mRNA_Ecto-sp13_S_contig6719.17616.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6719.17616.1
Unique NamemRNA_Ecto-sp13_S_contig6719.17616.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6719.17616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6719contigEcto-sp13_S_contig6719:4128..7315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_002610.1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463923.8528502-CDS-Ecto-sp13_S_contig6719:4127..46331681463923.8528502-CDS-Ecto-sp13_S_contig6719:4127..4633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6719 4128..4633 -
1681463923.8695152-CDS-Ecto-sp13_S_contig6719:5084..51281681463923.8695152-CDS-Ecto-sp13_S_contig6719:5084..5128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6719 5085..5128 -
1681463923.881825-CDS-Ecto-sp13_S_contig6719:7235..73151681463923.881825-CDS-Ecto-sp13_S_contig6719:7235..7315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6719 7236..7315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6719.17616.1prot_Ecto-sp13_S_contig6719.17616.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6719 4128..7315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6719.17616.1

>prot_Ecto-sp13_S_contig6719.17616.1 ID=prot_Ecto-sp13_S_contig6719.17616.1|Name=mRNA_Ecto-sp13_S_contig6719.17616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MPRWAGFRRQGRDDLFKVDRKRDAVRIKVKHIHVVGYEQLSSSCARFYEI
YADTQPPVTGDHSDRLADRAEYCFFCILSSRIPIQDSSSGLERLTRRSHT
HSSVPEGQHTRTTPPEPGRSSRKPQDKALPPVPTGLCATESAKSNQGVCW
GGRSGSSTRVWCVRVSLVFVFCLPRETRTSERRDGFGIQLAVDRQRGEHE
ERVGPLQPG*
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mRNA from alignment at Ecto-sp13_S_contig6719:4128..7315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6719.17616.1 ID=mRNA_Ecto-sp13_S_contig6719.17616.1|Name=mRNA_Ecto-sp13_S_contig6719.17616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3188bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6719:4128..7315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGCTGGGCGGGATTCAGGCGCCAAGGCAGGGATGACCTCTTCAA
GGTCGATCGCAAGCGGGATGCCGTACGAATGTCTCAGTCCCGATTCTTAC
CCAGCGACCGTTTACAAGAGATGGATGTCTGGCCGCTCCGGGAATGAAAT
GGTGGTTTCGGTGCTGCGTGTGGCACGATAGGATCTTGTTTCCTGATCAA
GATGCTCTCTGTTGCTTGGTCGATTTCCGTGGCGTTCGCTGTCTCTTCCC
GCTGCTACTAGCCTACAACAGCTGTAGAGCCAGCATTTAATGGTTTGTTC
GTTCAGCTGATCCTGGCTGTACACACCGCCCCCGCCATAACACCGCGCCC
CAGGGTTTTGACGCCGCCTGCAAGACCGTTTTGCTCTGTGTGGGCCAAAG
CGTTGTGGCGGCATTCCAAGTATTCCAGAAGTGGGCCGACCCTGTGGCTT
GGCTTACGATGAACCCCGACAAGAACGGTCGGTGCGCGATCCACGCGGGG
AGCATTTAAAGACTGCCGCGTGAGGTGTGACGATAGAGACGTAAGCATTG
ACGTGGCTGTGGAACATGTGTCCAACTCAGAATTGAGCGGTGATGCTTTC
AGCCGAACGAAGGAGGATCAAAGGCTGAACCAACCATTATTGGTAATGAA
ACACTGATACCGTCAACCATAAAAAAACGAAACACGCGACAGCGTATACC
GCCAGTGATGGGTGTTCACAAACCGAACGACGTAAGCAAACTGCCATGAG
GTCACGTTTACCTATGAGCGAACAACTCATGCGCCTCTTGTACACGATCG
CCTGAGAATGTGACGGCATTCACTTGTAATGCGCTCGATATAATGTACGT
CTTGCCGCAGGCCATGCGTCACACATGGTCCGTGATCAAGATGGACGCCG
CTCCGGTGTCAGGATGGATGTCCCGAGACCCGATTATGGGTTGCGACCCG
GACGACGAGATGGCCGAGAACATCCTCGCACACATATTCCTGGCGTGAGT
CTATGCTTGCATTCTTGGTTGCCGTAACTGCTGCTTTTTGAAGCAAAGAT
CGAGCTCAGCACGGTGGTTGTCATTTTGTATGCGTGGACCGAACTCATTT
CCATCTCTCGTTCTCCTTGTCCTTGATCCATCGTACATATTTTGGCACCC
CTCGCTATACTTGTCCAATATTCTTCTTTTCCGGCTGCTACCACGCCGCT
CACGACCTTGTGCAGCACCCGGCTTGGCCTCCCGAGGTGTGCCATAGATG
AGATCCTCGAGGAAACCTTAAAGGCTGGTCCGCACGGCCCGGCCGTCTCC
ATTTTCGTGGTCCTGTCTCTGCTGTGCTTGGCGGAGAAGCAGGGTGCGTG
GGATGCCGACGAGGTAAACGAAGGTTGTTTGCACTCGATAGTGACGCAGA
TATATGCATAGACTGTCGTTGATGCCCGCGTCTGACCGATACTCTGTGCA
GTTACCGCCGTGGCTTCATCACCCTCCTTCTCCTACAACCATCGGTTGCT
ACATGTATGCCGTGCACAAGCTTGCCGTGCCACACCAACCAATTGATACT
TTTTTCTTCCATCTTGGGAAGGAAACTGCAACCGACGCTTCTCCCCCTCC
CCCTCCCTAGTTTTGTGTTTGTCTGCGAGGAGCACCGAAGCTGTGTACCA
AAATATACCTACAGTTTCATGAAAATACCAAGGGACCGCTTTCGCAACCC
AATCGCTGCCTGCGTACCTCCCTGGTGCCCCATCATGCCAGGTGGTGATG
ATGAAGGTCCCCCTAATGTCAGGCGCTACTACTGCAGGTACTGCCGTCAG
GTGCGCTGCCTTTGTTCGTGTATCGTGGTGAACATCTCTGTCTCGTCCTT
CGATATTAGGTGTTGTTCCCCCATCTTCGGTCTCTGCCTTCCTTTGTGCG
ATACATGCTCTTCTTCTTCATGCTGCTATTTGAGTAACCATCGGAGTTTT
TTTGTATTGTTGAAACGTGTTGGATAAACCACACAATCAATCGGGGAAGT
TGGGGTTAGGGATCGGCAGTCGGTCCTCCTGTAATTTCGCACTCACTCCT
CTTAAGGTCGGCTTTTGCCGTATTCCAGAGAGGGCTGGATGTAGAAATGG
TGGGGTGGGAGAGCGAATGCTGCTGCTGTGTAACCACAGCTAGCTATGTA
AGATCCATGCATACGTGTGTTCATCGTCCGATCCAAGCAAGGTAAAACAC
ATACATGTTGTAGGGTATGAACAATTATCGAGTGCTCATGTTTTCATCAG
ACTGTCAGTGTGTATGACTCGAAACAAGCCCAGTACCCAGCCAGCCGGTT
TCTCTCCGCTCATAGCAAAGACTCCAACACATTCCGTTCGACTGCGGTGA
TATCTCGAACGGGTAGTTACTTTTTATTTTTCCTGTGTTGTGAAACACAT
TGCTTCTTACTATAAAATACTTCAGTTTTTAATGTTTACGTGTTCATGTA
AAAGGATCTCCTTGGCTGCACGAGAAAACCTGTATCAGAACCCTTCAGAG
AGTGGGTATAGCGATTGCAAAGCTGCTGCGACGCCTCTGGTCAAAAGAAC
CAAACAACCACAGGTTGGGCGACGGGTGATGGTTGACTACGTTGGGCGTC
ACTCAGCAATCCCTCCCGGCAGCAGCCAGCCCCCGCTCTCTCGTTGGCAG
CTGTAACTCTGACACGGCCGGCGCAACTACAGGTAGCTGTGCGAGATTCT
ACGAAATCTACGCAGACACGCAACCGCCGGTGACTGGCGACCATTCGGAC
CGCCTGGCCGACAGAGCAGAATATTGTTTTTTTTGTATTTTGTCCAGCCG
CATTCCGATTCAAGACAGCAGTAGTGGACTCGAGAGACTCACTCGCAGGA
GCCACACACACAGCAGTGTTCCAGAGGGACAACACACGCGTACAACACCT
CCGGAGCCCGGGAGATCAAGCAGGAAGCCGCAAGACAAAGCATTGCCCCC
GGTGCCGACCGGACTTTGTGCCACAGAATCTGCAAAAAGCAACCAAGGGG
TGTGTTGGGGTGGGAGATCCGGATCCTCCACACGGGTGTGGTGTGTGCGC
GTTAGCCTCGTTTTTGTGTTTTGCCTCCCGCGGGAGACGAGGACAAGCGA
GAGGCGGGACGGGTTTGGGATCCAGTTGGCGGTGGATCGGCAGAGGGGGG
AACACGAAGAACGAGTCGGTCCGCTGCAACCCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6719:4128..7315-

>mRNA_Ecto-sp13_S_contig6719.17616.1 ID=mRNA_Ecto-sp13_S_contig6719.17616.1|Name=mRNA_Ecto-sp13_S_contig6719.17616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6719:4128..7315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGCTGGGCGGGATTCAGGCGCCAAGGCAGGGATGACCTCTTCAA
GGTCGATCGCAAGCGGGATGCCGTACGAATCAAGGTAAAACACATACATG
TTGTAGGGTATGAACAATTATCGAGTAGCTGTGCGAGATTCTACGAAATC
TACGCAGACACGCAACCGCCGGTGACTGGCGACCATTCGGACCGCCTGGC
CGACAGAGCAGAATATTGTTTTTTTTGTATTTTGTCCAGCCGCATTCCGA
TTCAAGACAGCAGTAGTGGACTCGAGAGACTCACTCGCAGGAGCCACACA
CACAGCAGTGTTCCAGAGGGACAACACACGCGTACAACACCTCCGGAGCC
CGGGAGATCAAGCAGGAAGCCGCAAGACAAAGCATTGCCCCCGGTGCCGA
CCGGACTTTGTGCCACAGAATCTGCAAAAAGCAACCAAGGGGTGTGTTGG
GGTGGGAGATCCGGATCCTCCACACGGGTGTGGTGTGTGCGCGTTAGCCT
CGTTTTTGTGTTTTGCCTCCCGCGGGAGACGAGGACAAGCGAGAGGCGGG
ACGGGTTTGGGATCCAGTTGGCGGTGGATCGGCAGAGGGGGGAACACGAA
GAACGAGTCGGTCCGCTGCAACCCGGGTGA
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