mRNA_Ecto-sp13_S_contig6728.17629.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6728.17629.1
Unique NamemRNA_Ecto-sp13_S_contig6728.17629.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: D7FLL6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL6_ECTSI)

HSP 1 Score: 486 bits (1252), Expect = 3.400e-173
Identity = 260/261 (99.62%), Postives = 261/261 (100.00%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 783
            MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVF+SYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF
Sbjct:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFESYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 261
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: A0A836CEZ0_9STRA (ATP synthase subunit D-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ0_9STRA)

HSP 1 Score: 330 bits (845), Expect = 1.950e-111
Identity = 176/206 (85.44%), Postives = 188/206 (91.26%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK 618
            MSAQ VAPTRMAL +YKGKL+GAKKGYELLKKKSDALKARFR IAKQI+ELK+ MREDA+ AFFSLTQA QY AGDFR KVLDTP PAA+R R+RTDNVAGVKLP+F  Y TG E  DNIGL+GGGQKV QCR+KYK WVENL+KLASLQTSF+TMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK
Sbjct:    1 MSAQ-VAPTRMALTLYKGKLVGAKKGYELLKKKSDALKARFRAIAKQIYELKKQMREDASMAFFSLTQA-QYAAGDFRSKVLDTPHPAAIRVRSRTDNVAGVKLPMFTPYGTGVEVHDNIGLSGGGQKVAQCREKYKQWVENLVKLASLQTSFITMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK 204
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: A0A7S2V1A2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1A2_9STRA)

HSP 1 Score: 258 bits (660), Expect = 1.930e-83
Identity = 148/265 (55.85%), Postives = 187/265 (70.57%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLD-TPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAA---REQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 783
            MS   VAPTRMAL M+KGK +GAKKG+ELLKKKSDALKAR R+I K+I+  K+ + + A TAFFSLTQA QY AGDFR +V+D     A++R   R DNVAGVKLP+F  YE  +E K+N+GLAGGG+ +  CR K+KA++ +L++L+SLQTS++TMDEALKVTNRR NALENVTIPR+EG++SYI RELDELEREDF+RLK+V  KK+E A     + +L  E+A                        ML  +D  +  DVYF
Sbjct:    1 MSGANVAPTRMALTMFKGKRVGAKKGFELLKKKSDALKARHREIMKEIYRHKKNIADQAQTAFFSLTQA-QYAAGDFRTQVIDGCGNSASMRVHNRIDNVAGVKLPIFMEYEASTEQKENLGLAGGGRAIANCRAKFKAFLVSLVQLSSLQTSYITMDEALKVTNRRCNALENVTIPRIEGILSYIERELDELEREDFSRLKRVTSKKKEDAEDQPEQDSLDKEMA------------------------MLSNYDVADDNDVYF 240
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: F0YKB3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKB3_AURAN)

HSP 1 Score: 255 bits (651), Expect = 4.780e-82
Identity = 139/211 (65.88%), Postives = 171/211 (81.04%), Query Frame = 1 
Query:    7 AQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEK--KREAA 633
            A QV PTRMALQ YKGK  GA KG++LLKKK+DALKARFR IAK+I++ K  M E  +TA+FSLT AAQY AGDF+ KVL+    A+VR   +TDN+AGVK+PVF  ++TG+E  +NIGLAGGG+K+ +C++K+   +  L+KLASLQTSFVTMDEALKVTNRRVNALENVT+PR+E  +SYI  ELDELEREDFTRLKKV ++  KR+AA
Sbjct:    2 ADQVPPTRMALQTYKGKKAGASKGHQLLKKKADALKARFRDIAKEIYKTKGTMSESCSTAYFSLT-AAQYAAGDFKTKVLEGNFVASVRVTGQTDNIAGVKIPVFRQFDTGAEHLENIGLAGGGRKIAECKEKFTNLLAVLVKLASLQTSFVTMDEALKVTNRRVNALENVTLPRIEKTLSYITSELDELEREDFTRLKKVKDQNSKRQAA 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: W7TG62_9STRA (H-or na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG62_9STRA)

HSP 1 Score: 255 bits (651), Expect = 8.900e-82
Identity = 153/275 (55.64%), Postives = 186/275 (67.64%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAK-----DNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLD---------EFDTQEQGDVYF 783
            MS   VAPTRMAL MYK K +GAKKGYELLKKKSDALK RFR I K I   K  M +  ++AFFSLTQA QY AGDFR +VL     A+VR    TDNVAGVKLPVF  YE  SE K     DN+GLA GG+++  C++K+  ++ NL++LASLQTSF+T+DEALKVTNRRVNALENVTIPR+E +++YINRELDELEREDFTRLKKV   KR A A  +A              +EAL  +AA +G   + ++         ++DT    D+ F
Sbjct:    1 MSGAIVAPTRMALTMYKTKRVGAKKGYELLKKKSDALKVRFRDIMKDIARTKGNMADQGSSAFFSLTQA-QYAAGDFRQQVLQGSLTASVRVHTHTDNVAGVKLPVFRQYELQSEVKSKSDRDNLGLAQGGRQIKACKEKFTVFLTNLVRLASLQTSFITLDEALKVTNRRVNALENVTIPRIEAILAYINRELDELEREDFTRLKKVQGSKRTAQAAAEA-------------AEEALHKAAAAAGARSSKIEGGLVKDVTAQYDTAGDSDIVF 261
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: M4BRW9_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BRW9_HYAAE)

HSP 1 Score: 254 bits (649), Expect = 1.470e-81
Identity = 149/261 (57.09%), Postives = 181/261 (69.35%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDEFDTQEQGDVYF 783
            MS+ QVAPTRMAL  +K K + AKKG+ELLKKK+DALK RF+ + ++I + K  M  +A+ AFFSLTQA QY AGDFR KV+++   A +R + R DNVAGVKLPVF   E   E  DNIGLAGGG K+  CR K++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI+RELDELEREDF R+KKV   K+      QA K E+AA N L E        A V   D  +L +++     DV F
Sbjct:    1 MSSVQVAPTRMALTTFKTKSVSAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVTTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSDNIGLAGGGGKIQNCRAKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIENTISYISRELDELEREDFVRIKKVQANKQVIEKAVQAKKKEVAAKNALAEDP-----IADVVASDHDILSQYELSADADVVF 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: A0A7S1XVP0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVP0_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.860e-80
Identity = 141/205 (68.78%), Postives = 164/205 (80.00%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYET--GSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKV 609
            M  QQVAPTRMALQ+YKGK   A KGY+LLKKKSDALK RFR  AK+I   K  M ED+A AFFSLTQA QY AGDF+  VL+    A+VR   RTDNVAGVKLPVF SYET  G+ A +NIGLAGGG++V Q RDK+K ++  ++ LASLQTSF+T+DEALK+TNRRVNALENVTIPR+E  + YINRELDELERE+FTRLKK+
Sbjct:   57 MGDQQVAPTRMALQLYKGKREAATKGYKLLKKKSDALKVRFRDYAKKIAANKGSMAEDSAGAFFSLTQA-QYAAGDFKLAVLEGNCTASVRIHTRTDNVAGVKLPVFSSYETADGTNASENIGLAGGGRQVQQSRDKFKEFMGKMVTLASLQTSFLTLDEALKITNRRVNALENVTIPRIEATLKYINRELDELEREEFTRLKKL 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: A0A1V9Z1C8_9STRA (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z1C8_9STRA)

HSP 1 Score: 247 bits (631), Expect = 7.120e-79
Identity = 136/215 (63.26%), Postives = 165/215 (76.74%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKREAAAREQ 645
            MS  QV PTRM L +YK K + AKKGY+LLKKK+DALK RF+ + ++I + K  M +DAA AFFSLTQA QY AGDFR KV+++   A  R   R DNVAGVKLPVF   ET  E  +NIGL+GGG K+  CRDK+++ ++ L+KLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR++ VI YI+RELDELEREDF R+KKV   K EAA  +Q
Sbjct:    1 MSTVQVPPTRMNLTVYKAKRVAAKKGYDLLKKKADALKMRFQAMLREIQKTKMAMSQDAADAFFSLTQA-QYAAGDFRHKVVESVTTAEFRLENRIDNVAGVKLPVFTDVETTREKSENIGLSGGGGKIQNCRDKFRSLLKALVKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIDKVIDYISRELDELEREDFVRIKKVQANKIEAAKEQQ 214
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: D0N597_PHYIT (H-or Na-translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily n=15 Tax=Phytophthora TaxID=4783 RepID=D0N597_PHYIT)

HSP 1 Score: 247 bits (631), Expect = 9.220e-79
Identity = 133/203 (65.52%), Postives = 160/203 (78.82%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKV 609
            MS+ QVAPTRMAL  +KGK +GAKKG+ELLKKK+DALK RF+ + ++I + K  M  +A+ AFFSLTQA QY AGDFR KV+++   A +R + R DNVAGVKLPVF   E   E  +NIGLAGGG K+  CR+K++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI RELDELEREDF R+KKV
Sbjct:    1 MSSVQVAPTRMALTTFKGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKMSMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELEREDFVRIKKV 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Match: A0A0P1AP31_PLAHL (H-or na-translocating f-v-type and a-type atpase (F-atpase) superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP31_PLAHL)

HSP 1 Score: 246 bits (629), Expect = 3.410e-78
Identity = 136/209 (65.07%), Postives = 163/209 (77.99%), Query Frame = 1 
Query:    1 MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHELKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVAGVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQTSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRLKKVVEKKRE 627
            MSAQ VAPTRMAL  Y+GK +GAKKG+ELLKKK+DALK RF+ + ++I + K  M  +A+ AFFSLTQA QY AGDFR KV+++   A +R + R DNVAGVKLPVF   E   E  +NIGLAGGG K+  CR+K++  +  LIKLASLQTSFVT+DEALKVTNRRVNAL+NVTIPR+E  ISYI RELDELEREDF R+KKV   K+E
Sbjct:    1 MSAQ-VAPTRMALTTYRGKRVGAKKGFELLKKKADALKMRFQAMLREIQKTKLAMSTEASEAFFSLTQA-QYAAGDFRNKVIESVSTAEIRTQNRIDNVAGVKLPVFTEVEVSREKSENIGLAGGGGKIQNCREKFRVLLRALIKLASLQTSFVTLDEALKVTNRRVNALDNVTIPRIEKTISYITRELDELEREDFVRIKKVQANKQE 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6728.17629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL6_ECTSI3.400e-17399.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEZ0_9STRA1.950e-11185.44ATP synthase subunit D-domain-containing protein n... [more]
A0A7S2V1A2_9STRA1.930e-8355.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YKB3_AURAN4.780e-8265.88Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7TG62_9STRA8.900e-8255.64H-or na-translocating f-v-type and a-type atpase (... [more]
M4BRW9_HYAAE1.470e-8157.09Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A7S1XVP0_9STRA2.860e-8068.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9Z1C8_9STRA7.120e-7963.26H-or Na-translocating F-type, V-type and A-type AT... [more]
D0N597_PHYIT9.220e-7965.52H-or Na-translocating F-type, V-type and A-type AT... [more]
A0A0P1AP31_PLAHL3.410e-7865.07H-or na-translocating f-v-type and a-type atpase (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6728contigEcto-sp13_S_contig6728:152..3843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score490.3
Seed ortholog evalue5.4e-136
Seed eggNOG ortholog2880.D7FLL6
Preferred nameVMA8
Model size786
KEGG koko:K02149
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
Exons6
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1394@1,KOG1647@2759
Ec32 ortholog descriptionATPase, V1 complex, subunit D
Ec32 orthologEc-17_000670.1
Cds size786
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6728.17629.1prot_Ecto-sp13_S_contig6728.17629.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6728 152..3843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463925.1981032-CDS-Ecto-sp13_S_contig6728:151..3561681463925.1981032-CDS-Ecto-sp13_S_contig6728:151..356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6728 152..356 -
1681463925.2110457-CDS-Ecto-sp13_S_contig6728:1056..11541681463925.2110457-CDS-Ecto-sp13_S_contig6728:1056..1154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6728 1057..1154 -
1681463925.2224076-CDS-Ecto-sp13_S_contig6728:1723..18611681463925.2224076-CDS-Ecto-sp13_S_contig6728:1723..1861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6728 1724..1861 -
1681463925.2728999-CDS-Ecto-sp13_S_contig6728:2214..23191681463925.2728999-CDS-Ecto-sp13_S_contig6728:2214..2319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6728 2215..2319 -
1681463925.2823079-CDS-Ecto-sp13_S_contig6728:3170..32961681463925.2823079-CDS-Ecto-sp13_S_contig6728:3170..3296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6728 3171..3296 -
1681463925.293047-CDS-Ecto-sp13_S_contig6728:3729..38431681463925.293047-CDS-Ecto-sp13_S_contig6728:3729..3843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6728 3730..3843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6728.17629.1

>prot_Ecto-sp13_S_contig6728.17629.1 ID=prot_Ecto-sp13_S_contig6728.17629.1|Name=mRNA_Ecto-sp13_S_contig6728.17629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
MSAQQVAPTRMALQMYKGKLLGAKKGYELLKKKSDALKARFRKIAKQIHE
LKQVMREDAATAFFSLTQAAQYVAGDFRGKVLDTPRPAAVRCRARTDNVA
GVKLPVFDSYETGSEAKDNIGLAGGGQKVGQCRDKYKAWVENLIKLASLQ
TSFVTMDEALKVTNRRVNALENVTIPRMEGVISYINRELDELEREDFTRL
KKVVEKKREAAAREQALKNELAAANKLLETDEALAASAAVSGGDDTMLDE
FDTQEQGDVYF*
back to top

mRNA from alignment at Ecto-sp13_S_contig6728:152..3843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6728.17629.1 ID=mRNA_Ecto-sp13_S_contig6728.17629.1|Name=mRNA_Ecto-sp13_S_contig6728.17629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6728:152..3843- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGCCCAACAGGTGGCGCCGACGCGCATGGCGCTCCAGATGTATAA
GGGAAAGCTTCTGGGCGCGAAGAAGGGCTACGAGCTTCTTAAGAAGAAGT
CCGATGCGCTGAAGGTGAGATCAGACCGAGCGAGTCCATCTTCCCCTCTG
TTGCACTCCCTGCAGCGCACCGGCAGCGTCACGTAGGACGGGTGATAGAG
CTGAGGAGACATGTGCTGGCTTGGTGGGGTCGCATCTCCCGTTGAGACGA
CCAATGTGTTGGCTGTGACCCCTGCGCAGAATGAGATTGGTTCCGCGCAA
AGGTGAGTTCTCCTAAAGGAAGAAGTACACAGGTATTCAGTTCGATCTCG
GTTTTGATGCGGAGAGCTCTTTTTAGAACGCAGAGAGCGTTGTACATGGT
ACTTGATGACCCCACGCTCTGCTTTGTTTGTCTCACCCGATCAGACGAAA
AACTGAAGCCGCGTGCATGAATGTCGTCGTTGCTGTCTGTCTCTGTTTTA
TTTAAACTTCTCCGTTTTTCTTATGTTGCTCCCCCCAAATCGGCCAGGCC
CGATTCCGCAAAATTGCCAAACAAATCCACGAGCTGAAGCAGGTGATGCG
TGAAGACGCCGCCACCGCGTTCTTTTCGCTCACCCAAGCGGCGCAGTATG
TCGCAGGAGACTTCCGTGGGAAGGTACGGGGTTAATCGCCACGCGCTTGT
GATACCTACCCCGATGCGACGGCGTATGTAGCTTGAAAGGTTCCATTGCT
TTATGCAGCTGACTTGGTGAACGATGTAGTCCTGCAACAGCGGCTGCCGA
TGATACTTGCAACAGCGGCCGACTTGCGGAAGTGGTACAGCAGTACTGCC
GTAGGCCAGTCGGTGTTTATCGCGTAGAAGGCAAAAGAGGGGACGGTAAG
AGCTTTCAGCGACTTGTACTTGCTCAATTCAAGTGTACGACGAAAGGGGG
CCCGGGGATTGGTGTTGCTCCTTGAGTACAGCCAAAGCTGTCTCGGGATC
CAACAGTTTACACATTTATTTTCGGACACTTGCGTCTCGAAGTTTGTCGA
AACTAGGTATACCTACAGAGGAGGCTTGACACGAAAGTATCTCTGTACGT
GCCTTCTGCTGCAAGCGGATGCCTCCTGGGGGTGTAATATTCCAATGGCC
GCGGGATGTTCGTGTCAGTGATTGCCACGACATACAACACCTCGCCTGAC
TTTCCGAGGCAACTCAAGTTGGCGTCATGTCCATGGACGTTGTAATATCG
AGGTCAGCTCTGCTGGTAGTAGATGACAAGCAGCCGTTCATCTTGTACCG
CTGGTGTGGAAGACGGTCCTCTCCTACATCGGGGAAAGCAGCATGTACAC
CCACAGCACCACCCTGCACGCTTCTACCGCATGAATTCTTCCCCCCTCTG
CAACATGTGGGATATCAATCGTCGCTGTTGCATATACGTGTGCGTCTTGT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCCGTGGCGGTGGCTCT
CCTCGGGGATGGCTCAACGGATAGGTGCTGGACACTCCACGGCCAGCGGC
CGTGCGGTGCAGGGCTAGGACAGACAACGTAGCGGGCGTCAAGCTTCCGG
TGTTCGACTCGTACGAGACCGGGTCGGAGGTTCGTGTGGTCTCGATTTGT
TGCTGCACGCATTGGTGTTGTAGCCTCCTTGCTTGTTTGATACAGTAGTA
CCTTGTACTTGCAGAATCTGAGGCTCCCTCGTCGAGATTTCAGGTGCACT
CAAGACCGCGCTATCGTTGAGTGCCATCGAAGCGGCTAAGGTTCTAGCAA
TTGCTTCTTACTCGTTGAACCAGTTAGACGCAGATGATGTATCCTCATCG
GCTCTGCGGTCTTTCCTCACGCCCCACGCCCCCCGTGCGCGCCGGCAATC
TTTTGCATTCTCTTTTTTTGTTTTTTTGTTTCCTTTTTGTTGCGGACACG
GCTTCGGAACGCATCCATGAACACCGCACCAGGCCAAGGACAACATCGGT
CTAGCCGGGGGTGGGCAGAAGGTGGGACAGTGCCGCGACAAGTACAAGGC
CTGGGTGGAGAACCTTATCAAGCTGGCGTCCCTGCAGACGTCGTTTGTCA
CCATGGACGAGGCGCTCAAGGTGCGGTTCACCTACATCTGTACGATTTTT
ATGGGTTCTGGCTGATGATCTGGTTTGCCGTGTTCGCTGTGTTGACCGCG
GTGTTTCGTCGGTATGTGCGGTAGTGGTGCTTAGCTTTTTCACGTCCTGG
TGACTCCCTTTGCAACCTTCGGTTATCCGTCACTCGGCTAAGCTGTGTTC
TGGGGCCAGCGCTTCCCTTGTTTTTGATAGGTTAAATAGAAAAACACGAA
CAGGCTTGCAGTACCGACATGGCAGGTCTTGCGCTGAAGTAGAAGGCAGC
ATATGCTCGGTTTGTTTTACTTGGCTACGGAGATTGTTGTGCGTGTTTCT
GAGAGAAGGGATGGTGTGCTGGTCTGTTCCACCTGTCGGAGGACGGGACC
CCCTTGGCCTGTGTCGTGCTATGCTCGGTTGTGCGCTCTACAGAGATCCA
AGGTCTGCTTGCTCTAGATCGCAACGTAAGACTAGTAGTTGATCTAGTAG
TTGTATTGGGCGCTGTCTGTCGTGTCCCTCGCCGGTGTTTTTCTTTCTCT
TTGGTCATTGATCCCTCCTTCTCCCCCAAATGGTGGCAGGTAACGAACCG
CCGCGTTAACGCGCTGGAAAACGTGACGATCCCGCGAATGGAGGGAGTGA
TCAGCTACATCAACAGGGAGCTGGACGAGCTAGAGAGGTAACGCCAGCAA
CATTTGTGCGTTGATTGCTTGATGCTACGTGTGGGAACAGCAGTACAGAA
ACGTATGCGTGGGTGGTTGTTGTTGCTAAAGGTTTCGTCGTCTCCTTTGC
ACCGCTCGACAACAACGGTCGGTGGTGTCTTTTGCTCGCACGACAACCCA
ATAGCGTCGCGATAACCCTCGACTAGGAGAGTGTGTGATAGTGTCGATGC
GAGGGCTTCTCGACCCTGTAGTCCACTTGGGTAGCGCAGAGAGCAAGACG
GTACAGCATTGGGCCGTGAATCGTGCATTTCCCCGCTCGTGGCGTGGCGA
GGGTAGGGTAGGCATGCCTCTGCCCGTGATGACGCGGTCCTTGGTACGGA
AAATCGGAAAATCGAGCGAAGACTGCTTCCGTCTATCGTTTCTCTACCTT
ACATATCCACCATCTTCTGCCGAATCGTGTACTCTCGTCGCATGAGTCAA
CCAGGTTGGATTGGACGGAATTCTTCCTGTCTGTATTACAACCAACACAT
GGCGACGTTCGGCGTCGGTGATGGTCGCCTTTGACGTTGAAACTGATTGT
TCCTTGTATGGAAAGAGTCAACTTTACTTCGGACCTGTTTGACGTCGCCC
ACCACCACCATTTTCTCCGCCCGGTAACATCATACCTTTCCTTGACGGAC
TTTCGCGCGTTTGCATCTTCGGCGACAACAATCCCAGGGAGGACTTCACT
CGGCTGAAGAAGGTGGTGGAGAAGAAGCGCGAGGCGGCAGCTAGGGAGCA
GGCACTCAAGAACGAGTTGGCGGCCGCGAACAAGCTTCTCGAGACGGACG
AAGCTCTCGCCGCTTCTGCCGCCGTCAGCGGGGGAGACGACACGATGTTA
GACGAGTTCGACACGCAAGAGCAGGGGGACGTCTACTTCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6728:152..3843-

>mRNA_Ecto-sp13_S_contig6728.17629.1 ID=mRNA_Ecto-sp13_S_contig6728.17629.1|Name=mRNA_Ecto-sp13_S_contig6728.17629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6728:152..3843- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGCCCAACAGGTGGCGCCGACGCGCATGGCGCTCCAGATGTATAA
GGGAAAGCTTCTGGGCGCGAAGAAGGGCTACGAGCTTCTTAAGAAGAAGT
CCGATGCGCTGAAGGCCCGATTCCGCAAAATTGCCAAACAAATCCACGAG
CTGAAGCAGGTGATGCGTGAAGACGCCGCCACCGCGTTCTTTTCGCTCAC
CCAAGCGGCGCAGTATGTCGCAGGAGACTTCCGTGGGAAGGTGCTGGACA
CTCCACGGCCAGCGGCCGTGCGGTGCAGGGCTAGGACAGACAACGTAGCG
GGCGTCAAGCTTCCGGTGTTCGACTCGTACGAGACCGGGTCGGAGGCCAA
GGACAACATCGGTCTAGCCGGGGGTGGGCAGAAGGTGGGACAGTGCCGCG
ACAAGTACAAGGCCTGGGTGGAGAACCTTATCAAGCTGGCGTCCCTGCAG
ACGTCGTTTGTCACCATGGACGAGGCGCTCAAGGTAACGAACCGCCGCGT
TAACGCGCTGGAAAACGTGACGATCCCGCGAATGGAGGGAGTGATCAGCT
ACATCAACAGGGAGCTGGACGAGCTAGAGAGGGAGGACTTCACTCGGCTG
AAGAAGGTGGTGGAGAAGAAGCGCGAGGCGGCAGCTAGGGAGCAGGCACT
CAAGAACGAGTTGGCGGCCGCGAACAAGCTTCTCGAGACGGACGAAGCTC
TCGCCGCTTCTGCCGCCGTCAGCGGGGGAGACGACACGATGTTAGACGAG
TTCGACACGCAAGAGCAGGGGGACGTCTACTTCTGA
back to top