mRNA_Ecto-sp13_S_contig6647.17507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6647.17507.1
Unique NamemRNA_Ecto-sp13_S_contig6647.17507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6647.17507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6647contigEcto-sp13_S_contig6647:6205..7762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1190
Hectar predicted targeting categoryother localisation
Exons2
Cds size900
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463914.626783-UTR-Ecto-sp13_S_contig6647:6204..64451681463914.626783-UTR-Ecto-sp13_S_contig6647:6204..6445Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6647 6205..6445 +
1681463914.6899345-UTR-Ecto-sp13_S_contig6647:6813..68621681463914.6899345-UTR-Ecto-sp13_S_contig6647:6813..6862Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6647 6814..6862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463914.7036936-CDS-Ecto-sp13_S_contig6647:6862..77621681463914.7036936-CDS-Ecto-sp13_S_contig6647:6862..7762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6647 6863..7762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6647.17507.1prot_Ecto-sp13_S_contig6647.17507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6647 6863..7762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6647.17507.1

>prot_Ecto-sp13_S_contig6647.17507.1 ID=prot_Ecto-sp13_S_contig6647.17507.1|Name=mRNA_Ecto-sp13_S_contig6647.17507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
MYTSHFSAEPARGESTSEVSSMLPLSNAAAAAASSTATSGVPELDWARQQ
LQQQQQQQQHHQSSWPAPSNLAGWGADGLVPSNGPAAPAVATGSSSSSSA
SPSRLPAAGHSSNACERALSPQVEMAAHQPTPPARAPSPFSPIVGALPFA
PDQGTATEGGGGGAFADEASLNRSGAAAVTATFSSAQQQDEGGASTPPPR
ESKSPSVSPGPAISPGGSSSAPRSTPKKKPRLVKKKKPKVGTAADGPVRR
RRVVKVKKARPPEVGLGERGRERSMGILRLLAGSPLSEEFRKPVVQLHPE
back to top

mRNA from alignment at Ecto-sp13_S_contig6647:6205..7762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6647.17507.1 ID=mRNA_Ecto-sp13_S_contig6647.17507.1|Name=mRNA_Ecto-sp13_S_contig6647.17507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6647:6205..7762+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTAGAGCACAGGCGAGGGAAGATGCGTAGCGCTCACCTCCTCTAGGG
TTAGGCCGATGAACCAATTTTCTTTTGAGAGGTAAAAAAAAACCGACCGT
CCTGTGACAAGATGTGCTTTTGGACGGGTACACGCCACATAGCACCTGGC
CAGTTCCCGCGAAAGGCCAGATCTCGGAAAAGCGTGGACCGTGGTGACAG
CACCGCCTAGCCGTGGACAGAGGCAAGAGAGTAGAGCGGAGGTGGGTGTG
CGCCTGTCGCTGGTGATTGTCGCTTCGTTGCTTTGTTTTCGTGCGTTGGC
GCGGAGAGAGGCGTGGTGTGCGTGTGTTGGTCGTCTACCTGGGTTATTTG
ATTTCTCGGGGTTGGCTCGTTGGCTCTTCGTATGCGCTTCCGCCTTTTTG
GGTTTGCCTCTTTGGGAGACGGGAGAGATCGCCCCTCGTCCTCGCGTATT
GTTTGTTGTGTCCCGCCGGGTGCAAGGCACGCGCGGCAGTGAGGAATAGC
GATCTATCTTTGCGCCTCTTCTCGTGTAGATACAAAGCGCTGTCGCGGCG
TGGTGATGTCTCCACACCTTCTGCCCGGTGGCTGTTTTTTCTTCGCTCTC
GTTCTGCAGGGAGATCGAGAAAAGAGTCTGACGTGCGGCAGCAGCAGCAG
CTCCGACGATGTACACCTCACACTTTTCCGCGGAGCCCGCACGCGGCGAG
TCAACCTCCGAGGTCTCGTCGATGCTCCCGCTTTCAAACGCTGCTGCTGC
CGCTGCGTCTAGTACTGCTACTAGCGGAGTGCCCGAGTTGGACTGGGCAC
GCCAACAGCTGCAGCAGCAGCAGCAACAACAACAACACCATCAATCCAGT
TGGCCGGCTCCTTCGAACCTTGCCGGCTGGGGTGCCGACGGCCTGGTCCC
GAGTAACGGGCCGGCGGCGCCTGCTGTCGCGACAGGCAGCAGCAGCAGCA
GCAGCGCGAGCCCATCCCGCCTCCCCGCTGCCGGACACTCCAGTAACGCT
TGCGAGCGGGCTCTGTCTCCCCAGGTTGAAATGGCCGCTCATCAACCTAC
GCCACCGGCACGAGCTCCATCACCCTTTTCTCCCATCGTGGGCGCGCTGC
CCTTTGCCCCTGACCAGGGAACAGCAACAGAGGGAGGAGGAGGAGGAGCA
TTTGCGGACGAAGCTAGTTTGAATCGTAGTGGCGCTGCTGCTGTTACTGC
AACGTTCAGCAGCGCGCAGCAGCAGGACGAGGGTGGTGCCTCCACTCCCC
CGCCGCGCGAATCAAAATCTCCGAGCGTGTCGCCTGGGCCCGCGATCTCG
CCCGGAGGGAGCAGCAGCGCACCTCGCTCTACTCCCAAAAAGAAACCGAG
ATTGGTAAAGAAGAAGAAACCAAAGGTGGGCACGGCGGCGGATGGGCCGG
TGAGAAGGAGGAGGGTGGTCAAGGTCAAGAAGGCCCGGCCTCCTGAGGTG
GGGCTGGGAGAGAGGGGGCGAGAGCGGTCGATGGGTATTTTGCGTCTTCT
GGCTGGCAGCCCGCTTTCAGAGGAGTTTCGGAAGCCAGTAGTGCAGCTGC
ATCCCGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6647:6205..7762+

>mRNA_Ecto-sp13_S_contig6647.17507.1 ID=mRNA_Ecto-sp13_S_contig6647.17507.1|Name=mRNA_Ecto-sp13_S_contig6647.17507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6647:6205..7762+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACACCTCACACTTTTCCGCGGAGCCCGCACGCGGCGAGTCAACCTC
CGAGGTCTCGTCGATGCTCCCGCTTTCAAACGCTGCTGCTGCCGCTGCGT
CTAGTACTGCTACTAGCGGAGTGCCCGAGTTGGACTGGGCACGCCAACAG
CTGCAGCAGCAGCAGCAACAACAACAACACCATCAATCCAGTTGGCCGGC
TCCTTCGAACCTTGCCGGCTGGGGTGCCGACGGCCTGGTCCCGAGTAACG
GGCCGGCGGCGCCTGCTGTCGCGACAGGCAGCAGCAGCAGCAGCAGCGCG
AGCCCATCCCGCCTCCCCGCTGCCGGACACTCCAGTAACGCTTGCGAGCG
GGCTCTGTCTCCCCAGGTTGAAATGGCCGCTCATCAACCTACGCCACCGG
CACGAGCTCCATCACCCTTTTCTCCCATCGTGGGCGCGCTGCCCTTTGCC
CCTGACCAGGGAACAGCAACAGAGGGAGGAGGAGGAGGAGCATTTGCGGA
CGAAGCTAGTTTGAATCGTAGTGGCGCTGCTGCTGTTACTGCAACGTTCA
GCAGCGCGCAGCAGCAGGACGAGGGTGGTGCCTCCACTCCCCCGCCGCGC
GAATCAAAATCTCCGAGCGTGTCGCCTGGGCCCGCGATCTCGCCCGGAGG
GAGCAGCAGCGCACCTCGCTCTACTCCCAAAAAGAAACCGAGATTGGTAA
AGAAGAAGAAACCAAAGGTGGGCACGGCGGCGGATGGGCCGGTGAGAAGG
AGGAGGGTGGTCAAGGTCAAGAAGGCCCGGCCTCCTGAGGTGGGGCTGGG
AGAGAGGGGGCGAGAGCGGTCGATGGGTATTTTGCGTCTTCTGGCTGGCA
GCCCGCTTTCAGAGGAGTTTCGGAAGCCAGTAGTGCAGCTGCATCCCGAG
back to top