mRNA_Ecto-sp13_S_contig6686.17560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: D8LMZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ1_ECTSI) HSP 1 Score: 444 bits (1142), Expect = 1.300e-143 Identity = 231/250 (92.40%), Postives = 240/250 (96.00%), Query Frame = 1
Query: 1 GDARYITVKRKKNGGXXDGDDAERPPMLQLGNARDATLKAYFSRHPPSRREAETVMSAAVGGGMHAAAELATQKRHKAALLDRQAKAVTSPGASAQELQRRASVYNAAQSKRQRAAGHQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDE 750
GDAR ITVK+ XXDG+ A+RPPMLQLGNARDA LKAYFSRHPPSRREA+TVMSAAVGGGMHAAAELATQKRHKAALLDRQAKAVTSPGASAQELQRR S+YNAAQS+RQRAAGHQRMSAFRQGLPAWEYRDTIV MV+DHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGE+IGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPML+EFTHVLIDE
Sbjct: 108 GDARDITVKKXXXXXXXDGNGAQRPPMLQLGNARDAALKAYFSRHPPSRREADTVMSAAVGGGMHAAAELATQKRHKAALLDRQAKAVTSPGASAQELQRRTSMYNAAQSRRQRAAGHQRMSAFRQGLPAWEYRDTIVNMVRDHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGEKIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLKEFTHVLIDE 357
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: A0A6H5JK76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK76_9PHAE) HSP 1 Score: 218 bits (555), Expect = 4.400e-60 Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 1
Query: 433 QACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDEASHG 762
QACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPML+EFTHVLIDEAS G
Sbjct: 5 QACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLKEFTHVLIDEASDG 114
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: A0A835Z8N8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N8_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.670e-52 Identity = 134/351 (38.18%), Postives = 165/351 (47.01%), Query Frame = 1
Query: 1 GDARYITVKRKKNGGXXDGDDAERPPMLQLGNARDATLKAYFSRHPPSRREAETVMSAAV-GGGMHAAAELATQKRHKAALLDRQAKAVTSPGASAQELQRRASVYNAAQSKRQRAAGHQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQV----------------------------------------------------------------------------------------------------PQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDE 750
GD+RYITV++ K G G E P + +L R L YF HP E VM A GGG+H AAELA Q R + +A + GA EL+ R Y AAQ +R+R +Q+M RQ LPAW Y ++I+++++ HQ LVSGETGCGKSTQV PQF+LDD + G C I CTQPRRISAIAVAERIAEER E G VGYTIRLES++S QL +MTPG+LLKKL DPML+++THV+IDE
Sbjct: 67 GDSRYITVRKAKKAGNAGG---ELPRLGELDLPRQVALATYFQAHPAGDEEMGAVMQLATEGGGIHTAAELAKQVRQQRT----KAAGAAASGAGEAELKTRERCYLAAQERRRRQPQYQQMLRCRQNLPAWGYCESILELIRAHQVVLVSGETGCGKSTQVNCCGDSVLARVHMHTLASLPIVQRCEYVDCAAHCGVRDRGTRIGSTSAFLPIVRLRQEYAGATVHPGRRSAGGALHDRVRAAAPHLNRCNRRNRRAAEQVPQFILDDAAQGARCMIACTQPRRISAIAVAERIAEERCEEAGAVVGYTIRLESAMSSSVQLCMMTPGVLLKKLNTDPMLQQYTHVIIDE 410
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: W7TIW9_9STRA (Atp-dependent rna helicase dhx57 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIW9_9STRA) HSP 1 Score: 170 bits (430), Expect = 2.850e-43 Identity = 108/283 (38.16%), Postives = 150/283 (53.00%), Query Frame = 1
Query: 10 RYITVKRK-KNG--GXXDGDDAERPPMLQLGNARDATLKAYFSRHPPSRREAETVMSAAVG----------------------GGMHAAAEL-----------ATQKRHKAALLDRQAKAVTSPGASAQELQRRASVYNAAQSKRQRAAGHQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDE 750
R+ITV +K K G G +D +R P L L+ + +RH +E E ++ + GG A+L A L ++ + + P + L RR + + Q++R R + M R LPA E+ + ++V+ H +VSGETGCGKSTQVPQF+LDDP +GP K+ TQPRRISA+AVAER+A ER E +G T+GY IRLES VS+ +Q+V MTPG+LL+KLG D LREF ++IDE
Sbjct: 128 RFITVSKKPKKGPHGDEQDEDLDRYPPFHLKKESLGLLRRHLARHAVRSQEREALLQQCISRSASSEATNTCAGNPTAVERGRGGAVRVADLRDPGPTPGGRAAVPATQTGQSLSKKQQRLYDPAMEEERLVRRCAEHAEKQARRDRHPRYASMLQARGRLPAAEHAALVTRLVKTHPVVVVSGETGCGKSTQVPQFMLDDPDVGPSLKMAVTQPRRISAVAVAERVAAERMEAVGQTIGYNIRLESEVSEQSQVVFMTPGVLLRKLGGDRELREFNVIMIDE 410
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: A0A7S3MHY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHY3_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.430e-42 Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = 1
Query: 322 AQSKRQRAAG--HQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPM 717
A+S+RQRAA + + R LPA YR+ + ++++HQ L+SGETGCGKSTQVPQFLLDD +IGP C++ TQPRRISA+AVAERIA ER E +G TVGY+IRL+S S TQ+ MT G+LL+K+ DP+
Sbjct: 33 AESQRQRAANSNYHSIQKKRSALPASHYREAVCNLLKEHQIVLISGETGCGKSTQVPQFLLDDETIGPSCRMAITQPRRISAVAVAERIASERSETVGTTVGYSIRLDSEKSARTQVTFMTAGVLLRKVRFDPL 166
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: F0YGX1_AURAN (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGX1_AURAN) HSP 1 Score: 153 bits (386), Expect = 1.800e-41 Identity = 76/137 (55.47%), Postives = 95/137 (69.34%), Query Frame = 1
Query: 361 MSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDEASHGPRE 771
M A R LPAWEYRD + +V H LV+GETGCGKSTQVPQF+LD P +I C+QPRRISA+AVAER+A ERG ++G VG+ +R ESS S T+L TPG+LL+KLG DP L +TH ++DE R+
Sbjct: 2 MLAARMKLPAWEYRDRVAALVAAHDVVLVAGETGCGKSTQVPQFVLDGD---PEARIACSQPRRISAMAVAERVASERGSQLGREVGFHVRFESSFSDATRLCFATPGVLLRKLGSDPDLVAYTHFILDEVHEEDRD 135
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: A0A7S2UJW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJW6_9STRA) HSP 1 Score: 163 bits (412), Expect = 4.830e-41 Identity = 83/145 (57.24%), Postives = 106/145 (73.10%), Query Frame = 1
Query: 319 AAQSKRQRAAGHQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKD-TQLVLMTPGILLKKLGRDPMLREFTHVLIDE 750
A+Q ++ ++M RQ LPA+ Y ++I K VQ H +++G+TGCGKSTQVPQFLLDDP+IGP C IV TQPRRISAI+VAER+A E+ TVGY +RLESS S D TQLV +TPGILL+KL P L E+TH+++DE
Sbjct: 6 ASQKAKRHDPSFKQMLKHRQQLPAFSYAESICKSVQSHAVTILTGDTGCGKSTQVPQFLLDDPTIGPTCNIVITQPRRISAISVAERVASEQCSSSSKTVGYQVRLESSFSPDETQLVFVTPGILLRKLQSSPSLSEYTHIILDE 150
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: A0A8J2WKW7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WKW7_9STRA) HSP 1 Score: 162 bits (411), Expect = 8.980e-41 Identity = 101/243 (41.56%), Postives = 127/243 (52.26%), Query Frame = 1
Query: 64 AERPPMLQLGNARDATLKAYFSRHPPSRREAETVMSAAVGG-------GMHAAAELATQKRHKAALLDRQAKAVTSPGASAQELQRRASVYNAAQSKRQRAAGHQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDDPSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDEASHGPRE 771
AE P L L L A+F HPP+ E V G + + RHK+ RA+V + A++K + A M RQ LPAWE R +V +V+ H LV+GETGCGKSTQVPQFL D + I C+QPRR+SAIAVAER+A ERGE G TVGY +R ESS S T+L+ TPG+LL+KLG DP L +TH L+DE R+
Sbjct: 78 AEDAPRLDLAKDAAVVLDAHFRAHPPTPEELNDAREGRVADAKPSPEPGTVRSTLRNVKNRHKS----------------------RAAVIDYAKTKPECATAPSAMRKARQKLPAWEARSKVVDLVKRHDVVLVAGETGCGKSTQVPQFLFDASACE--ASIACSQPRRLSAIAVAERVAAERGETCGSTVGYQVRFESSFSAKTRLLFATPGVLLRKLGSDPDLVSYTHFLLDEVHEEDRD 296
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: A0A8J9RMQ1_9CHLO (3'-5' RNA helicase YTHDC2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RMQ1_9CHLO) HSP 1 Score: 161 bits (408), Expect = 2.300e-40 Identity = 104/253 (41.11%), Postives = 146/253 (57.71%), Query Frame = 1
Query: 1 GDARYITVKRKKNGGXXDGDDAERPPMLQLGNARDATLKAYFSRHPPSRREAETVMSAAVGGGMHAAAELATQKRHKAALLDRQAKAVTSPGA--SAQELQRRASVYNAAQSKRQRAAGHQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDDP-SIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDE 750
GD+R +TV + G D + P + A L+AY+ RH P E + GGG+ + Q + L + + T+ A S QE++R+ +AA K Q+A +++ R LP YR I++ + HQ LV+GETGCGK+TQVPQFLL+D + G GC+I+CTQPRRISAI++AER+A ERGER G TVGYTIRLES + L+ T G+LL+ L + L + THV++DE
Sbjct: 78 GDSRQVTVSKPAASGQLAKDTFDLP----VSPASLEVLQAYYERHLPKEEELTAIQQ---GGGVTSLGAADHQVHQQ---LGGRKRGTTTGAAHFSEQEVRRQ----HAAWQKAQQAPAVTAITSTRNSLPIAPYRSDILQAIASHQVVLVAGETGCGKTTQVPQFLLEDAWAAGRGCRIMCTQPRRISAISIAERVAAERGERCGTTVGYTIRLESKGGPASSLMFCTNGVLLRMLTQGEGLNDITHVIVDE 316
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Match: UPI001442EEED (LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase DHX57 n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI001442EEED) HSP 1 Score: 160 bits (404), Expect = 7.800e-40 Identity = 77/145 (53.10%), Postives = 104/145 (71.72%), Query Frame = 1
Query: 331 KRQRAAGHQRMSAFRQGLPAWEYRDTIVKMVQDHQACLVSGETGCGKSTQVPQFLLDD-----PSIGPGCKIVCTQPRRISAIAVAERIAEERGERIGGTVGYTIRLESSVSKDTQLVLMTPGILLKKLGRDPMLREFTHVLIDE 750
++Q + +++M R+ LPAW D I++M+ +HQ ++SGETGCGKSTQVPQFLLDD P++ I+CTQPRRISA+ VA+R+A ER ERIG TVGY IRLES +S T+L T GILL++L +P L + THV++DE
Sbjct: 411 EKQNSPKYKKMKEIRRKLPAWSKMDNILEMIHEHQVTIISGETGCGKSTQVPQFLLDDWILNRPTLKEHVNIICTQPRRISAVGVAKRVASERDERIGDTVGYQIRLESKMSNKTRLTFCTTGILLQRLSMNPELNDVTHVIVDE 555 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6686.17560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6686.17560.1 >prot_Ecto-sp13_S_contig6686.17560.1 ID=prot_Ecto-sp13_S_contig6686.17560.1|Name=mRNA_Ecto-sp13_S_contig6686.17560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp GDARYITVKRKKNGGGGDGDDAERPPMLQLGNARDATLKAYFSRHPPSRRback to top mRNA from alignment at Ecto-sp13_S_contig6686:3307..7320+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6686.17560.1 ID=mRNA_Ecto-sp13_S_contig6686.17560.1|Name=mRNA_Ecto-sp13_S_contig6686.17560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6686:3307..7320+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6686:3307..7320+ >mRNA_Ecto-sp13_S_contig6686.17560.1 ID=mRNA_Ecto-sp13_S_contig6686.17560.1|Name=mRNA_Ecto-sp13_S_contig6686.17560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6686:3307..7320+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |