mRNA_Ecto-sp13_S_contig66897.17564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66897.17564.1
Unique NamemRNA_Ecto-sp13_S_contig66897.17564.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: D8LJ06_ECTSI (CCT-beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ06_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.390e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            +QIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEV  G
Sbjct:  297 EQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVMIG 351
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A6H5L2I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.060e-21
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   28 MAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            MAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEV  G
Sbjct:    1 MAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVMIG 46
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A836CDN2_9STRA (CCT-beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.030e-21
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            +QIFAEAGVMAIEHADFEGVERLAAVTG A ASTF+HPELAVLGECK IEEV  G
Sbjct:  297 EQIFAEAGVMAIEHADFEGVERLAAVTGAAIASTFEHPELAVLGECKVIEEVMIG 351
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A482QWT2_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482QWT2_9EURY)

HSP 1 Score: 88.6 bits (218), Expect = 1.930e-20
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            +Q+FAE+GVMAIEHADF+G+ERLAAVTGG  ASTF+HPEL  LGECK IEE+  G
Sbjct:   75 EQLFAESGVMAIEHADFDGIERLAAVTGGEVASTFEHPELVALGECKLIEEILIG 129
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A7S1BZ54_9STRA (CCT-beta n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZ54_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.500e-20
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            +QIFAEAGVMAIEHADF+G+ERLAAVTGG  ASTFDHPEL  LGEC+ IEEV  G
Sbjct:  297 EQIFAEAGVMAIEHADFDGIERLAAVTGGEVASTFDHPELITLGECEVIEEVMIG 351
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A7S1BYY4_9STRA (CCT-beta n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYY4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.260e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEV 156
            +QIFAEAGVMAIEHADF+G+ERLAAVTGG  ASTFDHPEL  LGEC+ IEEV
Sbjct:  297 EQIFAEAGVMAIEHADFDGIERLAAVTGGEVASTFDHPELITLGECEVIEEV 348
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A7R9WNM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNM2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.920e-19
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            + +FAEAGVMAIEHADFEGVERL+AVTGG   STFD PEL  LGEC  +EEV  G
Sbjct:   45 ESLFAEAGVMAIEHADFEGVERLSAVTGGDVVSTFDAPELVTLGECDVVEEVLIG 99
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: I2CP43_NANGC (CCT-beta n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP43_NANGC)

HSP 1 Score: 86.7 bits (213), Expect = 2.050e-18
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            +QIF EAG+M+IEHADFEGVERLAAVTGG  ASTF+HPEL  LGEC  IEE+  G
Sbjct:  298 EQIFTEAGIMSIEHADFEGVERLAAVTGGEIASTFEHPELVALGECSLIEEILIG 352
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A7S1Y2W1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2W1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.380e-18
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            + IFAE G+MAIEHADFEGVE+LAAVTGG   STFDHPEL  LGEC  IEE+  G
Sbjct:   27 ESIFAENGIMAIEHADFEGVEQLAAVTGGEVVSTFDHPELVTLGECDLIEEIMIG 81
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BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Match: A0A7S2RXR6_9STRA (CCT-beta n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RXR6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.840e-18
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QQIFAEAGVMAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAG 165
            + IFAE G+MAIEHADF+G+ERLAAVTGG  ASTFDHPEL  LGEC  IEE+  G
Sbjct:  296 ESIFAERGIMAIEHADFDGIERLAAVTGGEVASTFDHPELVTLGECDVIEEIMIG 350
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66897.17564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ06_ECTSI1.390e-2494.55CCT-beta n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5L2I8_9PHAE1.060e-2195.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDN2_9STRA2.030e-2187.27CCT-beta n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
A0A482QWT2_9EURY1.930e-2074.55Uncharacterized protein (Fragment) n=1 Tax=Methano... [more]
A0A7S1BZ54_9STRA6.500e-2080.00CCT-beta n=3 Tax=Corethron hystrix TaxID=216773 Re... [more]
A0A7S1BYY4_9STRA1.260e-1982.69CCT-beta n=2 Tax=Corethron hystrix TaxID=216773 Re... [more]
A0A7R9WNM2_9STRA8.920e-1972.73Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
I2CP43_NANGC2.050e-1874.55CCT-beta n=1 Tax=Nannochloropsis gaditana (strain ... [more]
A0A7S1Y2W1_9STRA3.380e-1872.73Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2RXR6_9STRA3.840e-1872.73CCT-beta n=1 Tax=Eucampia antarctica TaxID=49252 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66897contigEcto-sp13_S_contig66897:269..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score89.7
Seed ortholog evalue4.2e-16
Seed eggNOG ortholog2880.D8LJ06
Preferred nameCCT2
Model size183
KEGG koko:K09494
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0000323,GO:0001775,GO:0002199,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0006887,GO:0006955,GO:0007338,GO:0007339,GO:0008037,GO:0008144,GO:0008150,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0017076,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0022414,GO:0022607,GO:0030141,GO:0030312,GO:0030554,GO:0031224,GO:0031225,GO:0031226,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031625,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034622,GO:0034774,GO:0035036,GO:0035578,GO:0035639,GO:0036094,GO:0036230,GO:0042119,GO:0042582,GO:0043085,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044093,GO:0044183,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045055,GO:0045321,GO:0045935,GO:0046658,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051084,GO:0051086,GO:0051128,GO:0051130,GO:0051131,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060205,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0071944,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0097159,GO:0097367,GO:0097708,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0101031,GO:1901265,GO:1901363,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons1
EggNOG free text desc.chaperone mediated protein folding independent of cofactor
EggNOG OGsCOG0459@1,KOG0363@2759
Cds size156
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.53883-UTR-Ecto-sp13_S_contig66897:268..2951681463919.53883-UTR-Ecto-sp13_S_contig66897:268..295Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig66897 269..295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.5672455-CDS-Ecto-sp13_S_contig66897:295..4511681463919.5672455-CDS-Ecto-sp13_S_contig66897:295..451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66897 296..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66897.17564.1prot_Ecto-sp13_S_contig66897.17564.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66897 296..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66897.17564.1

>prot_Ecto-sp13_S_contig66897.17564.1 ID=prot_Ecto-sp13_S_contig66897.17564.1|Name=mRNA_Ecto-sp13_S_contig66897.17564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MAIEHADFEGVERLAAVTGGATASTFDHPELAVLGECKKIEEVRAGLPCA
T*
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mRNA from alignment at Ecto-sp13_S_contig66897:269..451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66897.17564.1 ID=mRNA_Ecto-sp13_S_contig66897.17564.1|Name=mRNA_Ecto-sp13_S_contig66897.17564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66897:269..451+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAGATTTTCGCGGAGGCTGGAGTGATGGCGATCGAGCACGCGGACTT
CGAAGGGGTGGAGCGACTGGCGGCGGTAACCGGCGGAGCCACGGCGTCGA
CCTTCGACCACCCAGAGCTGGCGGTGCTCGGGGAGTGTAAGAAGATCGAG
GAGGTGCGTGCGGGGCTACCGTGTGCGACATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66897:269..451+

>mRNA_Ecto-sp13_S_contig66897.17564.1 ID=mRNA_Ecto-sp13_S_contig66897.17564.1|Name=mRNA_Ecto-sp13_S_contig66897.17564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66897:269..451+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATCGAGCACGCGGACTTCGAAGGGGTGGAGCGACTGGCGGCGGT
AACCGGCGGAGCCACGGCGTCGACCTTCGACCACCCAGAGCTGGCGGTGC
TCGGGGAGTGTAAGAAGATCGAGGAGGTGCGTGCGGGGCTACCGTGTGCG
ACATAA
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