mRNA_Ecto-sp13_S_contig67709.17695.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67709.17695.1
Unique NamemRNA_Ecto-sp13_S_contig67709.17695.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 8.350e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   19 VWQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 243
            V QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFE+R
Sbjct:  264 VAQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFETR 338
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.130e-36
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 243
            VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR
Sbjct:   56 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 127
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.960e-23
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   25 QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 243
            QVL+ GTLSDK++ALT++ +ESPVHRLA LD L++L  K +RRTAQMA EALKDLFI++LLPD R+LVPF  R
Sbjct:  238 QVLKSGTLSDKISALTMRCKESPVHRLADLDKLVELATKHDRRTAQMAQEALKDLFISDLLPDERRLVPFRER 310
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A4D9CW61_9STRA (CBF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW61_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.960e-18
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   25 QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPF 234
            ++LR GTLSDKVAALTL VQE+P+ RL  LD LL L  K +RR AQMA+EAL+DL   NLLP  RKLVP+
Sbjct:  160 KILRQGTLSDKVAALTLLVQEAPLFRLRTLDALLALAQKADRRCAQMAIEALQDLLEHNLLPPERKLVPW 229
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A7S2GVG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVG6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.260e-18
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:   25 QVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 243
            Q+LR GTL+D++AA+TL+VQ+SP+H L+ LDGLL LG K   R +++A EAL DLF  NLLP  R+L+  ESR
Sbjct:   74 QMLRSGTLADRIAAMTLRVQQSPLHELSSLDGLLKLGQKGNHRGSRLAFEALCDLFKENLLPADRQLIALESR 146
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A7S0DUS8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DUS8_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 1.660e-17
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 243
            V+  GTL DKVAALTL VQESP+H L  LD LL +  KK  R   M LEALKDLF+  LLPD+RKL+ FE R
Sbjct:  103 VMSTGTLQDKVAALTLAVQESPIHSLPYLDRLLLMASKKAAREQSMGLEALKDLFLHTLLPDNRKLLDFEER 174
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A0B7B7L4_9EUPU (CBF domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B7L4_9EUPU)

HSP 1 Score: 84.3 bits (207), Expect = 3.220e-17
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPF 234
            VL  GTL+DK+AALTL +QESPVH LA LD L+ +  KK RR A +A++ L+DLF+T LLPD RKL  F
Sbjct:  236 VLVSGTLTDKMAALTLLIQESPVHNLASLDSLISMARKKGRREAMLAVDTLRDLFLTGLLPDDRKLRAF 304
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A1R0GLG4_9FUNG (Ribosome biogenesis protein MAK21 n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GLG4_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 1.530e-16
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   19 VWQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 243
            V  +LR GTLSDK++ALTL VQESP+H +A L+ L+ +  KK RR A MA+ +LKDL + NLLPD RKLV F  R
Sbjct:  249 VSSILRTGTLSDKISALTLLVQESPIHNMASLNTLMGMARKKHRREAIMAVSSLKDLLVNNLLPD-RKLVYFADR 322
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: UPI0003595FFD (CCAAT/enhancer-binding protein zeta isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI0003595FFD)

HSP 1 Score: 82.4 bits (202), Expect = 1.530e-16
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFE 237
            VL  GTL+DK+AALTL VQESP+H L  +D L  +  KK RR + MA++ L+DLF+T LLPD RKL PFE
Sbjct:  264 VLSSGTLTDKMAALTLLVQESPLHNLGSVDTLGTMSGKKGRRESMMAVDTLRDLFLTGLLPDDRKLRPFE 333
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BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Match: A0A2C9M018_BIOGL (CBF domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9M018_BIOGL)

HSP 1 Score: 81.6 bits (200), Expect = 2.850e-16
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   28 VLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKERRTAQMALEALKDLFITNLLPDSRKLVPFESR 243
            VL  GTLSDK+AALTL +QESP+H +  LD L+ +  KK +R A MA++ L+DL++T LLPD+RKL  F  +
Sbjct:  267 VLSSGTLSDKMAALTLLIQESPLHNMVSLDTLISMSSKKGKREAMMAVDTLRDLYLTGLLPDNRKLRAFNQQ 338
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67709.17695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI8.350e-3797.33CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5C9_9PHAE2.130e-36100.00Reverse transcriptase domain-containing protein n=... [more]
A0A835ZC94_9STRA1.960e-2368.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CW61_9STRA4.960e-1865.71CBF domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2GVG6_9STRA5.260e-1857.53Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0DUS8_9EUKA1.660e-1762.50Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A0B7B7L4_9EUPU3.220e-1760.87CBF domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A1R0GLG4_9FUNG1.530e-1658.67Ribosome biogenesis protein MAK21 n=1 Tax=Smittium... [more]
UPI0003595FFD1.530e-1660.00CCAAT/enhancer-binding protein zeta isoform X1 n=2... [more]
A0A2C9M018_BIOGL2.850e-1654.17CBF domain-containing protein n=1 Tax=Biomphalaria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67709contigEcto-sp13_S_contig67709:2..646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score138.3
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
Model size243
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.8981571-CDS-Ecto-sp13_S_contig67709:1..881681463930.8981571-CDS-Ecto-sp13_S_contig67709:1..88Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67709 2..88 -
1681463930.9096577-CDS-Ecto-sp13_S_contig67709:490..6461681463930.9096577-CDS-Ecto-sp13_S_contig67709:490..646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67709 491..646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67709.17695.1prot_Ecto-sp13_S_contig67709.17695.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67709 2..646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67709.17695.1

>prot_Ecto-sp13_S_contig67709.17695.1 ID=prot_Ecto-sp13_S_contig67709.17695.1|Name=mRNA_Ecto-sp13_S_contig67709.17695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MRCFWGVWQVLRGGTLSDKVAALTLQVQESPVHRLAVLDGLLDLGLKKER
RTAQMALEALKDLFITNLLPDSRKLVPFESR
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mRNA from alignment at Ecto-sp13_S_contig67709:2..646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67709.17695.1 ID=mRNA_Ecto-sp13_S_contig67709.17695.1|Name=mRNA_Ecto-sp13_S_contig67709.17695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67709:2..646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATGTTTTTGGGGGGTGTGGCAGGTGTTGCGAGGCGGGACTTTGTC
GGACAAGGTGGCGGCGCTGACCCTCCAGGTGCAGGAGAGCCCCGTGCACC
GCCTGGCCGTACTGGACGGTCTGCTGGACCTCGGCCTCAAGAAAGAGCGG
CGCACGGTAAGCAACGTTCCGAGCTCGTTTACGGGCTGCGGTTGTTAAGG
CTAATGCCTAGTTCCTGCCAATGCTGTCGCTGCTGCTGAGGTTATGGCGG
AAGCTAAGCTAATGTGGGCCAATGCACTCTTGTGAGTGCTGTTGCTGCTG
CTGAGGCTAGTGCTAATGCTGCTACTGCTATAATCCTGCTTGTGCTCCCG
CGTGAAACTGATGGCAATGCTGAGTGTGTAGATGGCGATGCTGCTGCTGC
TGCTACTGCTGCTCCGGCGTAATACTGATTGGCGATGATTATGTAGAATC
AGCCGCTGCTGCTGCTGCTCCGGCGTGATACTGATGGCGACGATTACGTC
GATTGCGATGCTGCTGCTACTTCTGCTGCTGCTCCTGTCGCTTTCCTCAA
CCGTACAGGCCCAGATGGCTCTCGAGGCCCTCAAGGATCTGTTCATCACC
AACCTCCTTCCGGACTCTAGGAAGCTCGTGCCCTTCGAGTCACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67709:2..646-

>mRNA_Ecto-sp13_S_contig67709.17695.1 ID=mRNA_Ecto-sp13_S_contig67709.17695.1|Name=mRNA_Ecto-sp13_S_contig67709.17695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67709:2..646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATGTTTTTGGGGGGTGTGGCAGGTGTTGCGAGGCGGGACTTTGTC
GGACAAGGTGGCGGCGCTGACCCTCCAGGTGCAGGAGAGCCCCGTGCACC
GCCTGGCCGTACTGGACGGTCTGCTGGACCTCGGCCTCAAGAAAGAGCGG
CGCACGGCCCAGATGGCTCTCGAGGCCCTCAAGGATCTGTTCATCACCAA
CCTCCTTCCGGACTCTAGGAAGCTCGTGCCCTTCGAGTCACGC
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