mRNA_Ecto-sp13_S_contig675.17665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig675.17665.1
Unique NamemRNA_Ecto-sp13_S_contig675.17665.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig675.17665.1 vs. uniprot
Match: D7FR33_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR33_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.260e-15
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 ALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPSESAE 111
            ALGE LRLALAQSGVEWIDNR+  EEWPTLKPSESAE
Sbjct:   13 ALGEPLRLALAQSGVEWIDNRLPSEEWPTLKPSESAE 49
[Close]
BLAST of mRNA_Ecto-sp13_S_contig675.17665.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 8.700e-14
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 ALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPS 99
            ALGEQLRLALAQSGVEWIDNRVTFEEWPTLKP+
Sbjct:   13 ALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPT 45
[Close]
BLAST of mRNA_Ecto-sp13_S_contig675.17665.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.050e-10
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 ALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPS 99
            ALGE LRLALAQSGVEWIDNRV  E+WPTLKP+
Sbjct:   13 ALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPT 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig675.17665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR33_ECTSI7.260e-1589.19Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LK37_ECTSI8.700e-1496.97Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LHF0_ECTSI2.050e-1084.85Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig675contigEcto-sp13_S_contig675:2704..2847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.8703923-CDS-Ecto-sp13_S_contig675:2703..28471681463927.8703923-CDS-Ecto-sp13_S_contig675:2703..2847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig675 2704..2847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig675.17665.1prot_Ecto-sp13_S_contig675.17665.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig675 2704..2847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig675.17665.1

>prot_Ecto-sp13_S_contig675.17665.1 ID=prot_Ecto-sp13_S_contig675.17665.1|Name=mRNA_Ecto-sp13_S_contig675.17665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
ALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPSESAERGGSVLLFLF*
back to top

mRNA from alignment at Ecto-sp13_S_contig675:2704..2847-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig675.17665.1 ID=mRNA_Ecto-sp13_S_contig675.17665.1|Name=mRNA_Ecto-sp13_S_contig675.17665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig675:2704..2847- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGGGCGAACAACTCAGACTGGCGCTGGCACAAAGCGGGGTTGAATG
GATCGACAACAGGGTGACGTTTGAGGAGTGGCCCACTCTCAAGCCAAGTG
AGTCTGCTGAGAGAGGTGGTTCTGTTCTTTTGTTTCTATTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig675:2704..2847-

>mRNA_Ecto-sp13_S_contig675.17665.1 ID=mRNA_Ecto-sp13_S_contig675.17665.1|Name=mRNA_Ecto-sp13_S_contig675.17665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig675:2704..2847- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGGGCGAACAACTCAGACTGGCGCTGGCACAAAGCGGGGTTGAATG
GATCGACAACAGGGTGACGTTTGAGGAGTGGCCCACTCTCAAGCCAAGTG
AGTCTGCTGAGAGAGGTGGTTCTGTTCTTTTGTTTCTATTTTGA
back to top