mRNA_Ecto-sp13_S_contig6685.17558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6685.17558.1 vs. uniprot
Match: D7FJR5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR5_ECTSI) HSP 1 Score: 440 bits (1132), Expect = 5.980e-151 Identity = 248/265 (93.58%), Postives = 253/265 (95.47%), Query Frame = 1
Query: 1 MGTLRALVGFLALIGANKVLSFVPGGQLNVARSSRRVDRLSWSITRCSGARPLAASVPNGIGEGKRVGFASGLEEXXXXXX-AADGEPKAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPEASGSKTAAPGASEEEKELLMLQQADESLRKAQEEIERKVGKL 792
MGT RALVGFLALIGA +VLSFVPGGQLNVAR SR +D LSW+ TRCSGARPLAASVPNG+GEGKRVGFASG E+XXXXXX ADGE KAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPEASGSK AAPGASEEEKELLMLQQADESLRKAQEEIER VGKL
Sbjct: 1 MGTFRALVGFLALIGAKRVLSFVPGGQLNVARFSRSIDGLSWATTRCSGARPLAASVPNGVGEGKRVGFASGSEDXXXXXXXGADGETKAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPEASGSKKAAPGASEEEKELLMLQQADESLRKAQEEIERNVGKL 265
BLAST of mRNA_Ecto-sp13_S_contig6685.17558.1 vs. uniprot
Match: A0A7S1UHH8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHH8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.190e-15 Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 1
Query: 274 QTVNARLLAQIEEQGKGIVIPTEE-SKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGEL 651
+++NA+ +++E G ++ EE + K +R E DLNG NP A LGAG A +S +W+ T + AY ESD R++ +KQ VVGL +L G+FGV ALG+G++ A +AVG+++GEL
Sbjct: 31 ESINAQSGLEVDEDG--VLQNAEEVTGKFERVEVDLNGTNPLQAFLGAGLAGLLSTVAWRFTTFSIDAYAKATPTESDFYLTNRLSGVMKQVVVGLGSLATGVFGVIALGLGLLGARIAVGISRGEL 155
BLAST of mRNA_Ecto-sp13_S_contig6685.17558.1 vs. uniprot
Match: A0A7S4B5P2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5P2_CHRCT) HSP 1 Score: 71.2 bits (173), Expect = 3.950e-10 Identity = 51/138 (36.96%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 253 GEPKAKLQTVNARLLAQIEEQGKGIVIPTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPE 666
G+P +K N LLA+I+ ++ PT E K DLNG+ P ++GA A + +W+ T+ + PAEES V R+T + VV + ALGAG+ G+ ++G +A VA+GV KGELDP+ E
Sbjct: 113 GQPTSK----NEALLAEIQ----ALMPPTAEPAPEKMP-VDLNGIRPRDLVIGALSYAVVCVLAWQFTIAAGTYFAEHPAEESSFYVVNRLTGLARVVVVSMGALGAGVTGIASVGQAALAVQVAIGVMKGELDPTRE 241
BLAST of mRNA_Ecto-sp13_S_contig6685.17558.1 vs. uniprot
Match: A0A4D9CX59_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX59_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.470e-8 Identity = 63/172 (36.63%), Postives = 86/172 (50.00%), Query Frame = 1
Query: 142 SGARPLAASVPNGIGEGKRVGFASGLEEXXXXXXAADGEPKAKLQTVNARLLAQIEEQGKGIVI-PTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELD 654
SG RP+A PN G GK G S +AK TVN RL+ I+ + G+ EE+ + ++ DLNG+NP + A AA +SF W+ T LA A + + +D R+ A VG+ ALGAG+ GVTA+G+ +AA V GV GELD
Sbjct: 139 SGPRPVA---PNSAG-GKGFGPTS-------------TPTRAKTGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLD-TDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 292
BLAST of mRNA_Ecto-sp13_S_contig6685.17558.1 vs. uniprot
Match: A0A2V3IZV8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZV8_9FLOR) HSP 1 Score: 60.1 bits (144), Expect = 2.420e-6 Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 274 QTVNARLLAQIEEQGKGIVIPTEESKKIKRKEE--DLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGEL 651
QT N R+L Q+ + + + + R D++ VNPF ++GA GAA +S+ W A ++A + S P ++ I V R+++ ++ +V LFALG+GI GVT+LG+ ++ A G GE
Sbjct: 138 QTPNKRVLQQVRDTMQRLGVEEHPQTPSPRPFSPIDISSVNPFSPLVGAFGAAFISYAVWSALGYIAFFFASHPLDD-QIYVVQRLSAVVRTGLVCLFALGSGISGVTSLGLFLLFGRTAYGTLSGEF 264 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6685.17558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6685.17558.1 >prot_Ecto-sp13_S_contig6685.17558.1 ID=prot_Ecto-sp13_S_contig6685.17558.1|Name=mRNA_Ecto-sp13_S_contig6685.17558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp MGTLRALVGFLALIGANKVLSFVPGGQLNVARSSRRVDRLSWSITRCSGAback to top mRNA from alignment at Ecto-sp13_S_contig6685:3475..7613+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6685.17558.1 ID=mRNA_Ecto-sp13_S_contig6685.17558.1|Name=mRNA_Ecto-sp13_S_contig6685.17558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4139bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6685:3475..7613+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6685:3475..7613+ >mRNA_Ecto-sp13_S_contig6685.17558.1 ID=mRNA_Ecto-sp13_S_contig6685.17558.1|Name=mRNA_Ecto-sp13_S_contig6685.17558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6685:3475..7613+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |