mRNA_Ecto-sp13_S_contig67402.17655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig67402.17655.1
Unique NamemRNA_Ecto-sp13_S_contig67402.17655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: D8LM32_ECTSI (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM32_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.120e-26
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQKLKST 162
            PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATF+GLTLMKSARKQKLKS+
Sbjct:   32 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFIGLTLMKSARKQKLKSS 85
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: A0A0P1AD60_PLAHL (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AD60_PLAHL)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-10
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQK 150
            PF D  HP+QDFFLP  YAI++P VL++LL T  ATF+G+ +++S  K+K
Sbjct:   31 PFFDEGHPIQDFFLPYHYAISVPAVLLVLLFTGAATFIGMVMIESREKKK 80
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: H3HBK0_PHYRM (Dolichol phosphate-mannose biosynthesis regulatory protein n=14 Tax=Phytophthora TaxID=4783 RepID=H3HBK0_PHYRM)

HSP 1 Score: 59.7 bits (143), Expect = 1.930e-10
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQK 150
            PF+D  HP+Q FFLP  YAI+IP VL++LL +  ATF+G+ ++KS +K K
Sbjct:   31 PFIDEDHPIQQFFLPYHYAISIPAVLLVLLFSGAATFIGMVMIKSQKKTK 80
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: A0A0W8DZJ5_PHYNI (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DZJ5_PHYNI)

HSP 1 Score: 60.1 bits (144), Expect = 2.710e-10
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQK 150
            PF+D  HP+Q FFLP  YAI+IP VL++LL +  ATF+G+ ++KS +K+K
Sbjct:   60 PFIDEEHPIQQFFLPYYYAISIPAVLLVLLFSGAATFIGMVMIKSQKKKK 109
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: A0A6A3T4G2_9STRA (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T4G2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.520e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQK 150
            PF+D  H VQ FFLP  YAI IP VL++LL T  ATF+G+ ++KS +K+K
Sbjct:   31 PFIDEGHVVQQFFLPYHYAITIPAVLLVLLFTGAATFIGMVMIKSQKKKK 80
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: A0A0B2X1L5_METAS (Dolichol phosphate-mannose biosynthesis regulatory protein n=5 Tax=Metarhizium TaxID=5529 RepID=A0A0B2X1L5_METAS)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-9
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQKLKS 159
            PFVD  HP+QDFFL RK+AI IP +L++L   +V +F+GL +++S RK+  K+
Sbjct:   20 PFVDKDHPLQDFFLHRKWAIRIPVILILLGSAVVGSFLGLVMIRSNRKKAAKA 72
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: D0NPA5_PHYIT (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPA5_PHYIT)

HSP 1 Score: 57.8 bits (138), Expect = 2.550e-9
Identity = 25/50 (50.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQK 150
            PF++ +HP++ FFLP  YAI+IP VL++LL +  ATF+G+ ++KS +K+K
Sbjct:   67 PFIEENHPIRQFFLPYHYAISIPAVLLVLLFSGAATFIGMVMIKSQKKKK 116
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: A0A8K0J9K7_9HYPO (Uncharacterized protein n=1 Tax=Claviceps africana TaxID=83212 RepID=A0A8K0J9K7_9HYPO)

HSP 1 Score: 56.6 bits (135), Expect = 3.030e-9
Identity = 26/53 (49.06%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQKLKS 159
            PFVD  HP+Q+FFLPR++AI IP +LV+L   +V +F+G+ +++S RK+  K+
Sbjct:   20 PFVDHDHPLQNFFLPRQWAIRIPVMLVLLASAVVGSFLGMVMVRSNRKKAAKA 72
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: A0A1E3NNJ8_9ASCO (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Pichia membranifaciens NRRL Y-2026 TaxID=763406 RepID=A0A1E3NNJ8_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 3.180e-9
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQKLK 156
            PF+D    +Q+FFLPR YAIA+P V +I+ +++VATFVGL ++KS +K+K K
Sbjct:   29 PFLDDDSIIQNFFLPRYYAIALPVVALIVGISIVATFVGLVIVKSVQKKKGK 80
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BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Match: A0A662WR18_9STRA (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WR18_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.750e-9
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQK 150
            PFVD  H +  FFLP  YAI+IP VL++LL T  ATF+G+ ++KS +K+K
Sbjct:   38 PFVDEDHAIHQFFLPYHYAISIPAVLLVLLFTGSATFIGMVMIKSQKKKK 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig67402.17655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM32_ECTSI2.120e-2696.30Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A0P1AD60_PLAHL1.360e-1054.00Dolichol phosphate-mannose biosynthesis regulatory... [more]
H3HBK0_PHYRM1.930e-1054.00Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A0W8DZJ5_PHYNI2.710e-1054.00Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A6A3T4G2_9STRA5.520e-1056.00Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A0B2X1L5_METAS2.130e-950.94Dolichol phosphate-mannose biosynthesis regulatory... [more]
D0NPA5_PHYIT2.550e-950.00Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A8K0J9K7_9HYPO3.030e-949.06Uncharacterized protein n=1 Tax=Claviceps africana... [more]
A0A1E3NNJ8_9ASCO3.180e-953.85Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A662WR18_9STRA3.750e-954.00Dolichol phosphate-mannose biosynthesis regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig67402contigEcto-sp13_S_contig67402:17..181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score100.9
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog2880.D8LM32
Preferred nameDPM2
Model size165
KEGG rclassRC00005
KEGG koko:K09658
KEGG ReactionR01009,R05916
KEGG Pathwayko00510,ko00563,ko01100,map00510,map00563,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0000030,GO:0000506,GO:0003674,GO:0003824,GO:0004582,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006720,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016093,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0019348,GO:0019538,GO:0019637,GO:0030234,GO:0031224,GO:0031501,GO:0031647,GO:0031984,GO:0032991,GO:0033185,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0048471,GO:0050790,GO:0065007,GO:0065008,GO:0065009,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0097713,GO:0098772,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1902494,GO:1903509,GO:1990234
Exons1
EggNOG free text desc.dolichol metabolic process
EggNOG OGsKOG3488@1,KOG3488@2759
Ec32 ortholog descriptionDolichol phosphate-mannose biosynthesis regulatory protein
Ec32 orthologEc-14_002700.1
Cds size165
COG Functional cat.T
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463927.116615-CDS-Ecto-sp13_S_contig67402:16..1811681463927.116615-CDS-Ecto-sp13_S_contig67402:16..181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig67402 17..181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig67402.17655.1prot_Ecto-sp13_S_contig67402.17655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig67402 17..181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig67402.17655.1

>prot_Ecto-sp13_S_contig67402.17655.1 ID=prot_Ecto-sp13_S_contig67402.17655.1|Name=mRNA_Ecto-sp13_S_contig67402.17655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
PFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFVGLTLMKSARKQK
LKST*
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mRNA from alignment at Ecto-sp13_S_contig67402:17..181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig67402.17655.1 ID=mRNA_Ecto-sp13_S_contig67402.17655.1|Name=mRNA_Ecto-sp13_S_contig67402.17655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67402:17..181+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTTCGTGGACACTTCGCACCCGGTGCAGGACTTTTTTCTGCCTCGGAA
GTACGCTATCGCCATCCCCACCGTGCTTGTGATCCTCCTCGTCACGCTCG
TCGCAACGTTTGTCGGCCTGACCCTCATGAAGTCCGCCAGAAAGCAGAAG
CTGAAGTCCACCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig67402:17..181+

>mRNA_Ecto-sp13_S_contig67402.17655.1 ID=mRNA_Ecto-sp13_S_contig67402.17655.1|Name=mRNA_Ecto-sp13_S_contig67402.17655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig67402:17..181+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTTCGTGGACACTTCGCACCCGGTGCAGGACTTTTTTCTGCCTCGGAA
GTACGCTATCGCCATCCCCACCGTGCTTGTGATCCTCCTCGTCACGCTCG
TCGCAACGTTTGTCGGCCTGACCCTCATGAAGTCCGCCAGAAAGCAGAAG
CTGAAGTCCACCTGA
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