCACTGCGCGTAAATGTCGTGGCGAAATACA
ACGGGATTTGCCCGAGCTCGGCTAGCAGCCCGGCGTGTTCGCTTCCGGAT
TCCGACTTTGTCTCCGTCATCGCTCTCGTTTGGTCGCCCGCGTGCTGCGC
TTCCATAAAGGCAGGCAAGTGCTTAGTTTTTGATGACTGCTACGAGCATG
AGGTGTGGAACAAGACCGAGAGGGAGCGCGTGCTGCTGCTGTTCGATCTT
TGGCACCCGGATCTAGCCGGGGAGGTGAGACTCTCTTCCACAAAGCGCAT
CGATTGTTGA
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