mRNA_Ecto-sp13_S_contig68.17737.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig68.17737.1
Unique NamemRNA_Ecto-sp13_S_contig68.17737.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig68.17737.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.340e-56
Identity = 177/226 (78.32%), Postives = 180/226 (79.65%), Query Frame = 3 
Query:    3 IGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVGSQVS----SSAEGTVIVQVEPAGSVDSAPSSVVGEPTTTXXXXXXXXXXAGPTTEARPGLAAVAXXXXXXXXXXXXXXXXXXXXXXXX-RPMLATDRSESXXXXXXXXXXXXXXXXXXXXXXXXPRPPALVASGSGSMSYSMGSSGHPTSTRSSTTSSPGSNLIGVSLVGSAPSTDSILEPSPESSPRR 665
            IGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQV         SSAEGTVIVQVEPA SVDSAPSSVVG     XXXXXXXXX AG TTEAR G     XXXXXXXXXXXXXXXX         RPMLATDRSES         XXXXXXXXXXXXX  PRPPAL+ASGSGSMSYSMGSSGHPTSTRSSTTSSPGSNLIGVSL+ + PS DSILEPSPESSPRR
Sbjct: 1131 IGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVXXXXXXXXXSSAEGTVIVQVEPAASVDSAPSSVVGXXXXXXXXXXXXXXIAGLTTEARLGXXXXXXXXXXXXXXXXXXXXXSSNARARQNRPMLATDRSESSGSEQSAPSXXXXXXXXXXXXXTIPRPPALLASGSGSMSYSMGSSGHPTSTRSSTTSSPGSNLIGVSLISNTPSADSILEPSPESSPRR 1356
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BLAST of mRNA_Ecto-sp13_S_contig68.17737.1 vs. uniprot
Match: D8LBV2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV2_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.210e-25
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 3 
Query:    3 IGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVGSQVSSSAEGTVIVQVEPAGSVDSAPSSVVGE 206
            IGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVGSQVSSSAEGTVIVQVEPA SVDSAPSSVV E
Sbjct: 1144 IGGALPTVMEEGSPRGAQAAFSDAGTSSQVAEGSQVGSQVSSSAEGTVIVQVEPAESVDSAPSSVVAE 1211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig68.17737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWL3_9PHAE2.340e-5678.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV2_ECTSI2.210e-2597.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig68contigEcto-sp13_S_contig68:22968..23960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size767
Hectar predicted targeting categoryother localisation
Exons2
Cds size741
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.4822216-CDS-Ecto-sp13_S_contig68:22967..236861681463934.4822216-CDS-Ecto-sp13_S_contig68:22967..23686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 22968..23686 -
1681463934.5045428-CDS-Ecto-sp13_S_contig68:23912..239341681463934.5045428-CDS-Ecto-sp13_S_contig68:23912..23934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig68 23913..23934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463934.5160425-UTR-Ecto-sp13_S_contig68:23934..239601681463934.5160425-UTR-Ecto-sp13_S_contig68:23934..23960Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig68 23935..23960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig68.17737.1prot_Ecto-sp13_S_contig68.17737.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig68 22968..23934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig68.17737.1

>prot_Ecto-sp13_S_contig68.17737.1 ID=prot_Ecto-sp13_S_contig68.17737.1|Name=mRNA_Ecto-sp13_S_contig68.17737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MEEGSPRGAQAAFSDAGTSSQVAEGSQVGSQVSSSAEGTVIVQVEPAGSV
DSAPSSVVGEPTTTSSASESTTTTAGPTTEARPGLAAVAAAAGAGAGAAT
ATVFSSNARARQNRPMLATDRSESSGSEQSAPSPGGPLQQQQQQQQTIPR
PPALVASGSGSMSYSMGSSGHPTSTRSSTTSSPGSNLIGVSLVGSAPSTD
SILEPSPESSPRRRRTSPTPPLPPVKEASQEYASSSGTAAAGAVAAT
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mRNA from alignment at Ecto-sp13_S_contig68:22968..23960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig68.17737.1 ID=mRNA_Ecto-sp13_S_contig68.17737.1|Name=mRNA_Ecto-sp13_S_contig68.17737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:22968..23960- (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCGGCGGCGCTCTTCCCACGGTGATGGAGGAAGGATCTCCGAGAGGC
GAGTATTTTTTTTTAGTTTGCTTAGCGCCTCCTAGAAGTGAAGGCGGGCG
TATGTGTTGACTCACTGGCCTAGCGGTGGTGGGTATTGGGTAGGTGGGTA
GTACTGTAGCAGCCCACAACGTGTTATTATATATATATCACCACCACGTA
CTAACGAAAGCGCTCACCCAAGACACCCCCACACCCACACGCTGCTCCAT
TTTCTTCTTTTTTGTTCATTGCAGGTGCGCAAGCAGCCTTCTCCGACGCC
GGCACCTCCTCGCAGGTCGCGGAGGGAAGCCAGGTCGGCAGCCAGGTCTC
CTCGAGCGCGGAGGGGACCGTCATCGTCCAGGTCGAGCCCGCCGGGTCCG
TAGACTCGGCCCCGAGTTCGGTCGTCGGTGAGCCGACGACGACCTCTTCG
GCGTCGGAATCGACCACCACCACCGCCGGCCCCACCACCGAGGCCAGGCC
TGGCCTAGCGGCGGTGGCGGCGGCGGCCGGAGCCGGAGCCGGCGCAGCGA
CGGCGACCGTGTTCTCTTCGAACGCACGGGCGCGCCAAAACCGGCCCATG
CTCGCCACCGACCGGTCTGAGTCTTCGGGGTCGGAGCAGTCCGCGCCGTC
CCCCGGAGGGCCGCTGCAGCAGCAGCAGCAGCAGCAGCAGACTATTCCTC
GTCCCCCGGCCCTGGTGGCCAGCGGGAGCGGGAGCATGTCGTATAGTATG
GGCAGCAGCGGCCACCCGACGTCCACCAGGAGCAGCACCACCAGTAGCCC
GGGCTCCAACCTCATCGGGGTCTCCCTAGTCGGTAGCGCCCCGAGCACGG
ACTCCATCCTCGAACCGTCCCCGGAGTCGTCGCCGCGCAGGCGGCGCACC
TCGCCGACGCCTCCGCTGCCGCCGGTCAAGGAGGCCTCGCAGGAGTATGC
ATCGTCGAGCGGCACCGCGGCCGCCGGCGCCGTGGCGGCTACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig68:22968..23960-

>mRNA_Ecto-sp13_S_contig68.17737.1 ID=mRNA_Ecto-sp13_S_contig68.17737.1|Name=mRNA_Ecto-sp13_S_contig68.17737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig68:22968..23960- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAAGGATCTCCGAGAGGTGCGCAAGCAGCCTTCTCCGACGCCGG
CACCTCCTCGCAGGTCGCGGAGGGAAGCCAGGTCGGCAGCCAGGTCTCCT
CGAGCGCGGAGGGGACCGTCATCGTCCAGGTCGAGCCCGCCGGGTCCGTA
GACTCGGCCCCGAGTTCGGTCGTCGGTGAGCCGACGACGACCTCTTCGGC
GTCGGAATCGACCACCACCACCGCCGGCCCCACCACCGAGGCCAGGCCTG
GCCTAGCGGCGGTGGCGGCGGCGGCCGGAGCCGGAGCCGGCGCAGCGACG
GCGACCGTGTTCTCTTCGAACGCACGGGCGCGCCAAAACCGGCCCATGCT
CGCCACCGACCGGTCTGAGTCTTCGGGGTCGGAGCAGTCCGCGCCGTCCC
CCGGAGGGCCGCTGCAGCAGCAGCAGCAGCAGCAGCAGACTATTCCTCGT
CCCCCGGCCCTGGTGGCCAGCGGGAGCGGGAGCATGTCGTATAGTATGGG
CAGCAGCGGCCACCCGACGTCCACCAGGAGCAGCACCACCAGTAGCCCGG
GCTCCAACCTCATCGGGGTCTCCCTAGTCGGTAGCGCCCCGAGCACGGAC
TCCATCCTCGAACCGTCCCCGGAGTCGTCGCCGCGCAGGCGGCGCACCTC
GCCGACGCCTCCGCTGCCGCCGGTCAAGGAGGCCTCGCAGGAGTATGCAT
CGTCGAGCGGCACCGCGGCCGCCGGCGCCGTGGCGGCTACT
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