mRNA_Ecto-sp13_S_contig66899.17565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66899.17565.1
Unique NamemRNA_Ecto-sp13_S_contig66899.17565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66899.17565.1 vs. uniprot
Match: A0A6H5L4Q1_9PHAE (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.290e-24
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VGGTCAVCSKDVCAQCSLFYAVRLCGHCARAHRASLPSELHRIVD 135
            VGGTCAVCSKDVCAQCSLFYAVRLCGHCARAH+ASLPSELHRIVD
Sbjct:   32 VGGTCAVCSKDVCAQCSLFYAVRLCGHCARAHKASLPSELHRIVD 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66899.17565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4Q1_9PHAE1.290e-2497.78Cysteine-rich DPF motif domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66899contigEcto-sp13_S_contig66899:374..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.5988994-CDS-Ecto-sp13_S_contig66899:373..5081681463919.5988994-CDS-Ecto-sp13_S_contig66899:373..508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66899 374..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66899.17565.1prot_Ecto-sp13_S_contig66899.17565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66899 374..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66899.17565.1

>prot_Ecto-sp13_S_contig66899.17565.1 ID=prot_Ecto-sp13_S_contig66899.17565.1|Name=mRNA_Ecto-sp13_S_contig66899.17565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
VGGTCAVCSKDVCAQCSLFYAVRLCGHCARAHRASLPSELHRIVD
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mRNA from alignment at Ecto-sp13_S_contig66899:374..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66899.17565.1 ID=mRNA_Ecto-sp13_S_contig66899.17565.1|Name=mRNA_Ecto-sp13_S_contig66899.17565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66899:374..508- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGAGGGACGTGCGCTGTTTGCTCCAAGGATGTGTGCGCTCAGTGTAG
CTTGTTCTACGCCGTGAGGCTCTGCGGCCACTGCGCGCGAGCGCACAGGG
CAAGCTTGCCCTCGGAACTGCATCGCATCGTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66899:374..508-

>mRNA_Ecto-sp13_S_contig66899.17565.1 ID=mRNA_Ecto-sp13_S_contig66899.17565.1|Name=mRNA_Ecto-sp13_S_contig66899.17565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66899:374..508- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGAGGGACGTGCGCTGTTTGCTCCAAGGATGTGTGCGCTCAGTGTAG
CTTGTTCTACGCCGTGAGGCTCTGCGGCCACTGCGCGCGAGCGCACAGGG
CAAGCTTGCCCTCGGAACTGCATCGCATCGTGGAC
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