mRNA_Ecto-sp13_S_contig6768.17688.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6768.17688.1
Unique NamemRNA_Ecto-sp13_S_contig6768.17688.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: D8LLF6_ECTSI (ABC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF6_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 5.340e-68
Identity = 112/123 (91.06%), Postives = 113/123 (91.87%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVLREE 375
            D  GVK+YCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLR        HIDRTLGAPINTFVIAAKTCISVLREE
Sbjct:  459 DIPGVKKYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLR--------HIDRTLGAPINTFVIAAKTCISVLREE 573          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: W7TCN3_9STRA (Abc1 protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCN3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.950e-25
Identity = 59/124 (47.58%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCI-SVLREE 375
            D  GVK YCQ+LN+G MY LLAAIL  RSWD I  T+  +  L T   + +K ++R Y Q+Y  EI  +L+ V R+MLLL K NDCLR        HIDR LGAP+++ ++ A+  + ++LREE
Sbjct:  626 DLPGVKYYCQKLNAGRMYSLLAAILTSRSWDDI--TSPDLGSLQTPSSKEDKTLIRSYAQRYYFEIVDILNSVPREMLLLLKMNDCLR--------HIDRALGAPVDSSLVTAEESVKALLREE 739          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A7J7QKT6_9CHLO (ABC1 family-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QKT6_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 4.600e-25
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVLRE 372
            D AG+K++ + +N+GD Y L AA+L  R WD I D    ++ L     + EK M+RGY   YA +I  LL ++ R +LLL KTNDCLR         +D +LGAP+NTFVI AKTC   L E
Sbjct:  371 DKAGIKQHAESMNAGDAYPLFAAMLTMRPWDQIVDFDPQLEHLSLTSNKQEKDMLRGYASVYAKQIGDLLLRMPRPLLLLLKTNDCLR--------SVDLSLGAPVNTFVITAKTCSRALAE 484          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A383WHM2_TETOB (ABC1 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHM2_TETOB)

HSP 1 Score: 107 bits (268), Expect = 9.190e-25
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVLRE 372
            D AG+K++ + +N+GD Y L AA+L  R WD I D    ++ L     + EK M+RGY   YA +I  LL ++ R +LLL KTNDCLR         +D +LGAPINTFVI AKTC   L E
Sbjct:  401 DKAGIKQHAESMNAGDAYPLFAAMLTMRPWDQIVDFDPQLEHLSLTSNKQEKDMLRGYAAIYAKQIGDLLLRMPRPLLLLLKTNDCLR--------SVDLSLGAPINTFVITAKTCNRALAE 514          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A7S3V6U3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6U3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.450e-23
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAI--EDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVL 366
            D  G+KE C  L   +MY LLAA+L  R +D +   + T       + D+ ++  M+RGY QQY  EI  +L KV RQMLLLFK NDCLR        HID +LG+P NT +IA K     L
Sbjct:  467 DIEGIKESCSSLGVEEMYPLLAAMLTSRPFDEVIEREKTKAFTSKESLDVTSDAAMIRGYAQQYLKEIIQMLDKVPRQMLLLFKMNDCLR--------HIDHSLGSPANTLIIAGKYATETL 580          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A1D2ABQ4_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2ABQ4_AUXPR)

HSP 1 Score: 93.6 bits (231), Expect = 3.850e-21
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 CFDTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVLREE 375
            C D A ++ +   + +G    L A +L  R WD +       + L  +  E E+ ++RG+  QYA EIA LL  + R +LLL KTNDCLR         +DR LG P+NTFV  A+ C + L +E
Sbjct:   45 CADEAAIRRHASAMGAGASVPLFAGMLTQRPWDQVRRAHGAPERLRVEGSEAERELIRGFAVQYASEIAHLLRCMPRPLLLLLKTNDCLRA--------VDRALGTPVNTFVSTARECSAALSQE 161          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A5J4XEE2_9CHLO (ABC1 domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XEE2_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 2.700e-20
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVLRE 372
            D  G+KE+ Q +N+GDMY L A +L  R WD +   +  +D L+    E E+  ++   Q +A +I  LL KV R +LLL KTNDCLR         +D  LG P+NTFVI A+ C   L +
Sbjct:  398 DAEGIKEHSQAMNAGDMYPLFAGMLTNRPWDEV--ISKDIDHLYMSGDEEERKSIQETSQMFAAQITQLLFKVPRVLLLLLKTNDCLR--------SVDLALGEPVNTFVITARECSRALTD 509          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A2K1IMA9_PHYPA (ABC1 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IMA9_PHYPA)

HSP 1 Score: 94.4 bits (233), Expect = 5.090e-20
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGD-MYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVLRE 372
            D+  +KE+C  L +GD +Y L AAIL  R WD I D +  +D L   D   EK  ++GY  QY  EI+ LLS++ R +LLL KTNDCLR         +D  LGAPINT++I A+T    + E
Sbjct:  443 DSKEIKEHCIGLGAGDDLYALFAAILTMRPWDKIVDQS--IDHLLVPDTPEEKDELQGYASQYFWEISALLSRLPRVVLLLLKTNDCLRA--------VDNALGAPINTYLIVARTSSKAVSE 555          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A482SVW2_9ARCH (ABC1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVW2_9ARCH)

HSP 1 Score: 87.4 bits (215), Expect = 1.770e-19
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINT 330
            D  G++++CQ +N+G ++ LLAAIL  + WD I      ++ L      TE  M++ Y +QY  EI  LL +V   +LL+FKTNDCLR        HID TLG PIN+
Sbjct:   44 DEVGIEKHCQSMNAGPLFPLLAAILTMKPWDDI--MADDLNKLKRNAKSTEHTMLQAYAKQYFREIVELLGQVPSDLLLVFKTNDCLR--------HIDNTLGTPINS 141          
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Match: A0A388MF14_CHABU (ABC1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MF14_CHABU)

HSP 1 Score: 91.7 bits (226), Expect = 4.460e-19
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    7 DTAGVKEYCQRLNSG-DMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDIETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHIDRTLGAPINTFVIAAKTCISVL 366
            D   ++E+ + L +G D+Y L A IL  R W+ + DT+  +D L   D E +K  ++ Y  QYA E++ LL+++ R +LLL KTNDCLR          D  LGAP+NTF+I A+ C   L
Sbjct:  426 DENAIREHSKALGAGEDLYRLFAGILTMRPWNHVIDTS--IDHLKIPDTEEDKAQIQFYAAQYAMEVSTLLARLPRVLLLLLKTNDCLRA--------TDNALGAPVNTFIIIARECTRAL 536          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6768.17688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLF6_ECTSI5.340e-6891.06ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
W7TCN3_9STRA2.950e-2547.58Abc1 protein n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7J7QKT6_9CHLO4.600e-2545.90ABC1 family-domain-containing protein n=1 Tax=Scen... [more]
A0A383WHM2_TETOB9.190e-2546.72ABC1 domain-containing protein n=1 Tax=Tetradesmus... [more]
A0A7S3V6U3_9STRA5.450e-2344.26Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1D2ABQ4_AUXPR3.850e-2137.60Uncharacterized protein (Fragment) n=1 Tax=Auxenoc... [more]
A0A5J4XEE2_9CHLO2.700e-2040.98ABC1 domain-containing protein n=1 Tax=Trebouxia s... [more]
A0A2K1IMA9_PHYPA5.090e-2044.72ABC1 domain-containing protein n=2 Tax=Physcomitri... [more]
A0A482SVW2_9ARCH1.770e-1942.59ABC1 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A388MF14_CHABU4.460e-1940.50ABC1 domain-containing protein n=1 Tax=Chara braun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6768contigEcto-sp13_S_contig6768:6020..7378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score228.4
Seed ortholog evalue1.8e-57
Seed eggNOG ortholog2880.D8LLF6
Model size375
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215
Exons3
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
Cds size375
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463930.3385227-CDS-Ecto-sp13_S_contig6768:6019..61011681463930.3385227-CDS-Ecto-sp13_S_contig6768:6019..6101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6768 6020..6101 -
1681463930.3491864-CDS-Ecto-sp13_S_contig6768:6494..66741681463930.3491864-CDS-Ecto-sp13_S_contig6768:6494..6674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6768 6495..6674 -
1681463930.3606577-CDS-Ecto-sp13_S_contig6768:7265..73781681463930.3606577-CDS-Ecto-sp13_S_contig6768:7265..7378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6768 7266..7378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6768.17688.1prot_Ecto-sp13_S_contig6768.17688.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6768 6020..7378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6768.17688.1

>prot_Ecto-sp13_S_contig6768.17688.1 ID=prot_Ecto-sp13_S_contig6768.17688.1|Name=mRNA_Ecto-sp13_S_contig6768.17688.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
CFDTAGVKEYCQRLNSGDMYHLLAAILCGRSWDAIEDTTSGMDGLHTKDI
ETEKGMVRGYVQQYAPEIAMLLSKVDRQMLLLFKTNDCLRRGWGVGFAHI
DRTLGAPINTFVIAAKTCISVLREE
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mRNA from alignment at Ecto-sp13_S_contig6768:6020..7378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6768.17688.1 ID=mRNA_Ecto-sp13_S_contig6768.17688.1|Name=mRNA_Ecto-sp13_S_contig6768.17688.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6768:6020..7378- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTTTGATACTGCAGGGGTAAAGGAATACTGCCAGCGGCTCAACTCCGG CGATATGTATCACCTGCTGGCGGCCATCTTGTGCGGAAGGTCGTGGGACG CAATCGAGGACACGTGCGTATGTGGTGGTTGGTCGTCGTGCCTGACGGAC TTTTTTTTTGTCGTTTGCCCGCCTTGAGAGTACCCGCGGATGTTGCCGGT GTGCTTTCGTGGATTGTGGGCGCGCACGCTCCTGCCCATGCTGCCGAGGA AGCTCCCTTTCTTCTGGTGTGGTGTTGTGCGGCTGTCGTACGGGGGAAAG GCAGGTATATCTTGTTTCGTCGCGTGCCTCTGGGTTGGATGCATTTCGTC GTGTTTGTAGTAGTCCGTGACTGCTGCTGCTTCTGTGTCCGCCATAAGAT CGCGGGCGGGCTTCTCGTGTGTTTCATTGGCCTGTCCAGTTCCCCCCACG TGCAGAGTACCCCTGTCATCTTGCTTGCTCGTCTGCTGGTCTGTTCGCCG CCGGCGCACCTTTGCCTGCGCTGCCTAGCCTTGAGAAACAGCTGGTAACG TTCGCAGCAGCTTTGGGGAAGGGTGTCAATGGACACTTGCTCTCGAATCT CTTCCCCCCTCTCTTGCAGTATACCTCGGGGTGTCCGTTCGCTTGTTCAC GCCCGTGTGCCCCCCCCGTCCCCTCCCATCCGCCCCGCACACGCATGCTC TCAGGACATCCGGGATGGACGGCCTCCACACCAAGGACATCGAGACAGAG AAGGGCATGGTGCGCGGCTACGTGCAGCAGTACGCGCCCGAGATAGCCAT GCTCCTCTCTAAGGTCGACCGGCAGATGCTCCTTCTTTTCAAGACCAACG ACTGCCTCAGGCGCGGATGGGGGGTTGGTTTTGCGTGCCATGTATCCCAG CGATAAACATCGACACACGATCGGGTTTTTGGGGCATCATTTTTCGTTTT GAAGCACACACGTGTGTCAGTTCCACCCCCCCTTCCGAATCAAATGAGGT GCAATCAATACCTGCTCGGGTTCCGATAGACGTTTTTTTGTTAATAGGGT TGTACGTTTCACCCTGCAGCAAGCGCGACTACACAAACACACACTACGTT CGCCACGGGTATACCAAGCTGTTCTCAGGGGCGCGCGCCCGTTGCGACCT GATTCATGCCTTCTGTGCTTTTTACCTTTTTTTATCCTTTGCTTCGATCA TAACCTTGCTCCAATATTTGCCCGCCCGGTTGTTGCTGTCGTTGGGTTGG TTGTGCAATGGTTTCGGATTCACTCAGGCACATTGACAGGACCCTGGGCG CGCCCATCAACACGTTCGTCATCGCCGCCAAGACATGCATTTCCGTACTC CGGGAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6768:6020..7378-

>mRNA_Ecto-sp13_S_contig6768.17688.1 ID=mRNA_Ecto-sp13_S_contig6768.17688.1|Name=mRNA_Ecto-sp13_S_contig6768.17688.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6768:6020..7378- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTTTGATACTGCAGGGGTAAAGGAATACTGCCAGCGGCTCAACTCCGG
CGATATGTATCACCTGCTGGCGGCCATCTTGTGCGGAAGGTCGTGGGACG
CAATCGAGGACACGACATCCGGGATGGACGGCCTCCACACCAAGGACATC
GAGACAGAGAAGGGCATGGTGCGCGGCTACGTGCAGCAGTACGCGCCCGA
GATAGCCATGCTCCTCTCTAAGGTCGACCGGCAGATGCTCCTTCTTTTCA
AGACCAACGACTGCCTCAGGCGCGGATGGGGGGTTGGTTTTGCGCACATT
GACAGGACCCTGGGCGCGCCCATCAACACGTTCGTCATCGCCGCCAAGAC
ATGCATTTCCGTACTCCGGGAAGAG
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