mRNA_Ecto-sp13_S_contig6650.17512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6650.17512.1
Unique NamemRNA_Ecto-sp13_S_contig6650.17512.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: D7G8D7_ECTSI (ARL1, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D7_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 4.550e-120
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA 587
            MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA
Sbjct:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA 184
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: A0A836CD21_9STRA (ARL1, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD21_9STRA)

HSP 1 Score: 333 bits (853), Expect = 4.610e-107
Identity = 162/184 (88.04%), Postives = 178/184 (96.74%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA 587
            MGI+LS+VFQA+FGSKEVRILILGLDNAGKTTIL RLQNEA+++IQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ER+ IAKQEL AMLEEEELKDAILLVFANKQDQPGSL +T+VSEALGLP++R+RQW+IQEASA+KGKGLFEGFDWLVTCIKGG A
Sbjct:    1 MGILLSKVFQAVFGSKEVRILILGLDNAGKTTILLRLQNEAEEDIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADTERLGIAKQELAAMLEEEELKDAILLVFANKQDQPGSLKATQVSEALGLPELRSRQWTIQEASAVKGKGLFEGFDWLVTCIKGGNA 184
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: A0A1E7FFD0_9STRA (Arl1-family small GTPase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFD0_9STRA)

HSP 1 Score: 320 bits (819), Expect = 5.370e-102
Identity = 153/181 (84.53%), Postives = 170/181 (93.92%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKG 578
            MGI+ S+VF+ LFGSKEVRILILGLDNAGKTTILYRLQNE+D+ +QTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ERM +AK EL AMLEE+ELKD+ILLVFANKQDQ G++ + ++S+ALGLPDIRNRQWSIQE SALKGKGLFEGFDWLVTCIKG
Sbjct:    1 MGILFSKVFETLFGSKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADAERMPVAKGELAAMLEEDELKDSILLVFANKQDQKGAMNAQQISDALGLPDIRNRQWSIQETSALKGKGLFEGFDWLVTCIKG 181
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: A0A7S2DEW5_9STRA (Hypothetical protein n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2DEW5_9STRA)

HSP 1 Score: 318 bits (814), Expect = 2.980e-101
Identity = 154/183 (84.15%), Postives = 169/183 (92.35%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGE 584
            MGI+ SRVFQ++FGSKEVRILILGLDNAGKTTILY+LQNE D+ I TIPTIGFNVETL+YKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+DRER+ +A+QEL AMLEEEELKD+ILLVFANKQDQ G+L +  VSEAL LPDIRNRQWSIQE  ALKGKGLFEGFDWLV CIKGG+
Sbjct:    1 MGIIFSRVFQSIFGSKEVRILILGLDNAGKTTILYKLQNETDEEINTIPTIGFNVETLKYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADRERLNVAQQELQAMLEEEELKDSILLVFANKQDQSGALGAQGVSEALRLPDIRNRQWSIQETCALKGKGLFEGFDWLVMCIKGGD 183
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: B8CE86_THAPS (Adp-ribosylation factor 1 n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8CE86_THAPS)

HSP 1 Score: 317 bits (812), Expect = 6.130e-101
Identity = 152/183 (83.06%), Postives = 173/183 (94.54%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGE 584
            MGI++SRVF++LFGSKEVRILILGLDNAGKTTILYRLQNE+D+ +QTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDS+D ERM++AK EL AMLEEEEL+++ILLVFANKQDQ G+L + ++S+ALGLP++RNRQWSIQE SAL+GKGLFEGFDWLV CIKG E
Sbjct:    1 MGIIMSRVFESLFGSKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSADVERMSVAKGELAAMLEEEELQNSILLVFANKQDQKGALNAQQISDALGLPEVRNRQWSIQETSALQGKGLFEGFDWLVACIKGVE 183
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: F0YGB1_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGB1_AURAN)

HSP 1 Score: 316 bits (809), Expect = 1.600e-100
Identity = 156/182 (85.71%), Postives = 168/182 (92.31%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDN-IQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKG 578
            MGI+ SRVFQALFGSKEVRILILGLDNAGKTTILY+LQNE DD  I TIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D+ER+A+A+QEL AMLEEEELKDAILLV ANKQDQ G+L + +VSEALGLPD+RNRQWSIQE  A KGKGL EGFDWLVTCIKG
Sbjct:    1 MGILFSRVFQALFGSKEVRILILGLDNAGKTTILYKLQNETDDEEIMTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADKERLAVARQELQAMLEEEELKDAILLVLANKQDQRGALGAKDVSEALGLPDVRNRQWSIQETCATKGKGLSEGFDWLVTCIKG 182
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: A0A6U1B3M7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B3M7_9STRA)

HSP 1 Score: 315 bits (806), Expect = 1.360e-99
Identity = 152/184 (82.61%), Postives = 169/184 (91.85%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA 587
            MGI  SR+FQ +FGSKEVRILILGLDNAGKTTILYRLQNE+D++IQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D+ER+ +A+QEL AMLEEEELKDAILL+FANKQDQ G+L + ++SEAL L +IRNRQWSIQE  ALKG GLFEGFDWLV CI GGEA
Sbjct:   32 MGIFFSRIFQRIFGSKEVRILILGLDNAGKTTILYRLQNESDEDIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADKERLNVAQQELQAMLEEEELKDAILLLFANKQDQKGALGAQDISEALKLTEIRNRQWSIQETCALKGNGLFEGFDWLVMCISGGEA 215
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: A0A7S3DQ25_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQ25_9STRA)

HSP 1 Score: 314 bits (805), Expect = 4.240e-99
Identity = 150/183 (81.97%), Postives = 172/183 (93.99%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGE 584
            MGI++SR+F++LFGSKEVRILILGLDNAGKTTILYRLQNE D+ +QTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ERM++A+ EL AMLEEE+LKD+ILLVFANKQDQ G+L + ++S+ALGLP++RNRQWSIQE SALKGKG+FEGFDWLVT IKG E
Sbjct:   54 MGILMSRLFESLFGSKEVRILILGLDNAGKTTILYRLQNEGDEVVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADIERMSVARGELTAMLEEEDLKDSILLVFANKQDQKGALNAEQISDALGLPEVRNRQWSIQETSALKGKGMFEGFDWLVTSIKGEE 236
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: A0A6S9DTD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DTD2_HETAK)

HSP 1 Score: 308 bits (789), Expect = 1.500e-97
Identity = 147/181 (81.22%), Postives = 168/181 (92.82%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKG 578
            MGI  S++F +LFGSKEVRILILGLDNAGKTTILYRLQN++D+ IQT+PTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ER+ +A+QEL AMLEEE+L+DAILLVFANKQDQ G+L + ++SE+LGL +IRNRQWSIQE SALKG GL+EGFDWLVTCIKG
Sbjct:    1 MGIFFSQLFNSLFGSKEVRILILGLDNAGKTTILYRLQNDSDEVIQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADAERVHVARQELSAMLEEEDLRDAILLVFANKQDQRGALNAAQISESLGLSEIRNRQWSIQETSALKGNGLYEGFDWLVTCIKG 181
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BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Match: A0A7S3PDY2_9STRA (Hypothetical protein n=3 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A7S3PDY2_9STRA)

HSP 1 Score: 298 bits (762), Expect = 1.530e-93
Identity = 150/185 (81.08%), Postives = 165/185 (89.19%), Query Frame = 3 
Query:   36 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNI-QTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDIRNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA 587
            MGI  SR+F ALFGSKEVRILILGLDNAGKTTILYRLQ   D+ I QT+PTIGFNVETLQY+NIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ER+ IAKQELMAMLEEEELKD+ILLVFANKQD  G+L + +VSE LGL  I+NRQWSIQE SA KG+GLFEGFDWLVTCIK G++
Sbjct:    1 MGIFFSRLFSALFGSKEVRILILGLDNAGKTTILYRLQ--VDEPIGQTVPTIGFNVETLQYQNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADVERLNIAKQELMAMLEEEELKDSILLVFANKQDMKGALNAAQVSEHLGLATIKNRQWSIQETSATKGRGLFEGFDWLVTCIKSGQS 183
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6650.17512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D7_ECTSI4.550e-120100.00ARL1, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
A0A836CD21_9STRA4.610e-10788.04ARL1, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
A0A1E7FFD0_9STRA5.370e-10284.53Arl1-family small GTPase n=1 Tax=Fragilariopsis cy... [more]
A0A7S2DEW5_9STRA2.980e-10184.15Hypothetical protein n=2 Tax=Dictyochophyceae TaxI... [more]
B8CE86_THAPS6.130e-10183.06Adp-ribosylation factor 1 n=15 Tax=Bacillariophyta... [more]
F0YGB1_AURAN1.600e-10085.71Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A6U1B3M7_9STRA1.360e-9982.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3DQ25_9STRA4.240e-9981.97Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A6S9DTD2_HETAK1.500e-9781.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3PDY2_9STRA1.530e-9381.08Hypothetical protein n=3 Tax=Labyrinthulomycetes T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6650contigEcto-sp13_S_contig6650:79..4644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score368.6
Seed ortholog evalue1.7e-99
Seed eggNOG ortholog2880.D7G8D7
Preferred nameARL1
Model size2210
KEGG koko:K07942,ko:K07977
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000139,GO:0000166,GO:0001505,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006836,GO:0006886,GO:0006892,GO:0006893,GO:0006897,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007033,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007431,GO:0007444,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009888,GO:0009987,GO:0010256,GO:0010517,GO:0010518,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019748,GO:0019904,GO:0022607,GO:0023052,GO:0023061,GO:0030234,GO:0030334,GO:0031090,GO:0031503,GO:0031584,GO:0031984,GO:0032258,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033157,GO:0033227,GO:0033363,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034613,GO:0034629,GO:0034976,GO:0035220,GO:0035272,GO:0035295,GO:0035639,GO:0036094,GO:0036465,GO:0040012,GO:0042147,GO:0042886,GO:0043001,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048488,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051270,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060191,GO:0060193,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0061024,GO:0061919,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070861,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0072659,GO:0072665,GO:0072666,GO:0090087,GO:0090150,GO:0090158,GO:0097159,GO:0097367,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098876,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:1901265,GO:1901363,GO:1903292,GO:1903827,GO:1905037,GO:1990778,GO:2000145
Exons5
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0072@2759
Ec32 ortholog descriptionARL1, ARF-like Ras superfamily GTPase
Ec32 orthologEc-19_004070.1
Cds size555
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6650.17512.1prot_Ecto-sp13_S_contig6650.17512.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6650 114..3024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463915.2983549-UTR-Ecto-sp13_S_contig6650:78..1131681463915.2983549-UTR-Ecto-sp13_S_contig6650:78..113Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6650 79..113 +
1681463915.361863-UTR-Ecto-sp13_S_contig6650:3024..46441681463915.361863-UTR-Ecto-sp13_S_contig6650:3024..4644Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6650 3025..4644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463915.3105223-CDS-Ecto-sp13_S_contig6650:113..3111681463915.3105223-CDS-Ecto-sp13_S_contig6650:113..311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6650 114..311 +
1681463915.3205602-CDS-Ecto-sp13_S_contig6650:918..10621681463915.3205602-CDS-Ecto-sp13_S_contig6650:918..1062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6650 919..1062 +
1681463915.331403-CDS-Ecto-sp13_S_contig6650:1919..19971681463915.331403-CDS-Ecto-sp13_S_contig6650:1919..1997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6650 1920..1997 +
1681463915.342283-CDS-Ecto-sp13_S_contig6650:2295..23961681463915.342283-CDS-Ecto-sp13_S_contig6650:2295..2396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6650 2296..2396 +
1681463915.350564-CDS-Ecto-sp13_S_contig6650:2990..30241681463915.350564-CDS-Ecto-sp13_S_contig6650:2990..3024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6650 2991..3024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6650.17512.1

>prot_Ecto-sp13_S_contig6650.17512.1 ID=prot_Ecto-sp13_S_contig6650.17512.1|Name=mRNA_Ecto-sp13_S_contig6650.17512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPT
IGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRE
RMAIAKQELMAMLEEEELKDAILLVFANKQDQPGSLTSTEVSEALGLPDI
RNRQWSIQEASALKGKGLFEGFDWLVTCIKGGEA*
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mRNA from alignment at Ecto-sp13_S_contig6650:79..4644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6650.17512.1 ID=mRNA_Ecto-sp13_S_contig6650.17512.1|Name=mRNA_Ecto-sp13_S_contig6650.17512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4566bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6650:79..4644+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAGAGACCAAGGCAAGCTAATCGCAAAGACACCATGGGCATCGTCCTG
AGCCGAGTCTTCCAGGCCCTCTTCGGGTCGAAGGAAGTCCGCATCCTCAT
CCTCGGTCTGGACAACGCGGGAAAGACGACGATCCTGTACCGCCTGCAGA
ACGAGGCCGACGACAATATCCAGACCATCCCTACGATCGGTTTCAACGTC
GAGACCCTACAGTACAAGAATATTAAGTTTCAGGTGTGTGTGTGTTTGGG
AGGTTTGCCAGGCCTTGCAGAGGCCCCTGCTGCTGGTTTTGCTGCTGCCT
CTCCGCTTCATGGCGGGCAACGTCCTGCTCCCTGTTGGACTCTTTCTTCG
TCTTCCTCCCGTTTCGTGTCGTATCATGTCTTTCTGTCTCTCTCGCTTCC
ACGGCACACGTTTGTTTTTGGGTGTTTCGAATAGTTGCGTGTGACGGGGT
CAAGCTGGTGAGTGTCGTTGCCCCTCTTCACACCGACACCGAGTATCACA
GGAGGGCAAGCATGTTGTTGACCTAGGATTATCACGTCTTGTGTGTGCCC
CCAAGCCGATGCCTTTCTCTTCCGAGTCTGGCGTTAACAGAAGGACCCGA
CCTAACGCAACTGCTGTTGCAAGGCTACAACAACCACCACAATGCACAGC
GATCAACGACTTCGCTTTTCTTCCACGCGGCACGTGTGCGCCACCAGCTT
GTCGAGGACGTTGTGTTATCTGGTTGGTACACAGGCACCCACCAGCCGTG
TCCCCCGTGTCGGCACGACAACCCACCCCGAAACCGTTTTGCCCGGGCTC
CTCGTACCCACCCCTGTGTTCTGCACGAACCACGGCGTAGGTGTGGGATC
TGGGCGGACAAACAAGTATTCGGCCCTACTGGAGATGCTACTACCCAAAC
ACGGACGCGATCGTGTTCGTTGTGGACAGCTCGGACCGAGAGCGGATGGC
CATCGCGAAGCAGGAGCTCATGGCCATGCTAGAGGTGAGAAATATTATCA
ATTTGTGAAAAGATTTTGTTGGGTACGTGCTCTTCTAATTACATGTGAGT
GTGTGTGCCTTACGAGCACGTATTTGGATGTTTTGCCCACCCTTACTCAG
AAGCCGCACCGACTCCGAAATCAAATTGCCGTCACGGCCTGACGTTGCCA
TCCGGCCAAGTCCAATAACCTCAGCAAGAGCGTTATTATCAAGTAATTGG
CGCCGCTATCCCGTCCCACTTGTGTGAATGTGTTGCTTTGGACCAAATAT
TGGTCTCAAGAGTATTCTGTTGCGTCTTTAGGGCCTGGCCGAGAGAGGGG
AGGTGACGGTGGGAAGCCGTTGTGGAACACCACCGGACTTCCTTCCATTT
TTGGGAGAGGAACGGTTTCGGACCTTGACGCGTGCGTGCGATATCTCGAG
GGATGATGCCCTCATGCTATCTCCTTGACGCTGGTGAATGATCTCGGAGC
AGCGGGGCACGGAGGCGGGAAATCGATCTTGATCTATCTCAGTTGTGCGT
GCTCAACTCTGCAGGCCGCTTCACCGTATTCGAGTTAACCCCTGCTTGAA
GCGCTCCATGAGTACGGGGTGGGGGAGGCATCGGATGGTACAACATCATG
GTCCGCGGTGGTACCCCTGGATCATCTCCTCCAAGACCCCGACTTTTGCC
TTGTTAGTGTCCGAATCCCGTTGTGACGCGTTATAGTGGGCCCGTCTTCT
TGTTTCGAACATGTTTGTATGCCATGGAAGCCTTGTCCCCGGTTCCCCCT
CCCCCGTTAAGGTCTCGGTGCTTCTCCACGACCATTAACCGGGGGCTGCC
CATCCCCTGCCCGGTGTCGGTGCTTCCTCAATCTTTGGCAGGAGGAGGAG
TTGAAGGACGCAATATTGTTGGTGTTTGCCAACAAGCAGGACCAGCCGGG
ATCCCTCACCTCGACGGAGGTACAGCTGTGTGCAGCCAGTAATGAAGAAC
GAGAGAATTAACGCTTTTTGAGGGGAAACCTTCGGCTCTCGATTGTCTTG
ATCAACTGGTCTTAGCCTACTCCTTTTAGCCGAGGACGTGTTCTTACAAG
ACCATTATCTTCAAAGTTGATCTTGTACTTTGTTTTATTTTCTGAGCATC
AAGATCTTGACCTCTGCGTTCTGATCGGTGGCGCGAATAACAGCTCTTTG
ACCACATCGCGTCAATCTCGTAACGTGTACCCCTTGATCCGCATGACACC
GCTCTGGCGTGGATCAGGTGTCGGAAGCACTGGGGCTACCAGACATTCGC
AACCGGCAATGGTCGATCCAAGAGGCGTCGGCACTTAAGGGGAAGGGACT
GTTCGAGGGCTTTGACTGGTGAGCTTTTTTCAGTGGATGCGGTCGAGCCT
GTTTCTCTCATTTTGTTTATATAGTTATGTTTTGTTATTGTCGTGGTGCT
GGTGTAGTGGTGTCGTGGCCGGCCCTGCAAGGGAATGGGGTGCTGCCGTT
TTGGCTGTCGCGTATGTACGGTTGCTGTTGTTGTTGTGGTTGTTCTGTTG
GAGGTTTTCGGCGCGTTTGTGAGTGTTGGTGGTGCTCGTGCTGGTGGCGG
TGATGCCGCGGTGTTGTCTCGTGGCAACCCCCCGGCTCTGCGTCATGCCT
TCAGTAACACGTGCAAGACCGGTTCCTCGGATACGCCTGTTGCCTCCCAA
GTTAATATGGCAGTTGACAGAGGTTGACAGGCTTGTCAAGGACGTCTTTT
TGGGAAATATGCTAGGTTTTGTCTGGGCGGTCGTCTCTGACACGTCTGTC
AAGCGAGAAAATTCCTGACAACTACCACATCTTAAACATGTTAAGAACGA
GTAAAGCCCACGGAGCGCTCCTGTCCTTTGCCTTGTTTGACACTCGCGTT
CGCCCTCTCCAACCAGACCCACACCCGACCCTCCCTCTTGCTTGTTCTTT
TTTTCCGCGAAGGTTGGTAACTTGCATCAAGGGCGGAGAAGCCTGATTGG
CCGCTACAGGCATCGTTGGTAGTACTGGGCTTTCTGTGGGCCGATTTAAA
AGCGGAGGGGGCGCGGGGGCGAGACTGCGACGGCAAGGAGAAGGGCATCG
TTCTTGGCAGAAGAATCTGACGCGTTTCCCTTAGTGCGGGGACGAGGGAG
TGGGGGGAGCTCATCCGTTCTCGAGCGAGATGGAAGTTTGTTCGGGTGGT
CTTGTGAAAGGCGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTATTGCCGCCATTGGGGTAGCTTGTAGTGATGGAGCTGCTACTGGTAT
TGTTGGGGCAGCTTCTAATGGTGAAGAGCTCCTGCCGCTGCTCTTGTTGG
GGTGACTCTGCTGCTGCATGGTGATGCCGCGACCGCTGCCCATGTTGATT
GGTTACTCAACCTGTGCTTCATAGAGAGAGAAGGAATCGAACAGGCTGGC
GCTGACCTCTTGCGGAGACAAGGGGCGGCGGAACACTAGGATCAACGAAT
ATTCGCGCATGGCATCTGTGCGACGACGGCTGCTGAAGCGCTCCTCTTTT
GTACTGGTATTATATTGGGAGAGCTGCAACTGCGATTTATTTGTTGTTGT
CGTTGGAACTCTCCTCCTTTCAGACCTGAGTCTCTGGCAGCTTTCTAGCG
GGCATCCCCTGAGAGACTCGGTTTTTGGTTCGGAATCGTTGTGGCGCTTT
TTCATACCAAATGTACCATAGTGTTGGGGCTCACTTTAGAACAGGAAGAC
GTGTGGTTGTTACGGGTTGCGTGGATCCGGGGAGCGCGTCGGGGTGTGCG
CGCGGTTGCTAAGGTTGGCGCTGTCGGCGTCTGGATGTGTTCACCTCCGA
TGCCCACCTTAAGGGAGGAGGCGCGTAACGGCGCGTAGGTACTGTAGCGC
ATCCGACGAAGATCGTGCTTTGAATTTTGCTCGAAAAAGGTCGGTCATAC
ACGCTGTACACGCTGTTGTTGTATGGTGTGCGGGTCATGTGCCTGCCTAC
CTTTTTTTTTAACTTGTGTTCTGCCCGTTTCAGGCTGCTCCTCTTCCACC
AGTCGTGGCGGCTTGTGGACCAAAGATAGGTGCCACGAAGTTGATCAGTC
TAGCGGGTTTTGCTGAAGAAAATGTGCACTTGTCGGGCGTGCCTGCTACG
GTTTGGTGGGGGGGGGGTGTACTACGAATGCGGCCGGAACGGCTGTGCCT
GGTCTGTTGTATGCGGACGTCGACTGTGGGTGTCCCGACGGCGTTTTTCC
GAAAACAAAGCGTTCTTTATTTGGTCAGCGGTACGTTCATTTGGTGTTAA
AAGCCGACACCCCCCGCCGCTCGCTGTTCTTCACGACGGCGGGTCGCGCG
TGGGTGCTGATGGCACGAAGATTGAACCAAAACAATGTGAATGTGCATCA
TTGTCCTCTTTTTGAGGCCCAGAGCCCGACCAACATCTAACTTGGAGTTG
TCGACCTATGCTCAGTCTACGCAGAAAGACGGCAGGCAAGACGAATGTGG
CTGTCTTCGTGTGCAAAATTAGGAGTTCTACTAGGAGTGCGTATTCCTTA
CTGCCGACATGTAGTTTAATTTTTTGAGCGCCTACCCAGTAGAGCCGGCC
TGCTCATAGGGTTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6650:79..4644+

>mRNA_Ecto-sp13_S_contig6650.17512.1 ID=mRNA_Ecto-sp13_S_contig6650.17512.1|Name=mRNA_Ecto-sp13_S_contig6650.17512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6650:79..4644+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATCGTCCTGAGCCGAGTCTTCCAGGCCCTCTTCGGGTCGAAGGA
AGTCCGCATCCTCATCCTCGGTCTGGACAACGCGGGAAAGACGACGATCC
TGTACCGCCTGCAGAACGAGGCCGACGACAATATCCAGACCATCCCTACG
ATCGGTTTCAACGTCGAGACCCTACAGTACAAGAATATTAAGTTTCAGGT
GTGGGATCTGGGCGGACAAACAAGTATTCGGCCCTACTGGAGATGCTACT
ACCCAAACACGGACGCGATCGTGTTCGTTGTGGACAGCTCGGACCGAGAG
CGGATGGCCATCGCGAAGCAGGAGCTCATGGCCATGCTAGAGGAGGAGGA
GTTGAAGGACGCAATATTGTTGGTGTTTGCCAACAAGCAGGACCAGCCGG
GATCCCTCACCTCGACGGAGGTGTCGGAAGCACTGGGGCTACCAGACATT
CGCAACCGGCAATGGTCGATCCAAGAGGCGTCGGCACTTAAGGGGAAGGG
ACTGTTCGAGGGCTTTGACTGGTTGGTAACTTGCATCAAGGGCGGAGAAG
CCTGA
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