mRNA_Ecto-sp13_S_contig6751.17670.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig6751.17670.1
Unique Name	mRNA_Ecto-sp13_S_contig6751.17670.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: D8LRA2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA2_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 8.100e-19
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1

Query:    1 MDETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRY 135
            MDET+R+GFG LVLRAEAGQLTDSWSERPRSMVALILLLDQFSR+
Sbjct:   78 MDETIRKGFGILVLRAEAGQLTDSWSERPRSMVALILLLDQFSRH 122

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: A0A1Z9LQG8_9CYAN (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1Z9LQG8_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.170e-7
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1

Query:    4 DETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRYTW 141
            D  VR+ FG+LV+RA AG+L + WS  P S +AL+LLLDQFSR  W
Sbjct:   27 DALVRQRFGDLVIRALAGEL-EHWSTEPGSSLALVLLLDQFSRQLW 71

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: A0A1Y2QJU6_9BURK (Uncharacterized protein n=1 Tax=Hydrogenophaga sp. IBVHS2 TaxID=1985170 RepID=A0A1Y2QJU6_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 3.210e-7
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1

Query:    1 MDETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSR 132
            +DE++R+GFG LV +A AG LTD W E PR  +AL++LLDQF+R
Sbjct:   44 VDESIRQGFGPLVAQALAGGLTD-WEEPPRHRLALLVLLDQFTR 86

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: A4CTS0_SYNPV (Uncharacterized protein n=1 Tax=Synechococcus sp. (strain WH7805) TaxID=59931 RepID=A4CTS0_SYNPV)

HSP 1 Score: 50.8 bits (120), Expect = 2.220e-6
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1

Query:    4 DETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRYTW 141
            D+ +R  FG+L   A+AG L D W++   S +AL+LLLDQFSR+ W
Sbjct:   34 DQNIRERFGDLCYSAQAGDLAD-WTQDAASALALVLLLDQFSRHVW 78

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: V4N2S9_9CAUL (Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 TaxID=1282361 RepID=V4N2S9_9CAUL)

HSP 1 Score: 50.8 bits (120), Expect = 2.520e-6
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1

Query:    1 MDETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRY 135
            +D+ VRR FG+L+  A  GQ  D W++ PR  +ALIL+LDQFSR+
Sbjct:   28 LDDEVRRRFGDLLAAARQGQY-DDWAQTPRGRLALILVLDQFSRH 71

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: Q7U6D4_PARMW (Uncharacterized protein n=2 Tax=Parasynechococcus TaxID=2881427 RepID=Q7U6D4_PARMW)

HSP 1 Score: 49.7 bits (117), Expect = 5.650e-6
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1

Query:    4 DETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRYTW 141
            D+ VR+ FG LV +A AG L  SW  +P S +AL+LLLDQFSR  W
Sbjct:   26 DQEVRQRFGALVEQALAGGL-QSWEAQPSSCLALVLLLDQFSRQIW 70

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: A0A1G8Q0T0_9GAMM (Uncharacterized conserved protein, DUF924 family n=2 Tax=Ferrimonas TaxID=44011 RepID=A0A1G8Q0T0_9GAMM)

HSP 1 Score: 50.1 bits (118), Expect = 5.770e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1

Query:    1 MDETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSR 132
            +DE +R  FG+L  RA  G+L D W+E PR  +ALI+LLDQFSR
Sbjct:   36 IDEEIRTHFGDLHARALQGEL-DHWAEEPRGRLALIILLDQFSR 78

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: A0A424T600_9ALTE (DUF924 domain-containing protein n=1 Tax=Alteromonadaceae bacterium TMED101 TaxID=1986649 RepID=A0A424T600_9ALTE)

HSP 1 Score: 49.7 bits (117), Expect = 6.430e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1

Query:    4 DETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRYTW 141
            D  VR  FG+LV +A AG+L  +W   P S +AL+LLLDQFSR  W
Sbjct:   26 DACVRERFGDLVEQAVAGEL-QAWEAEPSSALALVLLLDQFSRQIW 70

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: A0A4U1BEP4_9GAMM (DUF924 domain-containing protein n=1 Tax=Ferrimonas sediminicola TaxID=2569538 RepID=A0A4U1BEP4_9GAMM)

HSP 1 Score: 49.7 bits (117), Expect = 8.020e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1

Query:    1 MDETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSR 132
            +D+ +R  FG L  RA AG+L D W+E PR  +ALI+LLDQFSR
Sbjct:   36 IDQEIRTHFGELHQRALAGEL-DGWAEDPRGRLALIILLDQFSR 78

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BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Match: UPI001CF7F01C (DUF924 domain-containing protein n=7 Tax=Synechococcus TaxID=1129 RepID=UPI001CF7F01C)

HSP 1 Score: 49.3 bits (116), Expect = 8.690e-6
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1

Query:    4 DETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRYTW 141
            D  V   FG LV RA AG L + W++RP S +AL+LLLDQFSR  W
Sbjct:   27 DALVSDRFGALVERALAGDLQE-WADRPSSALALVLLLDQFSRQIW 71

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6751.17670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
D8LRA2_ECTSI	8.100e-19	91.11	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A1Z9LQG8_9CYAN	1.170e-7	58.70	Uncharacterized protein n=2 Tax=Cyanobacteria TaxI...	[more]
A0A1Y2QJU6_9BURK	3.210e-7	59.09	Uncharacterized protein n=1 Tax=Hydrogenophaga sp....	[more]
A4CTS0_SYNPV	2.220e-6	50.00	Uncharacterized protein n=1 Tax=Synechococcus sp. ...	[more]
V4N2S9_9CAUL	2.520e-6	53.33	Uncharacterized protein n=1 Tax=Asticcacaulis sp. ...	[more]
Q7U6D4_PARMW	5.650e-6	56.52	Uncharacterized protein n=2 Tax=Parasynechococcus ...	[more]
A0A1G8Q0T0_9GAMM	5.770e-6	56.82	Uncharacterized conserved protein, DUF924 family n...	[more]
A0A424T600_9ALTE	6.430e-6	54.35	DUF924 domain-containing protein n=1 Tax=Alteromon...	[more]
A0A4U1BEP4_9GAMM	8.020e-6	56.82	DUF924 domain-containing protein n=1 Tax=Ferrimona...	[more]
UPI001CF7F01C	8.690e-6	56.52	DUF924 domain-containing protein n=7 Tax=Synechoco...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6751	contig	Ecto-sp13_S_contig6751:7866..8006 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	85.9
Seed ortholog evalue	5.5e-15
Seed eggNOG ortholog	2880.D8LRA2
Model size	141
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
EggNOG free text desc.	Bacterial protein of unknown function (DUF924)
EggNOG OGs	2D6B9@1,2T1ED@2759
Cds size	141
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463928.3626552-CDS-Ecto-sp13_S_contig6751:7865..8006	1681463928.3626552-CDS-Ecto-sp13_S_contig6751:7865..8006	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6751 7866..8006 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6751.17670.1	prot_Ecto-sp13_S_contig6751.17670.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig6751 7866..8006 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig6751:7866..8006+
coding sequence from alignment at Ecto-sp13_S_contig6751:7866..8006+

protein sequence of mRNA_Ecto-sp13_S_contig6751.17670.1

>prot_Ecto-sp13_S_contig6751.17670.1 ID=prot_Ecto-sp13_S_contig6751.17670.1|Name=mRNA_Ecto-sp13_S_contig6751.17670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MDETVRRGFGNLVLRAEAGQLTDSWSERPRSMVALILLLDQFSRYTW

mRNA from alignment at Ecto-sp13_S_contig6751:7866..8006+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig6751.17670.1 ID=mRNA_Ecto-sp13_S_contig6751.17670.1|Name=mRNA_Ecto-sp13_S_contig6751.17670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6751:7866..8006+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAAACCGTCAGGAGGGGCTTCGGGAACCTGGTGCTCCGGGCGGA
GGCGGGGCAACTGACGGACTCTTGGAGCGAACGACCACGCTCGATGGTGG
CGCTCATTCTTCTTCTTGATCAGTTCTCCAGGTATACATGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6751:7866..8006+

>mRNA_Ecto-sp13_S_contig6751.17670.1 ID=mRNA_Ecto-sp13_S_contig6751.17670.1|Name=mRNA_Ecto-sp13_S_contig6751.17670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6751:7866..8006+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAAACCGTCAGGAGGGGCTTCGGGAACCTGGTGCTCCGGGCGGA
GGCGGGGCAACTGACGGACTCTTGGAGCGAACGACCACGCTCGATGGTGG
CGCTCATTCTTCTTCTTGATCAGTTCTCCAGGTATACATGG