mRNA_Ecto-sp13_S_contig66442.17504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig66442.17504.1
Unique NamemRNA_Ecto-sp13_S_contig66442.17504.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: D7FSI9_ECTSI (Villin villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.160e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQV 108
            EGSEPEAFWDALGGMGEYPK SEAEEVSQEPRLFQV
Sbjct:  517 EGSEPEAFWDALGGMGEYPKLSEAEEVSQEPRLFQV 552
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A6H5JVG7_9PHAE (HP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.160e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQV 108
            EGSEPEAFWDALGGMGEYPK SEAEEVSQEPRLFQV
Sbjct:  264 EGSEPEAFWDALGGMGEYPKLSEAEEVSQEPRLFQV 299
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A7S2D1R4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D1R4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQ 105
            EG EP+AFW+ALGG GEYPK +  E V  +PRLFQ
Sbjct:  293 EGEEPDAFWEALGGKGEYPKQAPGEPVPSDPRLFQ 327
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A835YLA3_9STRA (Villin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.370e-7
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQV 108
            EG EP AFW+ALGG GEY +++EAE   Q PRLFQ+
Sbjct:  543 EGDEPAAFWEALGGQGEYAEAAEAEPSPQPPRLFQI 578
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A0M0JNF3_9EUKA (Villin-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JNF3_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 7.720e-6
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLF 102
            EG EP +FW ALGG GEYPK+S  ++ S+EP LF
Sbjct:  582 EGEEPSSFWAALGGEGEYPKTSVLDDASREPMLF 615
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A3S4NLG6_9MAGN (Villin-1 isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S4NLG6_9MAGN)

HSP 1 Score: 49.7 bits (117), Expect = 7.720e-6
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLF 102
            EGSEP+ FWDA+GG  EYP+  E +E  ++P LF
Sbjct:  590 EGSEPDLFWDAIGGKAEYPREKEIKEYDEDPHLF 623
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A0L0D9G1_THETB (Villin-1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9G1_THETB)

HSP 1 Score: 49.3 bits (116), Expect = 1.060e-5
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLF 102
            EG+EP+AFWDALGG GEY   +   EV  EPRLF
Sbjct:  598 EGAEPQAFWDALGGKGEYASYAHLVEVPVEPRLF 631
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A251UY04_HELAN (Putative villin-like 1 n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UY04_HELAN)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLF 102
            EGSEP+ FWDALGG  EYPK  E +   ++P LF
Sbjct:  587 EGSEPDVFWDALGGKTEYPKEKEIKRFVEDPHLF 620
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A5N6NKR9_9ASTR (HP domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NKR9_9ASTR)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 20/34 (58.82%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLF 102
            EGSEP+ FWDALGG  EYPK  E +   ++P LF
Sbjct:  586 EGSEPDVFWDALGGKTEYPKEKEIKRFIEDPHLF 619
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BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Match: A0A7N2KQ64_QUELO (HP domain-containing protein n=8 Tax=Fagaceae TaxID=3503 RepID=A0A7N2KQ64_QUELO)

HSP 1 Score: 48.1 bits (113), Expect = 2.700e-5
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLF 102
            EGSEP+ FW+ALGG  EYPK+ E ++  ++P LF
Sbjct:  589 EGSEPDIFWNALGGKAEYPKAKEMKQCVEDPHLF 622
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig66442.17504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FSI9_ECTSI1.160e-1497.22Villin villin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JVG7_9PHAE1.160e-1497.22HP domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2D1R4_9STRA1.320e-765.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YLA3_9STRA3.370e-763.89Villin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A0M0JNF3_9EUKA7.720e-661.76Villin-like protein n=1 Tax=Chrysochromulina tobin... [more]
A0A3S4NLG6_9MAGN7.720e-655.88Villin-1 isoform X1 n=1 Tax=Cinnamomum micranthum ... [more]
A0A0L0D9G1_THETB1.060e-564.71Villin-1 n=1 Tax=Thecamonas trahens ATCC 50062 Tax... [more]
A0A251UY04_HELAN1.980e-558.82Putative villin-like 1 n=2 Tax=Helianthus annuus T... [more]
A0A5N6NKR9_9ASTR1.980e-558.82HP domain-containing protein n=1 Tax=Mikania micra... [more]
A0A7N2KQ64_QUELO2.700e-555.88HP domain-containing protein n=8 Tax=Fagaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig66442contigEcto-sp13_S_contig66442:148..258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score75.1
Seed ortholog evalue7.7e-12
Seed eggNOG ortholog2880.D7FSI9
Model size111
KEGG koko:K05761
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.actin filament capping
EggNOG OGsKOG0443@1,KOG0443@2759
Cds size111
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463914.2525742-CDS-Ecto-sp13_S_contig66442:147..2581681463914.2525742-CDS-Ecto-sp13_S_contig66442:147..258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig66442 148..258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig66442.17504.1prot_Ecto-sp13_S_contig66442.17504.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig66442 148..258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig66442.17504.1

>prot_Ecto-sp13_S_contig66442.17504.1 ID=prot_Ecto-sp13_S_contig66442.17504.1|Name=mRNA_Ecto-sp13_S_contig66442.17504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
EGSEPEAFWDALGGMGEYPKSSEAEEVSQEPRLFQV*
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mRNA from alignment at Ecto-sp13_S_contig66442:148..258-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig66442.17504.1 ID=mRNA_Ecto-sp13_S_contig66442.17504.1|Name=mRNA_Ecto-sp13_S_contig66442.17504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66442:148..258- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGATCGGAGCCGGAAGCGTTCTGGGACGCCCTTGGAGGCATGGGCGA
GTACCCCAAGTCGTCAGAGGCTGAGGAAGTCTCACAGGAACCACGTCTGT
TCCAGGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig66442:148..258-

>mRNA_Ecto-sp13_S_contig66442.17504.1 ID=mRNA_Ecto-sp13_S_contig66442.17504.1|Name=mRNA_Ecto-sp13_S_contig66442.17504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig66442:148..258- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGATCGGAGCCGGAAGCGTTCTGGGACGCCCTTGGAGGCATGGGCGA
GTACCCCAAGTCGTCAGAGGCTGAGGAAGTCTCACAGGAACCACGTCTGT
TCCAGGTGTGA
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