mRNA_Ecto-sp13_S_contig6745.17659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6745.17659.1
Unique NamemRNA_Ecto-sp13_S_contig6745.17659.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6745.17659.1 vs. uniprot
Match: D8LJ37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ37_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 3.980e-67
Identity = 204/257 (79.38%), Postives = 207/257 (80.54%), Query Frame = 2 
Query:  206 MDPSADTTPPVAVSAAEAGSSAVDLAVSSSGGVGEAVAKGETTAVSGTAASAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFACAGVAAAVPGEAVMGEGLGAGKTSHGAGAXXXESPKPKKDEHADKHADLKKNAMKAVKMAYSQYKKHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMMDSIKGMLGSLGMDSDLSLTKMAHSFGLGXXXXXXXXXXXXEDD 976
            MDPSADTTPPVAV AAEA SSAVD AVSSSGGV EAVAKGETTAVSGTAA A+                                      A AGVAAAVPGEAVMGEGLGAGK SHG GA   ESPKPKKDEHADKHADLKKNAMKAVKMAYSQYKKHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMMDSIKGMLGSLGMDSD+SL+KMAHSFGLGXXXXXXXXXXX EDD
Sbjct:    1 MDPSADTTPPVAVGAAEAASSAVDPAVSSSGGVAEAVAKGETTAVSGTAAPAMVASSPATGSEPVADAAVTPGGTTSSVPVGTSPAHKGDGAGAGVAAAVPGEAVMGEGLGAGKMSHGVGAAAAESPKPKKDEHADKHADLKKNAMKAVKMAYSQYKKHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMMDSIKGMLGSLGMDSDISLSKMAHSFGLGXXXXXXXXXXXAEDD 257
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6745.17659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ37_ECTSI3.980e-6779.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6745contigEcto-sp13_S_contig6745:239..3390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size979
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_004600.1
Cds size774
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.3849595-CDS-Ecto-sp13_S_contig6745:238..3671681463927.3849595-CDS-Ecto-sp13_S_contig6745:238..367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6745 239..367 -
1681463927.3971872-CDS-Ecto-sp13_S_contig6745:906..10901681463927.3971872-CDS-Ecto-sp13_S_contig6745:906..1090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6745 907..1090 -
1681463927.4063454-CDS-Ecto-sp13_S_contig6745:2724..31851681463927.4063454-CDS-Ecto-sp13_S_contig6745:2724..3185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6745 2725..3185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.420327-UTR-Ecto-sp13_S_contig6745:3185..33901681463927.420327-UTR-Ecto-sp13_S_contig6745:3185..3390Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6745 3186..3390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6745.17659.1prot_Ecto-sp13_S_contig6745.17659.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6745 239..3185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6745.17659.1

>prot_Ecto-sp13_S_contig6745.17659.1 ID=prot_Ecto-sp13_S_contig6745.17659.1|Name=mRNA_Ecto-sp13_S_contig6745.17659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
MDPSADTTPPVAVSAAEAGSSAVDLAVSSSGGVGEAVAKGETTAVSGTAA
SAVVASAPATGSEPVADAAATPGGTTSSVPVGMSPAHGGDFACAGVAAAV
PGEAVMGEGLGAGKTSHGAGAAAAESPKPKKDEHADKHADLKKNAMKAVK
MAYSQYKKHKKKKKKKKKYGSSNHGSSSSGGGSHAVSDIMSGIGGGDGGE
SSSSSSSDDDGDMMDSIKGMLGSLGMDSDLSLTKMAHSFGLGGDGSSSSS
SSEAEDD*
back to top

mRNA from alignment at Ecto-sp13_S_contig6745:239..3390-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6745.17659.1 ID=mRNA_Ecto-sp13_S_contig6745.17659.1|Name=mRNA_Ecto-sp13_S_contig6745.17659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6745:239..3390- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGTAGACATTTTATAGAAAGAGGCGTGCTGGCGTGCTGGCTTTCACGG
TGCCGGCGTACCGGCTGGCAGGCCGAAAGGTTGGTTGACACATCTTTTTT
CAGATAAGCATCCAGCAGCAGCTGAGCGGGGCAGCCTCCAATAGCTAATT
CTTCTTGTATAGGCGAGAGGGGGGGTACATACGGTAGATATACGTTGAAA
AAACAATGGACCCATCAGCGGACACCACGCCGCCGGTAGCCGTGAGCGCG
GCCGAAGCTGGATCGTCGGCTGTTGATCTTGCTGTGAGTAGCAGCGGCGG
TGTGGGCGAGGCTGTGGCCAAGGGCGAGACTACTGCTGTGAGTGGGACTG
CTGCTTCAGCAGTGGTTGCGTCGGCGCCAGCCACTGGTAGCGAGCCCGTC
GCTGATGCTGCAGCGACACCAGGTGGAACAACATCTTCGGTTCCAGTCGG
AATGTCACCTGCCCATGGAGGCGACTTTGCGTGCGCCGGGGTCGCTGCAG
CTGTCCCCGGCGAAGCTGTGATGGGAGAAGGGCTGGGCGCCGGGAAGACG
TCTCACGGCGCTGGTGCTGCCGCCGCTGAGAGCCCTAAGCCCAAGAAGGA
CGAGCATGCCGACAAGCACGCAGACCTCAAGAAAAACGCCATGAAAGCGG
TGAAGATGGCTTACAGGTACGCAAAGGTGGAAAGATTTACATCGTATCTC
GGGGTCGGGGGTTCGTTACTCCTCACGCGCTCATGAAAGTGAGTTGCGCC
TCAGGATATATTGCTTGTCTTACCGTTGCATATGCACCGCATGAGAAACC
TCATCACAACTGGCTTCGTGTGGGTTTGACGTTTGACATCGCCAAGAGAT
TGCCCAAGGAAAAGTCGGCGATTTTTTATTCTTGGTTGCAGATGCAGAGT
AAGCGGTGTGCTGCCGCCTGGTATGCGCGCAGTGCAAAGATTCTCGTACA
TCAAAAGCAAGCGTATCTTTCCCTCGCAGTCATTCCATACTAACACAAAC
ATCAACAACAGCAGGAAGTTTGCAGTCTTTGTAGGTGATTTATTATGCCA
CTGCGCGAGTGTGCCAGACTCCGGTTGTTGTGAGTAAGTGAGCGTCTGGC
GATCATGAGAACACAGCCTCCTGTTCTTTAAATAAGTGAGGGTTGATGCT
GATGCTTGTTTTTCTGCCGCTACGGCAGTAATGGCTGCTCTGGTCAATAC
CGTTGTGCCTCTCTGTCGTGATGGGAACTGGAGGAACTGCAGCACCATCA
CCAGCAGCAGCGGGCGTGTTGCTTTAATGTCCCTCAAGCCCCTCCTCCTC
CGTGTGCTGTGTTTGCCGAGATGGCGAGTGGTTGCGTCTGCGGTACCCCT
TTTCAAATGTGTCGCCAAATACCGAAGGCATCAAACCCACTGCGGAGTTA
CGCTTTGCTCATAGTTCTCATATACCATAGGTTGCATGACGATACCACAC
CCCCTGGACTGTTGTTCATTCAAATCAGTGGCGGTGCCGAAAATTGTGGC
ATTGAATCTGTTTCGTCGAGAGCTTTCCGAAAACGTTTCATTTGGTTTTG
GCATCCTGTATATCGTGGAGCACTTTCGTCGAGCTTAGAAAATCCGTCCA
GGGGATGCGGTATCTCACGTCATGCGACCTACGGTAGTCAAGTGTCGCCA
ACTATCGACGGCGAGGCTCTGCCAGGATGAAATCGCCTGTTCTCTCTCTG
TTCTATGCCCCCCCCCCAACCCCCCCATTTGGAAACGCTTGCCGGTGTGA
GTACAACTACAACTAGCATGTACAGCACCAGTTGGGGATGGCGGCAACTA
CCCGGTGTGAGAATTTCGTGATGCACTTCGCAACCAGTCTTCGGCTGGGT
TTTTGCTAGGTTTTCGCGTATCGTTTTGGAGGAAACCCAGAAAACATAAA
CGAGGAGATCGACTTCATGTCGACGAGAAAAAGAGACGACTGAACCGTTC
TCCCAACAAAACATAAGATATTGCCGCAGGAGGAAAGGTGGGGCTGAAAA
ACCGTGCTAACATAATAATAAAGCACGGTAAGCCATACACACACCCCGGA
TGTTGTGTAGACTGGTGGCTAGTTCGGTGGGAAGAAACATGCGACATAGA
CACACCACTTACATAACAGATGGGTTGTGCTTGCAATGCTTGCAACAGCA
CGCAATCCTCTCCAGCTGTCCCTCCGTAATCGATAAAAGTCAAGCGCAGT
CCAAACATTGCGTACACGCTTTGCTGGCCGCACCCTCTCGGTTGAAAACG
GCCCCATTTACAAAACCCATCCCCTTGTTGACCGTGCTACTCCGTCACAG
CCAGTACAAGAAGCACAAGAAGAAGAAGAAGAAGAAGAAAAAGTACGGTA
GCAGTAACCACGGCTCATCCTCCTCCGGCGGCGGTTCCCACGCCGTGAGC
GATATCATGAGCGGCATAGGTGGGGGCGACGGTGGCGAATCGAGCTCCTC
GTCGAGTTCGGATGACGATGGCGACATGATGGACGTGAGTGCCGCCGACT
ACGGAAAAGTTGGCCATCCTGGGCTCGCGGGCGATTTACTTTGTCGCGAG
TAGTGGGGTGGGCCATCGCCCTCTTTTCAGCACATGTGCGAGAAACCCAA
GCGAATAAGTACTCTGTTGGCTTTGTTTTTTATCGTTCGACTGGTTTTTC
CGAGGCCCGTCAAGGTTTTGCCAAGTGCATGAGCACGCACGTAGAAATGA
TAGTCCGAACCCGCAGCTGCTACGGTAAACATACGCAGTTCATGGGCGAC
TAGTTTTTTTATGTATTTTCCCTGGACTAACGCGACCCGCCGGTTCGCTC
ATGTTCCCGTGCGTATCCTCGTCACTTGCTTCGTCTGTCCTGATCTACAC
ACCACCGTCCCGGGGGGGCACATGCTGGGACGGACACGCGAACGCATTCC
CCGGAACGCCCGACCGGCGTGCGTTGGCGGACGCAACCCCTCCGCGGTGA
ATGGTGGATCAACTAACCCAACCCAACTCAACGCTTTTGCGATGGAACAC
TACCGATGATAAACACACATAAGTCAATCAAAGGAATGTTGGGATCTCTC
GGAATGGACTCTGATTTATCGCTCACGAAGATGGCGCACTCGTTTGGGCT
CGGAGGTGATGGGTCCAGCTCGTCTTCGTCCTCGGAAGCGGAGGATGACT
GA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6745:239..3390-

>mRNA_Ecto-sp13_S_contig6745.17659.1 ID=mRNA_Ecto-sp13_S_contig6745.17659.1|Name=mRNA_Ecto-sp13_S_contig6745.17659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6745:239..3390- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCATCAGCGGACACCACGCCGCCGGTAGCCGTGAGCGCGGCCGA
AGCTGGATCGTCGGCTGTTGATCTTGCTGTGAGTAGCAGCGGCGGTGTGG
GCGAGGCTGTGGCCAAGGGCGAGACTACTGCTGTGAGTGGGACTGCTGCT
TCAGCAGTGGTTGCGTCGGCGCCAGCCACTGGTAGCGAGCCCGTCGCTGA
TGCTGCAGCGACACCAGGTGGAACAACATCTTCGGTTCCAGTCGGAATGT
CACCTGCCCATGGAGGCGACTTTGCGTGCGCCGGGGTCGCTGCAGCTGTC
CCCGGCGAAGCTGTGATGGGAGAAGGGCTGGGCGCCGGGAAGACGTCTCA
CGGCGCTGGTGCTGCCGCCGCTGAGAGCCCTAAGCCCAAGAAGGACGAGC
ATGCCGACAAGCACGCAGACCTCAAGAAAAACGCCATGAAAGCGGTGAAG
ATGGCTTACAGCCAGTACAAGAAGCACAAGAAGAAGAAGAAGAAGAAGAA
AAAGTACGGTAGCAGTAACCACGGCTCATCCTCCTCCGGCGGCGGTTCCC
ACGCCGTGAGCGATATCATGAGCGGCATAGGTGGGGGCGACGGTGGCGAA
TCGAGCTCCTCGTCGAGTTCGGATGACGATGGCGACATGATGGACTCAAT
CAAAGGAATGTTGGGATCTCTCGGAATGGACTCTGATTTATCGCTCACGA
AGATGGCGCACTCGTTTGGGCTCGGAGGTGATGGGTCCAGCTCGTCTTCG
TCCTCGGAAGCGGAGGATGACTGA
back to top