mRNA_Ecto-sp13_S_contig67755.17699.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67755.17699.1
Unique NamemRNA_Ecto-sp13_S_contig67755.17699.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: D7FWL4_ECTSI (Asparaginase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL4_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 4.320e-52
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 2
Query:    2 STVLVINTGGTLGMRKEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVVC 265
            STVLVINTGGTLGMRKED SGGLAPVPGYFTSQMLTMEEL+ ADDMPFFDIVEYDPLLDSSCF+PSDWARIAIDIGRAYHCYDGFVVC
Sbjct:   76 STVLVINTGGTLGMRKEDKSGGLAPVPGYFTSQMLTMEELVIADDMPFFDIVEYDPLLDSSCFEPSDWARIAIDIGRAYHCYDGFVVC 163          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A6H5K9P1_9PHAE (Asparaginase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P1_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.890e-47
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 2
Query:   41 MRKEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVVC 265
            MRKE+ SGGLAPVPGYFTSQMLTMEEL+SADDMPFFDIVEYDPLLDSSCFQPSDWARIA+DIGRAYHCYDGFVVC
Sbjct:    1 MRKENKSGGLAPVPGYFTSQMLTMEELVSADDMPFFDIVEYDPLLDSSCFQPSDWARIAVDIGRAYHCYDGFVVC 75          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A835Z9K3_9STRA (Asparaginase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.930e-21
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   47 KEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVVC 265
            ++D++G LAP PG+FT ++  +EEL+ A+ MP FD+VEY PLLDSSCF P DW  +A DIG AY  Y GFVVC
Sbjct:    2 QKDDTGSLAPKPGFFTERIFMLEELVRAE-MPTFDVVEYSPLLDSSCFTPDDWKNVATDIGAAYDRYKGFVVC 73          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A7S3XTZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTZ4_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 2.180e-19
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 2
Query:    8 VLVINTGGTLGMRKEDNSGGLAPVPGYFTSQMLTMEEL-MSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVVC 265
            VLVI TGGT+GM K D +G LAP PG+FT  +  MEEL + ++ MP   I+E+DP+LDSSC  P DW  IA  I   Y  YD FVVC
Sbjct:  111 VLVIYTGGTIGM-KPDLNGSLAPSPGFFTEYLKNMEELQVGSNSMPKVSIMEFDPILDSSCMGPEDWVHIAEVIEENYLQYDSFVVC 196          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A7S1MQI3_NEODS (Asparaginase n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MQI3_NEODS)

HSP 1 Score: 84.0 bits (206), Expect = 3.930e-17
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    5 TVLVINTGGTLGMRKEDNSGG-LAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVV 262
            TVLVI  GGT+GM  E   GG LAP+ GY T QMLTM +L +   +PFFD++EYD L+DSS     DW  +  DI R Y  YD FV+
Sbjct:   17 TVLVIYNGGTIGMAPEPKLGGELAPMKGYLTHQMLTMSDL-THPSIPFFDVLEYDKLIDSSDMSIEDWGMLLKDIERFYFEYDAFVI 102          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A1N6E338_9GAMM (Asparaginase n=18 Tax=Salinivibrio TaxID=51366 RepID=A0A1N6E338_9GAMM)

HSP 1 Score: 82.0 bits (201), Expect = 1.360e-16
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    8 VLVINTGGTLGMRKEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVV 262
            + +  TGGT+GM+K D+  G  PV G+   Q+  M E     +MP F I EY+PL+DSS   P+DW RIA DIG  YH YDGFV+
Sbjct:    6 IYIAYTGGTIGMQKSDH--GYVPVSGFLQQQLEKMPEF-HRPEMPLFTIHEYEPLIDSSDMTPTDWQRIADDIGENYHHYDGFVI 87          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A2N2DT39_9FIRM (Asparaginase n=1 Tax=Firmicutes bacterium HGW-Firmicutes-11 TaxID=2013772 RepID=A0A2N2DT39_9FIRM)

HSP 1 Score: 82.0 bits (201), Expect = 1.400e-16
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    8 VLVINTGGTLGMRKEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVV 262
            V +INTGGT+ M K +N  G APV G F  Q L     ++ D+MP FD++EYDPLLDSS     +W +IA DI + Y  YDGFV+
Sbjct:    5 VCIINTGGTISMTKTEN--GYAPVRG-FIEQALCQICALNEDEMPSFDLIEYDPLLDSSSIAVKEWVKIAADIEKRYEDYDGFVI 86          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: UPI00167A2103 (type I asparaginase n=1 Tax=Bacterioplanes sanyensis TaxID=1249553 RepID=UPI00167A2103)

HSP 1 Score: 79.3 bits (194), Expect = 1.350e-15
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    8 VLVINTGGTLGMRKEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVV 262
            + ++ TGGT+GM+  DN  GL P  GY TS+ L  E  + +  +P +D+VEY+PLLDSS  +P  W +IA DI + Y  YDGF+V
Sbjct:    6 IAILYTGGTIGMQPSDN--GLIPAAGYLTSR-LQQEPRLQSGQVPAYDLVEYEPLLDSSDMEPHHWQQIAEDIAQRYSDYDGFLV 87          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A451D1I3_9GAMM (Asparaginase n=1 Tax=Candidatus Erwinia haradaeae TaxID=1922217 RepID=A0A451D1I3_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 2.630e-15
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    8 VLVINTGGTLGMRKEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVV 262
            + V  TGGT+GM++  N  G  PV GY  +Q+L   E    ++MP+F + EY PL+DS+   P+DW  IA DI R YH YDGFV+
Sbjct:    6 IYVAYTGGTIGMKQSRN--GFIPVSGYLQNQLLNTLEF-HREEMPYFVLHEYQPLIDSADMTPNDWQSIANDIRRNYHAYDGFVI 87          
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Match: A0A7J6SZW2_PEROL (Asparaginase n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SZW2_PEROL)

HSP 1 Score: 78.6 bits (192), Expect = 3.170e-15
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    8 VLVINTGGTLGMRKEDNSGGLAPVPGYFTSQMLTMEELMSADDMPFFDIVEYDPLLDSSCFQPSDWARIAIDIGRAYHCYDGFVV 262
            VLVI TGGT+GM+   N G L PVPGY T Q+  + EL  A  MP FD++EY+ L+DSS   P++WA++   I   Y  YDGFV+
Sbjct:    9 VLVIYTGGTIGMKPYAN-GTLHPVPGYLTEQLNNLPELQ-APGMPDFDVIEYENLIDSSDMSPANWAQMTKTIDDHYADYDGFVI 91          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67755.17699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWL4_ECTSI4.320e-5295.45Asparaginase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5K9P1_9PHAE1.890e-4794.67Asparaginase domain-containing protein n=1 Tax=Ect... [more]
A0A835Z9K3_9STRA1.930e-2158.90Asparaginase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S3XTZ4_HETAK2.180e-1955.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1MQI3_NEODS3.930e-1752.87Asparaginase n=1 Tax=Neobodo designis TaxID=312471... [more]
A0A1N6E338_9GAMM1.360e-1649.41Asparaginase n=18 Tax=Salinivibrio TaxID=51366 Rep... [more]
A0A2N2DT39_9FIRM1.400e-1650.59Asparaginase n=1 Tax=Firmicutes bacterium HGW-Firm... [more]
UPI00167A21031.350e-1547.06type I asparaginase n=1 Tax=Bacterioplanes sanyens... [more]
A0A451D1I3_9GAMM2.630e-1547.06Asparaginase n=1 Tax=Candidatus Erwinia haradaeae ... [more]
A0A7J6SZW2_PEROL3.170e-1550.59Asparaginase n=1 Tax=Perkinsus olseni TaxID=32597 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67755contigEcto-sp13_S_contig67755:215..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463931.1992016-CDS-Ecto-sp13_S_contig67755:214..3171681463931.1992016-CDS-Ecto-sp13_S_contig67755:214..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67755 215..317 -
1681463931.2094004-CDS-Ecto-sp13_S_contig67755:506..6701681463931.2094004-CDS-Ecto-sp13_S_contig67755:506..670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67755 507..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67755.17699.1prot_Ecto-sp13_S_contig67755.17699.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67755 215..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67755.17699.1

>prot_Ecto-sp13_S_contig67755.17699.1 ID=prot_Ecto-sp13_S_contig67755.17699.1|Name=mRNA_Ecto-sp13_S_contig67755.17699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
VNGASDQHRGYARDEEGRQFGRPGSRAGLLHLPDAHHGGADERGRHAIFR
HRGVRSFAGQLLLPAVRLGPDRHRHRPRLPLLRRFRGLH
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mRNA from alignment at Ecto-sp13_S_contig67755:215..670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67755.17699.1 ID=mRNA_Ecto-sp13_S_contig67755.17699.1|Name=mRNA_Ecto-sp13_S_contig67755.17699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67755:215..670- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAACGGTGCTAGTGATCAACACCGGGGGTACGCTCGGGATGAGGAAGG AAGACAATTCGGGCGGCCTGGCTCCCGTGCCGGGCTACTTCACCTCCCAG ATGCTCACCATGGAGGAGCTGATGAGCGCGGACGACATGCCATTTTTCGA CATCGTGGAGTACGGTACGTACGCGTATCCCCCCTCCGATCAATGTCGCC ATATACTCACATTGCTCCGTCTTTCTACTGCGGCCCCCCTCCGATCAATG TCGCCATATACTCACATTGCTCCGTCTTTCTACTGCGGCATGACACGCGT GGACGACGTTTCTTGGTTTTTCGCTGTACGGTTTCGACGCATGAGAAGAG CAGATCCTTTGCTGGACAGCTCTTGCTTCCAGCCGTCCGACTGGGCCCGG ATCGCCATAGACATCGGCCGCGCCTACCACTGCTACGACGGTTTCGTGGT TTGCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67755:215..670-

>mRNA_Ecto-sp13_S_contig67755.17699.1 ID=mRNA_Ecto-sp13_S_contig67755.17699.1|Name=mRNA_Ecto-sp13_S_contig67755.17699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67755:215..670- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAACGGTGCTAGTGATCAACACCGGGGGTACGCTCGGGATGAGGAAGG
AAGACAATTCGGGCGGCCTGGCTCCCGTGCCGGGCTACTTCACCTCCCAG
ATGCTCACCATGGAGGAGCTGATGAGCGCGGACGACATGCCATTTTTCGA
CATCGTGGAGTACGATCCTTTGCTGGACAGCTCTTGCTTCCAGCCGTCCG
ACTGGGCCCGGATCGCCATAGACATCGGCCGCGCCTACCACTGCTACGAC
GGTTTCGTGGTTTGCAT
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