mRNA_Ecto-sp13_S_contig66855.17559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66855.17559.1
Unique NamemRNA_Ecto-sp13_S_contig66855.17559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: A0A0D2MAY7_9CHLO (H+-transporting ATPase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MAY7_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 1.330e-15
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q   EG IV RL SI E+AGM+ LCSDKTGTLT+NKMV+QEDCP+Y  G
Sbjct:  293 GSRQLSQEGAIVTRLASIEEMAGMNMLCSDKTGTLTLNKMVIQEDCPIYTPG 344
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BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: A0A0D2MTZ3_9CHLO (Plasma membrane ATPase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MTZ3_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 1.860e-15
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q   EG IV RL SI E+AGM+ LCSDKTGTLT+NKMV+QEDCP+Y  G
Sbjct:  279 GSRQLSQEGAIVTRLASIEEMAGMNMLCSDKTGTLTLNKMVIQEDCPIYTPG 330
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: A0A7S3XUR3_HETAK (Plasma membrane ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUR3_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 4.750e-15
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q   +G IVARL +I E+AGM+ LCSDKTGTLT+NKMV+Q+DCP +MDG
Sbjct:  317 GSRQLTEKGAIVARLSAIEEMAGMNMLCSDKTGTLTLNKMVIQDDCPTFMDG 368
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BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: A0A2V0P215_9CHLO (Plasma membrane ATPase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P215_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 6.500e-15
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q   EG IV RL SI E+AGM+ LCSDKTGTLT+NKMV+Q+DCP+Y  G
Sbjct:  290 GSRQLSQEGAIVTRLASIEEMAGMNMLCSDKTGTLTLNKMVIQDDCPIYTAG 341
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BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: A0A2V0PEA9_9CHLO (Plasma membrane ATPase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PEA9_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 6.500e-15
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q   EG IV RL SI E+AGM+ LCSDKTGTLT+NKMV+Q+DCP+Y  G
Sbjct:  288 GSRQLSQEGAIVTRLASIEEMAGMNMLCSDKTGTLTLNKMVIQDDCPIYTAG 339
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BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: A0A383VWQ7_TETOB (Plasma membrane ATPase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VWQ7_TETOB)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q  + G IV RL SI E+AGM+ LCSDKTGTLT+NKMV+Q+DCP+Y  G
Sbjct:  318 GSRQLSAHGAIVTRLASIEEMAGMNMLCSDKTGTLTLNKMVIQDDCPIYTPG 369
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: A0A7J7QFP0_9CHLO (P-type H(+)-exporting transporter n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QFP0_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q  + G IV RL SI E+AGM+ LCSDKTGTLT+NKMV+Q+DCP+Y  G
Sbjct:  430 GSRQLSAHGAIVTRLASIEEMAGMNMLCSDKTGTLTLNKMVIQDDCPIYTPG 481
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: I0YZ69_COCSC (Plasma membrane ATPase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZ69_COCSC)

HSP 1 Score: 74.7 bits (182), Expect = 3.090e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q  ++G IV RL +I E+AGM+ LCSDKTGTLT+N+MV+QEDCP+Y +G
Sbjct:  278 GSRQLAAQGAIVTRLTAIEEMAGMTLLCSDKTGTLTLNQMVIQEDCPLYAEG 329
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BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: L1I809_GUITC (Plasma membrane ATPase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I809_GUITC)

HSP 1 Score: 73.9 bits (180), Expect = 5.770e-14
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q  + G IV RL SI E+AGM  LCSDKTGTLT+NKMV+QEDCP Y  G
Sbjct:  289 GSRQLSARGAIVTRLGSIEEMAGMDMLCSDKTGTLTLNKMVIQEDCPTYSPG 340
[Close]
BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Match: L1IXM4_GUITC (Plasma membrane ATPase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IXM4_GUITC)

HSP 1 Score: 73.9 bits (180), Expect = 5.770e-14
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   22 GGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQEDCPVYMDG 177
            G +Q  + G IV RL SI E+AGM  LCSDKTGTLT+NKMV+QEDCP Y  G
Sbjct:  304 GSRQLSARGAIVTRLGSIEEMAGMDMLCSDKTGTLTLNKMVIQEDCPTYSPG 355
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66855.17559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2MAY7_9CHLO1.330e-1567.31H+-transporting ATPase n=1 Tax=Monoraphidium negle... [more]
A0A0D2MTZ3_9CHLO1.860e-1567.31Plasma membrane ATPase n=1 Tax=Monoraphidium negle... [more]
A0A7S3XUR3_HETAK4.750e-1565.38Plasma membrane ATPase (Fragment) n=1 Tax=Heterosi... [more]
A0A2V0P215_9CHLO6.500e-1565.38Plasma membrane ATPase n=1 Tax=Raphidocelis subcap... [more]
A0A2V0PEA9_9CHLO6.500e-1565.38Plasma membrane ATPase n=1 Tax=Raphidocelis subcap... [more]
A0A383VWQ7_TETOB1.660e-1463.46Plasma membrane ATPase n=1 Tax=Tetradesmus obliquu... [more]
A0A7J7QFP0_9CHLO1.660e-1463.46P-type H(+)-exporting transporter n=1 Tax=Scenedes... [more]
I0YZ69_COCSC3.090e-1461.54Plasma membrane ATPase n=1 Tax=Coccomyxa subellips... [more]
L1I809_GUITC5.770e-1465.38Plasma membrane ATPase n=1 Tax=Guillardia theta (s... [more]
L1IXM4_GUITC5.770e-1465.38Plasma membrane ATPase n=1 Tax=Guillardia theta (s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66855contigEcto-sp13_S_contig66855:460..636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score75.1
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog248742.XP_005648232.1
Model size177
KEGG koko:K01535
KEGG TC3.A.3.3
KEGG Pathwayko00190,map00190
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Plasma membrane ATPase
EggNOG OGs34JNJ@3041,37I59@33090,COG0474@1,KOG0205@2759
EC3.6.3.6
Cds size177
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463919.0433223-CDS-Ecto-sp13_S_contig66855:459..6361681463919.0433223-CDS-Ecto-sp13_S_contig66855:459..636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66855 460..636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66855.17559.1prot_Ecto-sp13_S_contig66855.17559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66855 460..636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66855.17559.1

>prot_Ecto-sp13_S_contig66855.17559.1 ID=prot_Ecto-sp13_S_contig66855.17559.1|Name=mRNA_Ecto-sp13_S_contig66855.17559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MTTGTPTGGQQTHSEGTIVARLVSINELAGMSTLCSDKTGTLTMNKMVVQ
EDCPVYMDG
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mRNA from alignment at Ecto-sp13_S_contig66855:460..636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66855.17559.1 ID=mRNA_Ecto-sp13_S_contig66855.17559.1|Name=mRNA_Ecto-sp13_S_contig66855.17559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66855:460..636- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGACGGGTACACCAACGGGGGGGCAACAAACGCACAGCGAGGGAAC
CATCGTGGCCAGGCTGGTGTCCATCAACGAGCTCGCCGGGATGAGCACGC
TCTGCTCCGATAAGACGGGGACGCTGACGATGAACAAGATGGTCGTCCAG
GAGGACTGCCCCGTGTACATGGACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66855:460..636-

>mRNA_Ecto-sp13_S_contig66855.17559.1 ID=mRNA_Ecto-sp13_S_contig66855.17559.1|Name=mRNA_Ecto-sp13_S_contig66855.17559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66855:460..636- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGACGGGTACACCAACGGGGGGGCAACAAACGCACAGCGAGGGAAC
CATCGTGGCCAGGCTGGTGTCCATCAACGAGCTCGCCGGGATGAGCACGC
TCTGCTCCGATAAGACGGGGACGCTGACGATGAACAAGATGGTCGTCCAG
GAGGACTGCCCCGTGTACATGGACGGG
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