mRNA_Ecto-sp13_S_contig674.17652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig674.17652.1
Unique NamemRNA_Ecto-sp13_S_contig674.17652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig674.17652.1 vs. uniprot
Match: D8LEP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP2_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 9.180e-77
Identity = 165/198 (83.33%), Postives = 168/198 (84.85%), Query Frame = 3 
Query: 1017 GDRADKGQDAAAXXXXXXXXXXXXXEMIRIRAGGGAGGEGTTDLVALSRSTLESHLRLFLASQQRVGALEEEVAGARREASAGAGAKQALSLHVSEG--GTDAIVDKVAGASAQHRFPHGATLTGTLTFAELPAVAPAAGGGDFVLDGRGSAGRAAVGKGGLEIMRAERKQEGWGSGASGIAGEVQRPSILHQKMDTG 1604
            GD ADKGQ     XXXXXXXXXXXX MIRIRAGGGAGGE TTDLVALSRSTLESHLRLFL SQQRVGALEEE+A ARREASAGAGAK    LHVSEG  GTDAIVDKVAGA AQ RF HGATLTG  T AELPAVAPAAGGGDFV DGRGSAGRAAVGKGGLEIMRAE+KQEGWGS ASGIAGE+Q P ILH K   G
Sbjct:   21 GDGADKGQ----AXXXXXXXXXXXXXMIRIRAGGGAGGEDTTDLVALSRSTLESHLRLFLTSQQRVGALEEEIAAARREASAGAGAKP---LHVSEGEGGTDAIVDKVAGACAQQRFLHGATLTGIPTVAELPAVAPAAGGGDFVRDGRGSAGRAAVGKGGLEIMRAEKKQEGWGSAASGIAGELQHPFILHGKWTPG 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig674.17652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEP2_ECTSI9.180e-7783.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig674contigEcto-sp13_S_contig674:8152..11309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1953
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000620.1
Cds size1146
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.8871145-UTR-Ecto-sp13_S_contig674:8151..86991681463926.8871145-UTR-Ecto-sp13_S_contig674:8151..8699Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig674 8152..8699 +
1681463926.9294207-UTR-Ecto-sp13_S_contig674:11050..113091681463926.9294207-UTR-Ecto-sp13_S_contig674:11050..11309Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig674 11051..11309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463926.8991766-CDS-Ecto-sp13_S_contig674:8699..97651681463926.8991766-CDS-Ecto-sp13_S_contig674:8699..9765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig674 8700..9765 +
1681463926.9137583-CDS-Ecto-sp13_S_contig674:10970..110501681463926.9137583-CDS-Ecto-sp13_S_contig674:10970..11050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig674 10971..11050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig674.17652.1prot_Ecto-sp13_S_contig674.17652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig674 8700..11050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig674.17652.1

>prot_Ecto-sp13_S_contig674.17652.1 ID=prot_Ecto-sp13_S_contig674.17652.1|Name=mRNA_Ecto-sp13_S_contig674.17652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp
MEPPFTRRFVVKTHRPEAPDDQKQFIERLQQTVVFKISQILNTMINRPQH
TGIDGTGETSPNPFEERSTETSGRANKDERIQAINLEILEEIQQTFSKVA
AAQNDKVFQAEGLLKEAQRKQNILEKVIEEKDREIERRLPPDGIDVPTET
QQSLDFGDRADKGQDAAAAAAAAAAAAASKGEMIRIRAGGGAGGEGTTDL
VALSRSTLESHLRLFLASQQRVGALEEEVAGARREASAGAGAKQALSLHV
SEGGTDAIVDKVAGASAQHRFPHGATLTGTLTFAELPAVAPAAGGGDFVL
DGRGSAGRAAVGKGGLEIMRAERKQEGWGSGASGIAGEVQRPSILHQKMD
TGVEEIRATPVAEAAAETAGCEPARWRRGGV*
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mRNA from alignment at Ecto-sp13_S_contig674:8152..11309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig674.17652.1 ID=mRNA_Ecto-sp13_S_contig674.17652.1|Name=mRNA_Ecto-sp13_S_contig674.17652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig674:8152..11309+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCAAGGCGAACCCTGGCCAGACGCCAGGCGAACACCTGGCTTTTTC
CAGATCCCGCGGGGCATCAAGGATACAGCTTCATCTGGGGATCGATTGTA
AAGAGCGCGTGCTTTCACTTTCACGGGTGGGTACGGCGGGCGCACGAACA
AATTATAGACCCGCGGAGGGATCAACCGCCGTTGTGCACAGATTGTCATG
AGCCGCGCGGACCAGCATCAACGTACGGCAGGGCAGTAGCCAACGAGGCA
GCCGCTTTGGCAACAGAATTCGCGGTCGCAGCTCTTGGGCCTGAACAGTT
CGGGCAGCGAGAACACCGTTAGTGCACCCCCATTCGGAGGAGGAACGATC
ACTCCTGCATCTACCCCACGCTCGGAGCAAGGTGACGGGTGGAACCGAGG
CGGCGGCGCATCGACCGACGGAGTGATCGACGTTCTACAGCAGAAGCAGA
AAAACAAGCAGCGGCAGCGGCAGTGGCAGCGGCAGCAGCAGCAAAAACAG
CAACGGCGACAGCAGCAACCGCAACAAGAACAACCTTTGCAGCAGCAGAT
GGAACCGCCGTTCACGAGGAGGTTCGTTGTCAAAACGCACAGGCCTGAAG
CCCCGGACGACCAGAAGCAATTCATCGAACGCCTGCAACAGACGGTGGTC
TTCAAGATAAGCCAGATATTGAACACAATGATCAACCGTCCGCAGCACAC
CGGCATCGACGGCACTGGTGAGACCTCCCCCAACCCCTTTGAGGAACGCT
CGACAGAAACTAGCGGTCGGGCAAACAAAGACGAACGAATCCAAGCCATC
AACCTGGAAATTTTGGAAGAAATCCAGCAGACCTTCAGCAAGGTTGCCGC
TGCGCAGAACGACAAGGTTTTCCAGGCCGAGGGGCTGCTGAAGGAGGCCC
AGCGCAAGCAAAACATTCTCGAGAAGGTCATCGAGGAGAAGGACAGGGAG
ATCGAGCGGAGGTTGCCCCCTGACGGCATCGATGTCCCCACCGAGACGCA
GCAGTCCCTCGACTTCGGCGATCGCGCCGACAAAGGGCAGGACGCCGCCG
CCGCCGCCGCCGCCGCGGCCGCGGCCGCTGCATCGAAGGGCGAAATGATC
AGAATCAGAGCAGGCGGAGGAGCTGGGGGAGAAGGCACTACCGACCTCGT
CGCTCTGTCTCGGTCCACCCTGGAGTCGCACCTCAGGTTGTTCCTCGCGA
GCCAGCAGCGGGTGGGCGCCTTAGAGGAAGAGGTTGCGGGCGCTAGGCGG
GAGGCCTCAGCCGGTGCGGGCGCCAAACAAGCTCTGTCACTTCACGTCAG
CGAAGGAGGGACGGATGCCATCGTGGACAAAGTGGCCGGCGCTAGCGCCC
AGCATCGGTTCCCCCACGGCGCCACCCTCACCGGCACCCTGACCTTTGCC
GAGCTTCCGGCTGTCGCTCCCGCCGCCGGCGGTGGCGACTTTGTTCTCGA
TGGCCGCGGTAGCGCCGGCCGTGCTGCCGTTGGGAAGGGCGGGCTTGAAA
TCATGCGAGCCGAGAGGAAGCAAGAGGGATGGGGGTCGGGAGCAAGCGGT
ATCGCCGGAGAAGTACAGCGTCCTTCCATCCTTCACCAGAAAATGGACAC
TGGGGTGGAGGAGAGTAAATAGTTTTAAGAAAATACATTTTCATATGCAC
ACAATCGGAGTTAGACTAACACCCGTTCGAAAAAAATACCAGAGTCGAAG
GGAATGTTGTGCGCAAAATTTGTCGTTGTTCTTGTTGTCGTCTTGGCGGT
AGAAAACCGTTCCGGGGTCTGCTCAGCATGCCCTTGAGCATCCGTAGCGG
TCCACCTGACGCCGACTTCCTTCCGCGGTTGCAGGCCAATAATAAAAAAA
GTGTTCACACTTTGAAATGTACAAAAAAAGTGAAACACAGAGGACCCCCC
CACAAGACAAACTTTGCTAGCGGTTGTCACACGGTTCATGTACCGTTTAC
CTAGATTAGAAGACCAACGAAGTGCTGCTGTTGCTGCCGGAATGGTGTGC
CGTTACGGTTCTGGTCCTAGGGCGGGTGTGTTTTGGATGCTAGCGGATGA
CACTTTCTCGACCCGCGTTTCGATCCTACGGTGCTTGCCGGTAGGCGCAG
TGTGTTAAGCCTCGACGCAACCAAGTTGAAGCTACTGGGCAGTCTCAACA
AAGTCGGTTTGTGTTAAAATCTGAGCAGAGGGTATGACAAAAGCGCGCAC
TGGCCAGTGTTGAAACCCCATGCGCGCAAAGCCGTTCGGGATGAAACCGT
GCACACGTACTGGTATCTCGACACACAGCAGGCCTGAGCGTCAAAGAGAG
AGGCGGAGGTGTTGCAGTGGACGCGCGGAGAACTCTTGATACTTCTCCCA
TTCACCAGAAAATCGTGTAGGACGCTGCACTCACCGTATGTAGAGTCTGG
CAGAATCGTTTTCCAGAGTAATTCTCCTAAGGAAGTCAGATTCACAGTCT
ATCTCTGTTGGCAATACTGGTGAACCATGCTGCAATCCTTCGTGAGATCT
AGCTCGTCCGTTCAGAAGACACCATTTGAAGGACCAAACTACTCTCTGTA
TCAGCGCCAGCGGGTATGCTGCTGTTTTTGCGCGCTTCGTGCGTAAAACT
TGCACGCGCATGAAAAGGTCATACGCATATCCTTCCGGTCCCCCTTACCC
CCCCCCTCACCATATTGTCTCCTCGAGCTTCCGCTCCTTGTTCATCGCTT
TCTCAACGCAAGCGCGTACGCACGCCCACAAGGCACCCTTAAGCGCCTCG
AGCTGGCGTTATCTTATTTTTTCGTCCTGTCGGTCAATGCCTCTGTACTC
ATTCGTCGGCTCAACAGAGTAAGGGCAACACCTGTGGCGGAGGCGGCGGC
GGAGACGGCGGGGTGCGAGCCAGCCAGATGGCGACGAGGTGGGGTGTAGC
CGACCCGCAGAGGGTCGCAAAGCAGGGTGGCGGCGATGGCGCGCGTGTGG
CCACCACCAACATTTTTCGCATCAGCGGTAGCCAGTATCAGCACAAGAAC
CACTCCCCCGAACAGCAGCACCTCTATGAGCAGATCCAGCAGCACCGAAG
GCCGGCTGTGGAGAAGCTGCCGACGAGGAAAAACGCCGACGTCGACGACA
ACAACCACTGGAATAGCCCCAGGCCCTCCGGCAACAACAACAACCGTAGC
AAGTGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig674:8152..11309+

>mRNA_Ecto-sp13_S_contig674.17652.1 ID=mRNA_Ecto-sp13_S_contig674.17652.1|Name=mRNA_Ecto-sp13_S_contig674.17652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig674:8152..11309+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCGCCGTTCACGAGGAGGTTCGTTGTCAAAACGCACAGGCCTGA
AGCCCCGGACGACCAGAAGCAATTCATCGAACGCCTGCAACAGACGGTGG
TCTTCAAGATAAGCCAGATATTGAACACAATGATCAACCGTCCGCAGCAC
ACCGGCATCGACGGCACTGGTGAGACCTCCCCCAACCCCTTTGAGGAACG
CTCGACAGAAACTAGCGGTCGGGCAAACAAAGACGAACGAATCCAAGCCA
TCAACCTGGAAATTTTGGAAGAAATCCAGCAGACCTTCAGCAAGGTTGCC
GCTGCGCAGAACGACAAGGTTTTCCAGGCCGAGGGGCTGCTGAAGGAGGC
CCAGCGCAAGCAAAACATTCTCGAGAAGGTCATCGAGGAGAAGGACAGGG
AGATCGAGCGGAGGTTGCCCCCTGACGGCATCGATGTCCCCACCGAGACG
CAGCAGTCCCTCGACTTCGGCGATCGCGCCGACAAAGGGCAGGACGCCGC
CGCCGCCGCCGCCGCCGCGGCCGCGGCCGCTGCATCGAAGGGCGAAATGA
TCAGAATCAGAGCAGGCGGAGGAGCTGGGGGAGAAGGCACTACCGACCTC
GTCGCTCTGTCTCGGTCCACCCTGGAGTCGCACCTCAGGTTGTTCCTCGC
GAGCCAGCAGCGGGTGGGCGCCTTAGAGGAAGAGGTTGCGGGCGCTAGGC
GGGAGGCCTCAGCCGGTGCGGGCGCCAAACAAGCTCTGTCACTTCACGTC
AGCGAAGGAGGGACGGATGCCATCGTGGACAAAGTGGCCGGCGCTAGCGC
CCAGCATCGGTTCCCCCACGGCGCCACCCTCACCGGCACCCTGACCTTTG
CCGAGCTTCCGGCTGTCGCTCCCGCCGCCGGCGGTGGCGACTTTGTTCTC
GATGGCCGCGGTAGCGCCGGCCGTGCTGCCGTTGGGAAGGGCGGGCTTGA
AATCATGCGAGCCGAGAGGAAGCAAGAGGGATGGGGGTCGGGAGCAAGCG
GTATCGCCGGAGAAGTACAGCGTCCTTCCATCCTTCACCAGAAAATGGAC
ACTGGGGTGGAGGAGATAAGGGCAACACCTGTGGCGGAGGCGGCGGCGGA
GACGGCGGGGTGCGAGCCAGCCAGATGGCGACGAGGTGGGGTGTAG
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