mRNA_Ecto-sp13_S_contig68030.17746.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68030.17746.1
Unique NamemRNA_Ecto-sp13_S_contig68030.17746.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68030.17746.1 vs. uniprot
Match: D7FQS6_ECTSI (Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS6_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 4.890e-61
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:    1 RPGAGAAMSSAAGSSPSTFAHGAHSQQMVPPPPQGTKPCPPMGMFGSPFGNFSPVNGIVLPGDTMAQKIAPKQAAAGMIPTPQAKPPASGAGGSQRLRSNMLRSPELTLATSGRL 345
            RPGAG AMSSA GSSPSTF HGAHSQQMVPPPP GTKPCPPMGMFGSPFGNFSPVNGIVLPGDT+AQKI PKQAAAG+IPTP+AKPPASGAGGSQRLRSNMLRSPELTLATSGRL
Sbjct:  230 RPGAGTAMSSAEGSSPSTFTHGAHSQQMVPPPPPGTKPCPPMGMFGSPFGNFSPVNGIVLPGDTIAQKIVPKQAAAGIIPTPKAKPPASGAGGSQRLRSNMLRSPELTLATSGRL 344
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BLAST of mRNA_Ecto-sp13_S_contig68030.17746.1 vs. uniprot
Match: A0A6H5K1Z4_9PHAE (Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z4_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 7.240e-59
Identity = 106/115 (92.17%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    1 RPGAGAAMSSAAGSSPSTFAHGAHSQQMVPPPPQGTKPCPPMGMFGSPFGNFSPVNGIVLPGDTMAQKIAPKQAAAGMIPTPQAKPPASGAGGSQRLRSNMLRSPELTLATSGRL 345
            RPGAGAA+SSAAGSSPSTF HGAHSQQMVP    GTKPCPPMGMFGSPFGNFSPVNGIVLPGDTMAQKIAPKQ AAGMIP PQAKPPASGAGGSQRLRSNMLRSPELTLATSGR+
Sbjct:  231 RPGAGAAVSSAAGSSPSTFTHGAHSQQMVPXXXPGTKPCPPMGMFGSPFGNFSPVNGIVLPGDTMAQKIAPKQTAAGMIPAPQAKPPASGAGGSQRLRSNMLRSPELTLATSGRM 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68030.17746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS6_ECTSI4.890e-6193.04Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5K1Z4_9PHAE7.240e-5992.17Pyridoxal 5'-phosphate synthase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68030contigEcto-sp13_S_contig68030:174..725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score200.3
Seed ortholog evalue4.6e-49
Seed eggNOG ortholog2880.D7FQS6
Preferred namePNPO
Model size345
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K08821
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,ko05202,map00750,map01100,map01120,map05202
KEGG ModuleM00124
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009743,GO:0009744,GO:0009987,GO:0010033,GO:0010181,GO:0016491,GO:0016638,GO:0016641,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019842,GO:0030170,GO:0031974,GO:0031981,GO:0032553,GO:0034285,GO:0034641,GO:0036094,GO:0042221,GO:0042364,GO:0042802,GO:0042803,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0046983,GO:0048037,GO:0050662,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0070013,GO:0070279,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901700
Exons2
EggNOG free text desc.pyridoxamine-phosphate oxidase activity
EggNOG OGsCOG0259@1,KOG2586@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_000340.1
EC1.4.3.5,2.7.11.22
Cds size324
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.3849473-CDS-Ecto-sp13_S_contig68030:173..4261681463935.3849473-CDS-Ecto-sp13_S_contig68030:173..426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68030 174..426 -
1681463935.3968234-CDS-Ecto-sp13_S_contig68030:633..7041681463935.3968234-CDS-Ecto-sp13_S_contig68030:633..704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68030 634..704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463935.407456-UTR-Ecto-sp13_S_contig68030:704..7251681463935.407456-UTR-Ecto-sp13_S_contig68030:704..725Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68030 705..725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68030.17746.1prot_Ecto-sp13_S_contig68030.17746.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68030 174..704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68030.17746.1

>prot_Ecto-sp13_S_contig68030.17746.1 ID=prot_Ecto-sp13_S_contig68030.17746.1|Name=mRNA_Ecto-sp13_S_contig68030.17746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MSSAAGSSPSTFAHGAHSQQMVPPPPQGTKPCPPMGMFGSPFGNFSPVNG
IVLPGDTMAQKIAPKQAAAGMIPTPQAKPPASGAGGSQRLRSNMLRSPEL
TLATSGRL
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mRNA from alignment at Ecto-sp13_S_contig68030:174..725-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68030.17746.1 ID=mRNA_Ecto-sp13_S_contig68030.17746.1|Name=mRNA_Ecto-sp13_S_contig68030.17746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68030:174..725- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGGGTGCCGGGGCTGCGATGTCCTCCGCCGCGGGGTCGTCACCATC
GACGTTCGCGCATGGGGCACACTCGCAGCAAATGGTTCCACCGTGAGTGC
CAATGGATTGTTGGTGTTGGAGTTGCTAAGGGTTTGACGCGCGTTTGCCA
AGCGGTCTGAGCGTAAGTGCTGTTGTCCCCGCGATCCCCCCGCACTCATG
CAAACAAAACGAATTGGGAATCCAAACAACCGAATGGGGAAGCTTATTGC
CGCCTTTCACCCACCCCCTCTCTCTCTCTCGTTGATACGAGGAAAGCAGG
CCTCCCCAAGGGACTAAGCCGTGCCCCCCGATGGGCATGTTCGGGTCGCC
GTTCGGCAACTTTTCGCCGGTCAACGGCATCGTCCTGCCCGGCGACACAA
TGGCCCAGAAGATAGCACCCAAGCAAGCCGCGGCGGGGATGATCCCCACC
CCGCAAGCCAAGCCGCCGGCGTCGGGGGCAGGGGGCTCACAGCGTCTCCG
CAGCAACATGCTCCGCTCCCCGGAGCTCACGCTGGCGACGTCGGGAAGGC
TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68030:174..725-

>mRNA_Ecto-sp13_S_contig68030.17746.1 ID=mRNA_Ecto-sp13_S_contig68030.17746.1|Name=mRNA_Ecto-sp13_S_contig68030.17746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68030:174..725- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTCCGCCGCGGGGTCGTCACCATCGACGTTCGCGCATGGGGCACA
CTCGCAGCAAATGGTTCCACCGCCTCCCCAAGGGACTAAGCCGTGCCCCC
CGATGGGCATGTTCGGGTCGCCGTTCGGCAACTTTTCGCCGGTCAACGGC
ATCGTCCTGCCCGGCGACACAATGGCCCAGAAGATAGCACCCAAGCAAGC
CGCGGCGGGGATGATCCCCACCCCGCAAGCCAAGCCGCCGGCGTCGGGGG
CAGGGGGCTCACAGCGTCTCCGCAGCAACATGCTCCGCTCCCCGGAGCTC
ACGCTGGCGACGTCGGGAAGGCTC
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