mRNA_Ecto-sp13_S_contig6665.17538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6665.17538.1
Unique NamemRNA_Ecto-sp13_S_contig6665.17538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6665.17538.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.360e-90
Identity = 210/296 (70.95%), Postives = 213/296 (71.96%), Query Frame = 1 
Query:  187 EGGGWVAGGPGDGRGGRFGGARGPGRRGNNHKN-NGGDLDLQDLSLPVVIEPSTVTVRGRGWDNRSPGRNGSGGNGNGYRGGEHHDRYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRIRARGPPSPRYTGDAPPPQHGGGGRQSTTHVVGRESWDQPRGGSGRGQWNGNGGWXXXXXXXXXXXXXXXXXXXPGD--VGVSSSHRISQRDDSRNNAAPRYGGDHTXXXXXXXXXXXLARHHYMNGGVNGXXXXXXXXXXXXRTERSRSRSPKDRYGGGGGFRDLSPPGRE 1065
            EGGGWVAGGP DGRGGRFGGARGPGRRGNN  N NGGDLD QDLSLPVVIEPSTVTVRGRGWDNRSPGRNGSGGNGNGYRGGEHHDRYS                  XXXXXXX        DR+R RGPPSPRY GDAPPPQ     RQSTTHVVGRESWDQPRGGSGRGQWNGNGGW  XXXXXXXXXXXXXXXXX     VGVS                        XXXXXXXXXXX    HY+NGGV+GXX          RTERSRSRSPKDRYGGGGGFRDLSPPGRE
Sbjct:   88 EGGGWVAGGPSDGRGGRFGGARGPGRRGNNKNNDNGGDLDFQDLSLPVVIEPSTVTVRGRGWDNRSPGRNGSGGNGNGYRGGEHHDRYSGGGPDGFDGSDRGGPRYGXXXXXXXGWGGGGFRDRVRLRGPPSPRYAGDAPPPQXXXXXRQSTTHVVGRESWDQPRGGSGRGQWNGNGGWSGXXXXXXXXXXXXXXXXXXXXXXVGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHYLNGGVSGXXIGGSPRGRPRRTERSRSRSPKDRYGGGGGFRDLSPPGRE 383
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6665.17538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2A1_9PHAE1.360e-9070.95Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6665contigEcto-sp13_S_contig6665:2587..3663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1079
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003620.1
Cds size1050
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.3460488-UTR-Ecto-sp13_S_contig6665:2586..26131681463917.3460488-UTR-Ecto-sp13_S_contig6665:2586..2613Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6665 2587..2613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463917.3560178-CDS-Ecto-sp13_S_contig6665:2613..36631681463917.3560178-CDS-Ecto-sp13_S_contig6665:2613..3663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6665 2614..3663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6665.17538.1prot_Ecto-sp13_S_contig6665.17538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6665 2614..3663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6665.17538.1

>prot_Ecto-sp13_S_contig6665.17538.1 ID=prot_Ecto-sp13_S_contig6665.17538.1|Name=mRNA_Ecto-sp13_S_contig6665.17538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
MTKNDGGGGGGSSPPSGRRRHLSPNGGGGDGTWRNNGAGGSNQESGGGAR
RRGEGGGWVAGGPGDGRGGRFGGARGPGRRGNNHKNNGGDLDLQDLSLPV
VIEPSTVTVRGRGWDNRSPGRNGSGGNGNGYRGGEHHDRYSGGGADGFDG
GDRGGPRYGNAADGGPSWGAGGFRDRIRARGPPSPRYTGDAPPPQHGGGG
RQSTTHVVGRESWDQPRGGSGRGQWNGNGGWSGGGGGGGGGGNINHHHHH
PGDVGVSSSHRISQRDDSRNNAAPRYGGDHTGGSGGGRGPAPLARHHYMN
GGVNGGGIGGSPRGRPRRTERSRSRSPKDRYGGGGGFRDLSPPGRERFGA
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mRNA from alignment at Ecto-sp13_S_contig6665:2587..3663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6665.17538.1 ID=mRNA_Ecto-sp13_S_contig6665.17538.1|Name=mRNA_Ecto-sp13_S_contig6665.17538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6665:2587..3663+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGCTCCCCTCCTCGAAGAATCCACATGACCAAGAACGACGGCGGTGG
CGGCGGAGGGTCTTCTCCTCCTTCTGGCCGTCGCCGGCATCTCTCGCCCA
ACGGGGGTGGCGGCGACGGCACGTGGAGGAACAACGGCGCAGGCGGCAGC
AACCAAGAGAGCGGGGGGGGGGCGCGGAGGAGGGGAGAGGGGGGAGGGTG
GGTCGCGGGGGGCCCCGGCGATGGAAGGGGGGGGAGGTTTGGGGGCGCAA
GAGGACCGGGTCGCCGAGGGAACAACCACAAAAACAACGGCGGTGACCTG
GACTTGCAGGACCTGTCTTTGCCCGTTGTGATTGAACCGAGTACCGTCAC
GGTCAGGGGCAGGGGGTGGGACAACAGAAGCCCTGGTCGAAACGGCAGTG
GCGGCAATGGCAACGGGTACCGGGGGGGGGAGCACCACGACCGGTACAGC
GGGGGGGGGGCTGACGGCTTCGACGGCGGCGATAGAGGCGGGCCGAGGTA
CGGGAACGCTGCAGACGGCGGGCCGAGCTGGGGGGCGGGCGGATTCAGGG
ATAGGATCAGGGCGCGGGGACCCCCTTCTCCCAGGTATACCGGTGACGCC
CCACCGCCACAGCACGGAGGAGGAGGGCGGCAGTCTACGACGCACGTTGT
GGGCCGCGAATCGTGGGACCAGCCTCGCGGCGGCAGCGGTCGGGGCCAAT
GGAACGGCAACGGCGGGTGGAGCGGCGGCGGAGGCGGCGGCGGCGGCGGC
GGCAATATCAACCACCACCACCACCACCCGGGAGACGTAGGCGTGTCTTC
CTCGCACAGGATTTCTCAGCGCGATGATTCCCGCAACAACGCCGCCCCGC
GCTATGGCGGCGACCACACTGGCGGCAGCGGCGGGGGCAGGGGCCCTGCC
CCCCTGGCTCGCCACCACTACATGAACGGCGGGGTGAACGGCGGCGGCAT
CGGCGGTTCGCCGAGAGGTAGACCGCGGCGCACGGAGCGCAGCCGCTCCC
GTAGCCCGAAGGACCGCTATGGCGGTGGCGGAGGTTTTCGTGACCTCAGC
CCCCCCGGTAGGGAACGGTTCGGCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6665:2587..3663+

>mRNA_Ecto-sp13_S_contig6665.17538.1 ID=mRNA_Ecto-sp13_S_contig6665.17538.1|Name=mRNA_Ecto-sp13_S_contig6665.17538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6665:2587..3663+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAAGAACGACGGCGGTGGCGGCGGAGGGTCTTCTCCTCCTTCTGG
CCGTCGCCGGCATCTCTCGCCCAACGGGGGTGGCGGCGACGGCACGTGGA
GGAACAACGGCGCAGGCGGCAGCAACCAAGAGAGCGGGGGGGGGGCGCGG
AGGAGGGGAGAGGGGGGAGGGTGGGTCGCGGGGGGCCCCGGCGATGGAAG
GGGGGGGAGGTTTGGGGGCGCAAGAGGACCGGGTCGCCGAGGGAACAACC
ACAAAAACAACGGCGGTGACCTGGACTTGCAGGACCTGTCTTTGCCCGTT
GTGATTGAACCGAGTACCGTCACGGTCAGGGGCAGGGGGTGGGACAACAG
AAGCCCTGGTCGAAACGGCAGTGGCGGCAATGGCAACGGGTACCGGGGGG
GGGAGCACCACGACCGGTACAGCGGGGGGGGGGCTGACGGCTTCGACGGC
GGCGATAGAGGCGGGCCGAGGTACGGGAACGCTGCAGACGGCGGGCCGAG
CTGGGGGGCGGGCGGATTCAGGGATAGGATCAGGGCGCGGGGACCCCCTT
CTCCCAGGTATACCGGTGACGCCCCACCGCCACAGCACGGAGGAGGAGGG
CGGCAGTCTACGACGCACGTTGTGGGCCGCGAATCGTGGGACCAGCCTCG
CGGCGGCAGCGGTCGGGGCCAATGGAACGGCAACGGCGGGTGGAGCGGCG
GCGGAGGCGGCGGCGGCGGCGGCGGCAATATCAACCACCACCACCACCAC
CCGGGAGACGTAGGCGTGTCTTCCTCGCACAGGATTTCTCAGCGCGATGA
TTCCCGCAACAACGCCGCCCCGCGCTATGGCGGCGACCACACTGGCGGCA
GCGGCGGGGGCAGGGGCCCTGCCCCCCTGGCTCGCCACCACTACATGAAC
GGCGGGGTGAACGGCGGCGGCATCGGCGGTTCGCCGAGAGGTAGACCGCG
GCGCACGGAGCGCAGCCGCTCCCGTAGCCCGAAGGACCGCTATGGCGGTG
GCGGAGGTTTTCGTGACCTCAGCCCCCCCGGTAGGGAACGGTTCGGCGCC
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