mRNA_Ecto-sp13_S_contig6685.17557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6685.17557.1
Unique NamemRNA_Ecto-sp13_S_contig6685.17557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6685.17557.1 vs. uniprot
Match: A0A6H5KJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI1_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 2.400e-73
Identity = 124/150 (82.67%), Postives = 131/150 (87.33%), Query Frame = 1 
Query:    1 RQQRHHKGSGLSLGDLKSGDKGIDGSGGLGNGLGSLPSKEAMASKGLEAKVDMATYGHQSWALTNLGAWRSRSLGASGEGKPAEFVKSRQREAKRAMLGAAVAAAA---AGPGAAPTNSTVVEERADRPVPMVVPAKPPEEMGRSAMVIE 441
            ++QRHH+G GLS GDLK+GD  IDGS GLGN LGSLPSKEAMASKGLEAKVDMATYGHQSWALTNLGAWRS+SLGASG GKPA+FVKSRQREAKRAMLG A         GPGAAPTN+TVVEE ADRPV MVVPAKPPEEMGRSAMVIE
Sbjct:    5 KKQRHHRGCGLSPGDLKTGDDSIDGSVGLGNWLGSLPSKEAMASKGLEAKVDMATYGHQSWALTNLGAWRSQSLGASGGGKPADFVKSRQREAKRAMLGTAAXXXXXXXTGPGAAPTNATVVEEGADRPVLMVVPAKPPEEMGRSAMVIE 154
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BLAST of mRNA_Ecto-sp13_S_contig6685.17557.1 vs. uniprot
Match: D7FJR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJR6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.120e-19
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 RQQRHHKGSGLSLGDLKSGDKGIDGSGGLGNGLGSLPSKEAMASKGLEAK 150
            ++QRHHKGSGLS GDLKSGD  IDGSGGLGNGLGSLPSKEAMASKGLEAK
Sbjct:    5 KKQRHHKGSGLSPGDLKSGDNSIDGSGGLGNGLGSLPSKEAMASKGLEAK 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6685.17557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJI1_9PHAE2.400e-7382.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJR6_ECTSI2.120e-1990.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6685contigEcto-sp13_S_contig6685:1544..2418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_010470.1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463918.902524-CDS-Ecto-sp13_S_contig6685:1543..18371681463918.902524-CDS-Ecto-sp13_S_contig6685:1543..1837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6685 1544..1837 -
1681463918.912207-CDS-Ecto-sp13_S_contig6685:2268..24181681463918.912207-CDS-Ecto-sp13_S_contig6685:2268..2418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6685 2269..2418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6685.17557.1prot_Ecto-sp13_S_contig6685.17557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6685 1544..2418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6685.17557.1

>prot_Ecto-sp13_S_contig6685.17557.1 ID=prot_Ecto-sp13_S_contig6685.17557.1|Name=mRNA_Ecto-sp13_S_contig6685.17557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
RQQRHHKGSGLSLGDLKSGDKGIDGSGGLGNGLGSLPSKEAMASKGLEAK
VDMATYGHQSWALTNLGAWRSRSLGASGEGKPAEFVKSRQREAKRAMLGA
AVAAAAAGPGAAPTNSTVVEERADRPVPMVVPAKPPEEMGRSAMVIE*
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mRNA from alignment at Ecto-sp13_S_contig6685:1544..2418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6685.17557.1 ID=mRNA_Ecto-sp13_S_contig6685.17557.1|Name=mRNA_Ecto-sp13_S_contig6685.17557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6685:1544..2418- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACAACAGAGACATCATAAAGGCAGTGGCCTGAGCCTTGGAGATCTCAA
GAGCGGCGACAAAGGTATCGACGGAAGCGGGGGGCTCGGCAATGGGCTTG
GGTCACTCCCATCAAAGGAGGCCATGGCATCGAAGGGCCTCGAGGCGAAG
GTGAGACGCAATACACACAAACCCCCGCCAACGAATACGCTATTCTCCGG
AGCTCATGTCAATCTCACGTACGACTGTGAACGTGCGGGTACGGGATCAG
CACAAGCCCGACGTTCTACTGCCGTGTACCACACAAGATAACACACCCCC
TGGACCCATTTTCAAAGCTCGATTACTCCACGACCCAAGAGGATGTACAA
ACGAAACGACACGTTTTCGAAGAGATCTCGACCATAAAGCTTTCAACGCC
GCCGTTTCGGCACCCCTACTCTTTCTGCTGGTTGTAAATTGAGCTTGAAA
AACCGGGCCAGGGGGTGTGTTATCTTGTGTCGTATACAGTATTTCCAACT
GAGGAAAGATTCCGACAAGTGAGAGACATGCATTGTTCCGACCCCGTTCT
GCCATTCTCTTATCCCATTCGCAACACAAAGGTGGACATGGCTACGTACG
GCCACCAATCTTGGGCGCTTACGAACCTCGGTGCGTGGCGGAGTCGGTCG
TTAGGCGCATCAGGGGAGGGGAAACCCGCCGAGTTTGTCAAGAGCAGACA
GCGCGAGGCCAAGAGGGCGATGCTGGGAGCTGCTGTTGCTGCTGCTGCTG
CTGGCCCTGGCGCAGCACCAACAAATTCAACAGTTGTTGAGGAGAGGGCT
GATCGTCCTGTACCCATGGTCGTCCCTGCAAAGCCGCCAGAAGAGATGGG
ACGCAGCGCCATGGTTATCGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6685:1544..2418-

>mRNA_Ecto-sp13_S_contig6685.17557.1 ID=mRNA_Ecto-sp13_S_contig6685.17557.1|Name=mRNA_Ecto-sp13_S_contig6685.17557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6685:1544..2418- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACAACAGAGACATCATAAAGGCAGTGGCCTGAGCCTTGGAGATCTCAA
GAGCGGCGACAAAGGTATCGACGGAAGCGGGGGGCTCGGCAATGGGCTTG
GGTCACTCCCATCAAAGGAGGCCATGGCATCGAAGGGCCTCGAGGCGAAG
GTGGACATGGCTACGTACGGCCACCAATCTTGGGCGCTTACGAACCTCGG
TGCGTGGCGGAGTCGGTCGTTAGGCGCATCAGGGGAGGGGAAACCCGCCG
AGTTTGTCAAGAGCAGACAGCGCGAGGCCAAGAGGGCGATGCTGGGAGCT
GCTGTTGCTGCTGCTGCTGCTGGCCCTGGCGCAGCACCAACAAATTCAAC
AGTTGTTGAGGAGAGGGCTGATCGTCCTGTACCCATGGTCGTCCCTGCAA
AGCCGCCAGAAGAGATGGGACGCAGCGCCATGGTTATCGAGTGA
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