mRNA_Ecto-sp13_S_contig672.17617.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig672.17617.1
Unique NamemRNA_Ecto-sp13_S_contig672.17617.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: D8LK97_ECTSI (Divergent RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK97_ECTSI)

HSP 1 Score: 857 bits (2213), Expect = 6.470e-310
Identity = 503/555 (90.63%), Postives = 518/555 (93.33%), Query Frame = 1
Query:    1 MGRSCCRRVLDALCPCFRRNRLGSSASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKVQHVVILPSXXXXXXXXXXXXXXXXXXDS------AAERPLQRLPSSARRGGRGGLGQGTTTRAWALRAAAPPHRRDLSRAKSFSPRGFVTPAGAAAAASQGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFQKVGASTLATTTAAEDKESVLACGRRSSGTSPERTVSAXXXXXXXXXXXXXXXXXXXXXTA-EESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRDSYP 1644
            MGRSCCRRVLDALCPCFR+NRLGSS SVSGA+GEHDMSLNFILHGECGVGKTSLRNRWVDG+FTGDVAPTFGVDFNIKTLDLVQE+ ED G+Q REEEPAVA KT PSG RGKGGSTT +A CADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELR+YF+DPEHR+KLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAK GTNVREAFMFATTRAVGE+LAR RLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQK Q V++LP XXXXXXXXXXXXXXXXXX        AAERPLQRLPSSARRGGRGGLGQGTT RAWALRAAAPPHRR LSRAKS SPRG  T A AAAAASQGLQQRRPESPVA SGTGDAATSSLLERPELSPV+VER SEGAAF+K+GASTLATTTAAEDKESVLACGRRSSGTSPERTVS XXXXXXXXXXXXXXXXXXXXX   EESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFR SYP
Sbjct:    1 MGRSCCRRVLDALCPCFRQNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGGDQTREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAERPLQRLPSSARRGGRGGLGQGTTARAWALRAAAPPHRRHLSRAKSPSPRGLAT-ASAAAAASQGLQQRRPESPVALSGTGDAATSSLLERPELSPVEVERRSEGAAFRKIGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTXXXXXXXXXXXXXXXXXXXXXXXXEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRGSYP 553          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A6H5KHP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP3_9PHAE)

HSP 1 Score: 784 bits (2025), Expect = 1.800e-281
Identity = 453/529 (85.63%), Postives = 467/529 (88.28%), Query Frame = 1
Query:    1 MGRSCCRRVLDALCPCFRRNRLGSSASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKVQHVVILPSXXXXXXXXXXXXXXXXXXDSAA------ERPLQRLPSSARRGGRGGLGQGTTTRAWALRAAAPPHRRDLSRAKSFSPRGFVTPAGAAAAASQGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFQKVGASTLATTTAAEDKESVLACGRRSSGTSPERTVS-AXXXXXXXXXXXXXXXXXXXXXTAEESATKQLREASSFWL 1566
            MGRSCCRR LDALCPCFRR+RLGSS SVSGA+GEHDMSLNFILHGECGVGKTSLRNRWVDG+FTGDVAPTFGVDFNIKTLDLVQE+ EDEG+QAREEE AVA KT PSG RGKGGST  +A  ADL+VKINVYDTSGKPGYR+VNSTYLLAFDAVLFVYDISSVSTLNELRQYFN+PEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQ VGSQTGQDTAAEFGMPFVEVSAK GTNVREAFMFATTRAVGE+LAR RLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVF GLTGRRRYPQK Q V ILP+        XXXXXXXXXX          ERPLQR  SSARRGGRGGLGQGTT +AWALRAAAPPHR  LSRAKS SPRG  T   AAAAA QGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAF+K GASTLATTTAAEDKESVLACGRRSSGTSPERTVS +           XXXXXXXXXX AEESATKQLREASSFWL
Sbjct:    1 MGRSCCRRALDALCPCFRRHRLGSSTSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEETAVAGKTLPSGGRGKGGSTAKQAPHADLKVKINVYDTSGKPGYRDVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNNPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQ-VGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFTGLTGRRRYPQKAQPVGILPAAPPTAGNAXXXXXXXXXXXXXXXXXXXXERPLQRPSSSARRGGRGGLGQGTTAQAWALRAAAPPHRCHLSRAKSSSPRGLTT---AAAAAFQGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFRKGGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTSGGSHGDVSQGAXXXXXXXXXXXAEESATKQLREASSFWL 525          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A7S3F9C0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F9C0_9VIRI)

HSP 1 Score: 104 bits (260), Expect = 3.520e-22
Identity = 65/209 (31.10%), Postives = 102/209 (48.80%), Query Frame = 1
Query:  100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
            E+D     +L G+ GVGK+ L  R+ D  +T     T GVDF I+T+DL                                G T          +K+ ++DT+G+  +R + S+Y      ++ VYD++ + + N ++Q+ N+ +     +  K      LLVGNK D  L+ ++QV +QT +  A E G+PF+E SAKN TNV +AFM
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDL-------------------------------DGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDMDSFNNVKQWLNEIDRYASESVNK------LLVGNKSD--LTAKKQVDTQTAKAFADEIGIPFLETSAKNSTNVEQAFM 163          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A0A9X7Z9_LYGHE (Ras-related protein ORAB-1 n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X7Z9_LYGHE)

HSP 1 Score: 104 bits (260), Expect = 3.690e-22
Identity = 63/213 (29.58%), Postives = 103/213 (48.36%), Query Frame = 1
Query:  100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATT 738
            E+D     +L G+ GVGK+ L +R+ DGV+      T GVDF I+T++L                             GK              +K+ ++DT+G+  +R + S+Y    + ++ VYD++  S+   +R + ++ EH           ++ LLVGNKCD+P   R+QV ++  +  A +  +PF+E SAK  TNV EAF+   T
Sbjct:    3 EYDYLFKILLIGDSGVGKSCLLHRFADGVYNDTYISTIGVDFKIRTIEL----------------------------DGK-------------VIKLQIWDTAGQERFRTITSSYYRGANGIIIVYDVTEPSSFTHVRAWLSEIEHYAS------ENVSKLLVGNKCDLP--SRRQVDAEEAKQFAEKLQIPFLEASAKQNTNVEEAFLTMAT 166          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A9NZ10_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NZ10_PICSI)

HSP 1 Score: 101 bits (251), Expect = 6.000e-21
Identity = 65/209 (31.10%), Postives = 98/209 (46.89%), Query Frame = 1
Query:  100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
            E+D     +L G+ GVGK+ L  R+ D  +      T GVDF I+T++                            + GK              +K+ ++DT+G+  +R + S+Y      ++ VYD++   + N ++Q+ N+          K      LLVGNKCD  L+ R+ V  QTG+D A   G+PF+E SAKN TNV EAFM
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE----------------------------QDGK-------------MIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEINRYASENVNK------LLVGNKCD--LTTRRVVSYQTGKDFADSLGIPFLETSAKNATNVEEAFM 163          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A8B9IYK6_9PSIT (RAB1A, member RAS oncogene family n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9IYK6_9PSIT)

HSP 1 Score: 102 bits (253), Expect = 1.260e-20
Identity = 65/225 (28.89%), Postives = 104/225 (46.22%), Query Frame = 1
Query:   52 RRNRLGSSASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
            RR   G S  ++ + G HD     +L G+ GVGK+ L  R+ D  +T     T GVDF I+T++L                                G T          +K+ ++DT+G+  +R + S+Y      ++ VYD++   + N ++Q+  + +        K      LLVGNKCD  L+ ++ V   T ++ A   G+PF+E SAKN TNV ++FM
Sbjct:   50 RRAGAGDSGILAPSPGPHDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-------------------------------DGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK------LLVGNKCD--LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 225          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: A0A0V0JBS9_SCHSO (GTP-binding protein YPTM2 n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A0V0JBS9_SCHSO)

HSP 1 Score: 100 bits (249), Expect = 1.390e-20
Identity = 69/246 (28.05%), Postives = 114/246 (46.34%), Query Frame = 1
Query:   85 SGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSA----GRGRGATV 810
            S A  EHD     +L G+ GVGK+ L  R+ D V+T +   T GVDF I+T++L                                             VK+ ++DT+G+  +R + + Y      ++ VYD++   +   + ++ N+ +   +      + +  LLVGNK D+  ++R  V ++TGQ  A+E GMPF+E SAK+ +NV EAF+   ++ +  +  +   KQS     G G G  V
Sbjct:    3 SEAVVEHDYIFKLLLIGDSGVGKSCLLLRFADDVYTDNFISTIGVDFKIRTVEL-----------------------------------------DGYHVKLQIWDTAGQERFRTITAAYYRGAHGIIIVYDVTDEESFKNVEEWLNEIKRYGR------SDVFKLLVGNKSDLTANRR--VATETGQAFASEAGMPFLETSAKDSSNVEEAFLSMASQILQHFKTK---KQSGLTNTGEGGGTVV 196          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: UPI0003315D20 (ras-related protein ORAB-1-like n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003315D20)

HSP 1 Score: 99.0 bits (245), Expect = 2.140e-20
Identity = 63/209 (30.14%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFM 726
            E+D     +L G+ GVGK+ L  R+ D  +T     T GVDF I+T+DL                                G T          +K+ ++DT+G+  +R + S+Y      ++ VYDI+   + N ++ +  + E     + KK      LLVGNKCD  L+ ++ V   T ++ A + G+PF+E SAKN TNV +AF+
Sbjct:    6 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTIDL-------------------------------DGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQESFNNVKLWLQEIERYACESVKK------LLVGNKCD--LTAKRAVEYSTAKEYADQLGIPFLETSAKNSTNVEQAFL 165          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: M5X0Z8_PRUPE (Uncharacterized protein n=6 Tax=Prunus TaxID=3754 RepID=M5X0Z8_PRUPE)

HSP 1 Score: 99.8 bits (247), Expect = 2.770e-20
Identity = 68/230 (29.57%), Postives = 108/230 (46.96%), Query Frame = 1
Query:   73 SASVSGAAGEHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLA 762
            +A  + A  +HD  +  +L G+ GVGK+ L  R+ DG FT     T G+DF I+T++L                          G+R                +K+ ++DT+G+  +R + + Y      +L VYD++  S+ N +R +  + E    ++  K      +LVGNK DM  S+R  V +  GQ  A E+G+ F+E SAK   NV E F F+  R + + LA
Sbjct:    2 AAPPARARADHDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-------------------------DGKR----------------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASVSVNK------ILVGNKADMDESKRA-VPASKGQALADEYGIKFLETSAKTNMNVEEVF-FSIGRDIKQRLA 182          
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Match: RAD2C_ARATH (Ras-related protein RABD2c n=65 Tax=Brassicales TaxID=3699 RepID=RAD2C_ARATH)

HSP 1 Score: 99.4 bits (246), Expect = 2.780e-20
Identity = 70/237 (29.54%), Postives = 111/237 (46.84%), Query Frame = 1
Query:  100 EHDMSLNFILHGECGVGKTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPAVADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVGEYLARNRLKQSAGRGRGATV 810
            E+D     +L G+ GVGK+ L  R+ D  +      T GVDF I+T++                               + G T          +K+ ++DT+G+  +R + S+Y      ++  YD++ + + N ++Q+ N+ +        K      LLVGNKCD  L+ ++ V ++T +  A E G+PF+E SAKN TNV EAFM A T A+   +A     Q AG  +  TV
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVE-------------------------------QDGKT----------IKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNK------LLVGNKCD--LTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFM-AMTAAIKTRMA----SQPAGGSKPPTV 186          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig672.17617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK97_ECTSI6.470e-31090.63Divergent RAB-like GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KHP3_9PHAE1.800e-28185.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3F9C0_9VIRI3.520e-2231.10Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A0A9X7Z9_LYGHE3.690e-2229.58Ras-related protein ORAB-1 n=1 Tax=Lygus hesperus ... [more]
A9NZ10_PICSI6.000e-2131.10Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A8B9IYK6_9PSIT1.260e-2028.89RAB1A, member RAS oncogene family n=1 Tax=Amazona ... [more]
A0A0V0JBS9_SCHSO1.390e-2028.05GTP-binding protein YPTM2 n=2 Tax=Diphyllobothriid... [more]
UPI0003315D202.140e-2030.14ras-related protein ORAB-1-like n=1 Tax=Sorex aran... [more]
M5X0Z8_PRUPE2.770e-2029.57Uncharacterized protein n=6 Tax=Prunus TaxID=3754 ... [more]
RAD2C_ARATH2.780e-2029.54Ras-related protein RABD2c n=65 Tax=Brassicales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig672contigEcto-sp13_S_contig672:775..4737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score864.4
Seed ortholog evalue2.9e-248
Seed eggNOG ortholog2880.D8LK97
Model size1647
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categorymitochondrion
Exons6
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
Ec32 ortholog descriptiondivergent RAB-like GTPase
Ec32 orthologEc-16_002590.1
Cds size1647
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig672.17617.1prot_Ecto-sp13_S_contig672.17617.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig672 775..4737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.9152107-CDS-Ecto-sp13_S_contig672:774..8551681463923.9152107-CDS-Ecto-sp13_S_contig672:774..855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig672 775..855 -
1681463923.926742-CDS-Ecto-sp13_S_contig672:1418..16711681463923.926742-CDS-Ecto-sp13_S_contig672:1418..1671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig672 1419..1671 -
1681463923.9366148-CDS-Ecto-sp13_S_contig672:2156..26261681463923.9366148-CDS-Ecto-sp13_S_contig672:2156..2626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig672 2157..2626 -
1681463923.9461164-CDS-Ecto-sp13_S_contig672:3229..34481681463923.9461164-CDS-Ecto-sp13_S_contig672:3229..3448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig672 3230..3448 -
1681463923.9638739-CDS-Ecto-sp13_S_contig672:3810..39301681463923.9638739-CDS-Ecto-sp13_S_contig672:3810..3930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig672 3811..3930 -
1681463923.973856-CDS-Ecto-sp13_S_contig672:4233..47371681463923.973856-CDS-Ecto-sp13_S_contig672:4233..4737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig672 4234..4737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig672.17617.1

>prot_Ecto-sp13_S_contig672.17617.1 ID=prot_Ecto-sp13_S_contig672.17617.1|Name=mRNA_Ecto-sp13_S_contig672.17617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=549bp
MGRSCCRRVLDALCPCFRRNRLGSSASVSGAAGEHDMSLNFILHGECGVG
KTSLRNRWVDGVFTGDVAPTFGVDFNIKTLDLVQEDREDEGEQAREEEPA
VADKTSPSGERGKGGSTTSKARCADLQVKINVYDTSGKPGYREVNSTYLL
AFDAVLFVYDISSVSTLNELRQYFNDPEHREKLAAKKKAGMAMLLVGNKC
DMPLSQRQQVGSQTGQDTAAEFGMPFVEVSAKNGTNVREAFMFATTRAVG
EYLARNRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGR
RRYPQKVQHVVILPSSPPTAAITSASGGGGCGGDSAAERPLQRLPSSARR
GGRGGLGQGTTTRAWALRAAAPPHRRDLSRAKSFSPRGFVTPAGAAAAAS
QGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFQKVGA
STLATTTAAEDKESVLACGRRSSGTSPERTVSAGGGGRGDVSQGAAAAAA
AAVATAEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRDSYP*
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mRNA from alignment at Ecto-sp13_S_contig672:775..4737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig672.17617.1 ID=mRNA_Ecto-sp13_S_contig672.17617.1|Name=mRNA_Ecto-sp13_S_contig672.17617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig672:775..4737- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCGGAGCTGCTGCCGACGCGTGCTCGACGCTCTGTGCCCTTGCTT CCGCCGAAACCGCTTGGGATCGTCGGCGTCGGTAAGTGGCGCCGCGGGCG AGCACGACATGAGCTTGAACTTCATACTGCACGGGGAGTGCGGCGTAGGG AAGACGAGCCTCAGGAACCGGTGGGTCGACGGCGTCTTCACGGGAGACGT TGCACCCACGTTCGGCGTAGACTTCAACATAAAAACTCTCGACCTGGTGC AAGAAGACCGCGAAGACGAGGGCGAACAGGCGCGAGAGGAAGAGCCTGCC GTCGCAGACAAGACCTCACCTAGCGGAGAACGAGGAAAAGGTGGGTCCAC GACCTCGAAGGCGCGGTGCGCGGATCTGCAGGTGAAGATCAACGTGTACG ACACGAGTGGCAAGCCTGGCTATCGAGAAGTTAACAGCACGTACCTGCTG GCCTTCGACGCGGTGCTCTTCGTTTACGACATTTCCTCGGTGTCTACGCT CAACGTAAGAGTGATCGACGGCGCGAAAATGAAAAGACTGACTTAGCCGC GTGTCTTACAACGTGTCGCCAAGATAGATGTTATATTTTCTGCGCATGCG CGCGAGTGGCTGCATTCGAAGCACGCCACAGCCTATCGCTGCTTACTCAC GACGCGTGCACGCAAGAAGACATGACACACCATTGTCGGCGGTGGGTGTA AACCACGAACAATCGCACAACACGTAAACCACTCCTGTACACCCAATGCC TACACGTACAGTCGTCATGGACCCGCGGCTTGCCTTCTCGTCTTTGTCAC CGGGCAGGAACTACGCCAATATTTCAACGACCCGGAGCACCGTGAAAAGC TTGCGGCGAAGAAGAAAGCAGGCATGGCAATGCTTTTGGTGGGGAACAAG TGCGATATGCCGCTATCACAACGACAGGTGAGAGGGTAAGGGGGGAATGG AGATTATGTACAGGCTCTTCTAGGATGAATGCCTTCTGTTGTGCCCCATA CAAGTCAGCCTTTCATGGTGGAGTAGGTCGTCGAACAGTAGTGAACCCTG AGCCAATAATATCCATCCCCCACGCGGCATTTCGCACGTACGTAGACGAA ACCTCCGTGAGACCCCCCTCCCCCCCCCCCATCCAAATATGTCCATGCAT CGTGCTGTCTTTATCCAAACATCATGCTGTCGCTGCTTTATGTTCGCATC ACGATCCCCGCCACCCTCGCATGCACAACTATCCCCCAATCCACACGTGC TCATGCTCCTTCTCGTTTGGCTCGTGGATGTGGGGGTAGCAGGTCGGGTC TCAGACGGGGCAAGACACCGCGGCAGAGTTCGGCATGCCCTTCGTAGAGG TGAGCGCCAAAAACGGGACAAACGTGAGAGAGGCCTTCATGTTCGCCACG ACTCGAGCCGTCGGGGAGTACCTCGCCCGCAACCGGCTAAAGCAGTCGGC GGGTAGGGGGAGGGGGGCGACGGTGAAGAAGACGATGCAGAAGGTTCCGG GTCTTCAGGTATACAGAGAACCAAGACACACAATGTTGCAGAGGTTGCTG ATGTTCTGGCCGTTTTCCTAACGATTTGTCTATTCATACGTATGGCTGCC CAGCGCGCATGCTCGGTACGGCGTTGTCCAGTGTATGCCCCGACATCATG CAATAGTGTGGGACGTATCCTCGCCAAGCCTTGCCAGACCGCTTGATGCC AATGGCAAAGAGATGCACGCCCTGTCCTCGAAAAAAAAACGTGGAGATAA CTTGGTATGAATGCGAGGGGACGAAAGTGATCGTTAAGGTGGTAACGATT TAAGTCTCGCGGAGGCAACGAGGGGGCAGGGAAGCGAGGCAAGCCCAGCT CTCGAAAATCCAGGTGCACATAGTTTGGCGGCGTTTTTCGTGAACGCACG GGGCTGGTGATCTCATACGTTTTGTTACCTGTTTCTTCGGAGCCTCCGAG GCGATGAGCCGCAGACAGCAGCAACCGCAAAGCAACAAATAGTTTCGTGG CGCCTCGCAGTGGAACCCCACGAACAGCAAAACGTGACCAACCTCACGCC TGACACAACTAGCCCCGCCCCTCGCGCGTCCGCAACTTGCGTTCGGTGTT GAGAAAAACAGCGCGCCCTGCGCACGAGGGCTAGCGTGCTGGACGTGTTC AAAGGTCTGACGGGGCGTCGCCGTTACCCTCAGAAAGTCCAACACGTCGT CATCCTCCCGTCATCCCCACCCACCGCCGCTATTACCTCCGCCAGTGGTG GCGGCGGCTGCGGCGGCGACTCGGCGGCAGAACGGCCGCTACAGCGCCTC CCGTCCTCCGCCCGTCGCGGCGGGAGAGGAGGCCTGGGTCAAGGGACGAC CACCCGAGCGTGGGCGCTACGCGCGGCAGCGCCACCCCACCGCCGCGACC TGTCGAGAGCCAAGTCTTTTTCGCCCCGTGGCTTTGTAACGCCGGCGGGA GCGGCGGCGGCGGCCTCCCAGGGGCTGCAGCAGCGGCGGCCGGAGTCGCC GGTAGCTCGGAGCGGGACTGGGGACGCGGCGACGTCGAGTTTGCTCGAGA GGCCGGAGTTGTCGCCGGTGGATGTGGAGAGGTATGTGTGTGTGTGACGC AGCGGGCGATGCGCGTGTGGAGTATCTTTGCGTCCCTTCTGGCTGGCGTT GTGTTGTTTCGGTTGCATGTGTTGCGATGAGGAAACTGATTTTGGGTTTC AGAGCAACGAAGTCCCCCCCTCTTTCTGTTCGACGGAACCCCACCGTCTG GGGCACTCGTGTACATCACAAAGCTGGTGTTTACCTGCCGACTCTACTGT CGCGTTTTTTAGCTTTCGATCAGGATCACGCGGTTAGTGCGGTCGATGTC AAACGAAGTTACACGCACACACACCCGTGCCGCCCCCTCACGGGATCCCA GTTAACGGCATTCAGGAGTGTTATTTGTTTTCACCCGCACTGAGACTGAC GTCTTTTCATTGGTCAGCAGGTTTGCGCGGTCGACGCTAATGATAGAAAC ACACACACCTACGCGCATCAACGCTTCCAACATGTACCCACGCCCGTTCC CCCTTTTTCGGGGCAGAGGTTCCGAGGGGGCCGCGTTCCAGAAGGTAGGA GCGTCCACGCTAGCTACGACGACAGCGGCGGAGGACAAGGAGTCCGTCTT GGCGTGCGGTCGTCGCTCCAGCGGGACGTCCCCGGAACGAACCGTCAGTG CCGGCGGCGGCGGCCGCGGCGATGTGTCGCAGGGTGCGGCGGCGGCGGCA GCGGCGGCGGTAGCGACGGCCGAAGAAAGCGCGACGAAGCAGCTGCGTGA GGCCAGCAGTTTCTGGTTGGTGCGTGCATTCTGTGTACATACCGCCATGG GTCGGGGTGACCGCGTTGCCCGTGCTGCTGGGGAACGATGATTCAACATA CGTAGGGTGAATGATGCGCTACTTGTGGTGATGTATAGTAGATGGACTGC TTAGTAGCATTTGTGGACGTACGTACGCAGATCCCCCCCACACTGTTGAT GTGGTGGCTGATCGATTCATGGTTCTCTCGGCGGTACCTTTACCACCGCG TGGACTAGACTTATGAGCACGAGCTGCTCTACACGTGGTGCATGTTCCTC TGGACCCATTCACACCTCTGGGCTGGAGCTGTGTGCCACATCGACGCGCT CTTAACGATGGATGCCGGTGGTCTAGATGAACGCAACCCTGGAACGCTCC CAGACATGTAGAAACCCAGATTCCGATGTCGGGATTCGATGCACGTGGTG CTATTTGCACTTTTTGTGCGTCACGACCCCCCTGCTCGCCCCGAAACTGC TGAAATTGTCCACATCCACCCCTTCGACCCTGCCGCTACTCCCCGCCCCT CTCTGTATATGATTTACCGCACCCCCGAGCAGGACAAGTGGGGTATAAAG GCGGCAAAGACCGACGCCACACGGGAAAGGCACTCAAAAGAATTCCGAGA CAGCTATCCTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig672:775..4737-

>mRNA_Ecto-sp13_S_contig672.17617.1 ID=mRNA_Ecto-sp13_S_contig672.17617.1|Name=mRNA_Ecto-sp13_S_contig672.17617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig672:775..4737- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCGGAGCTGCTGCCGACGCGTGCTCGACGCTCTGTGCCCTTGCTT
CCGCCGAAACCGCTTGGGATCGTCGGCGTCGGTAAGTGGCGCCGCGGGCG
AGCACGACATGAGCTTGAACTTCATACTGCACGGGGAGTGCGGCGTAGGG
AAGACGAGCCTCAGGAACCGGTGGGTCGACGGCGTCTTCACGGGAGACGT
TGCACCCACGTTCGGCGTAGACTTCAACATAAAAACTCTCGACCTGGTGC
AAGAAGACCGCGAAGACGAGGGCGAACAGGCGCGAGAGGAAGAGCCTGCC
GTCGCAGACAAGACCTCACCTAGCGGAGAACGAGGAAAAGGTGGGTCCAC
GACCTCGAAGGCGCGGTGCGCGGATCTGCAGGTGAAGATCAACGTGTACG
ACACGAGTGGCAAGCCTGGCTATCGAGAAGTTAACAGCACGTACCTGCTG
GCCTTCGACGCGGTGCTCTTCGTTTACGACATTTCCTCGGTGTCTACGCT
CAACGAACTACGCCAATATTTCAACGACCCGGAGCACCGTGAAAAGCTTG
CGGCGAAGAAGAAAGCAGGCATGGCAATGCTTTTGGTGGGGAACAAGTGC
GATATGCCGCTATCACAACGACAGCAGGTCGGGTCTCAGACGGGGCAAGA
CACCGCGGCAGAGTTCGGCATGCCCTTCGTAGAGGTGAGCGCCAAAAACG
GGACAAACGTGAGAGAGGCCTTCATGTTCGCCACGACTCGAGCCGTCGGG
GAGTACCTCGCCCGCAACCGGCTAAAGCAGTCGGCGGGTAGGGGGAGGGG
GGCGACGGTGAAGAAGACGATGCAGAAGGTTCCGGGTCTTCAGCGCGCCC
TGCGCACGAGGGCTAGCGTGCTGGACGTGTTCAAAGGTCTGACGGGGCGT
CGCCGTTACCCTCAGAAAGTCCAACACGTCGTCATCCTCCCGTCATCCCC
ACCCACCGCCGCTATTACCTCCGCCAGTGGTGGCGGCGGCTGCGGCGGCG
ACTCGGCGGCAGAACGGCCGCTACAGCGCCTCCCGTCCTCCGCCCGTCGC
GGCGGGAGAGGAGGCCTGGGTCAAGGGACGACCACCCGAGCGTGGGCGCT
ACGCGCGGCAGCGCCACCCCACCGCCGCGACCTGTCGAGAGCCAAGTCTT
TTTCGCCCCGTGGCTTTGTAACGCCGGCGGGAGCGGCGGCGGCGGCCTCC
CAGGGGCTGCAGCAGCGGCGGCCGGAGTCGCCGGTAGCTCGGAGCGGGAC
TGGGGACGCGGCGACGTCGAGTTTGCTCGAGAGGCCGGAGTTGTCGCCGG
TGGATGTGGAGAGAGGTTCCGAGGGGGCCGCGTTCCAGAAGGTAGGAGCG
TCCACGCTAGCTACGACGACAGCGGCGGAGGACAAGGAGTCCGTCTTGGC
GTGCGGTCGTCGCTCCAGCGGGACGTCCCCGGAACGAACCGTCAGTGCCG
GCGGCGGCGGCCGCGGCGATGTGTCGCAGGGTGCGGCGGCGGCGGCAGCG
GCGGCGGTAGCGACGGCCGAAGAAAGCGCGACGAAGCAGCTGCGTGAGGC
CAGCAGTTTCTGGTTGGACAAGTGGGGTATAAAGGCGGCAAAGACCGACG
CCACACGGGAAAGGCACTCAAAAGAATTCCGAGACAGCTATCCTTAG
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